ipo9 (ipo9,LOC106566056)


Basic Information

Item Value
gene id ipo9
gene name ipo9,LOC106566056
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22974204 ~ 22993650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248415.3
GGGAGAATGGCAGCAGTAGATCAGAGCTCCTCCTCTGGGCTGCTTTGGCGCGCTGGGCTCCTCTCTGCTCCAGTGCAGCACACCAGTGCTCCCACAGCTTTGCGGAAACTGCTGGGGAAATGGCGGGTATGAGCGCTTCAGCACCGGGCGCCGGTTCAGCCTCGGGTCCGGTTCAGCAGGGACTGAAAGTGGCGCTAATAGAGACCCTGACAGCCATTCTGTCGCCGGTTCAAGAAGTGCGCGCCGCTGCGGAGGAGCAGATTAAAGTGCTGGAAGTGACGGAAGAGTTTGGTGTGCACCTTGCTGAACTCACTGTTGACCCCCAGGGAGCGCTCGCTATACGGCAGCTTGCCTCCGTCATTCTGAAGCAGTATGTTGAGACCCACTGGTGCGCACAGTCAGAGAAGTTCAGACCACCAGAAACCACTGAAAGGgccAAGGCAGCGATACGTGAGCTCCTGCCGGGCGGCTTGCGGGAAGCTATCAGTAAGGTGCGCTCCAGTGTTGCCTATGCTGTGTCAGCCATTGCTCACTGGGACTGGCCGGAGGCGTGGCCTCAGCTCTTCACTCTCCTTATGGACATGCTTGTCAGTGGGGATATCAATGCTGTGCATGGTGCCATGAGAGTCCTCACAGAGTTTACCCGAGAAGTGACGGACACACAGATGCCACTGGTGGCGCCTGTTATTTTACCAGAGATGTATAAAATCTTCACCATGGCAGAGATCTACAGCATTCGAACACGTTCCAGAGCCGTGGAGATCTTTACTACCTGTGCCAACCTTATCTGTGCTATTGAAGTATTTGAAAAGggtgcTGCCAAAGCTCTTATCTTTCCTGTAGTGCAGCAGTTCACTGAGGCGTTTGTGCAGGCCCTGCAGATGCCTGATGGACCCACTTCAGACAGTGGCATTAAGATGGAGGTCCTCAAGgctGTGACCGCCCTTGTGAAGAACTTTCCCAAATCCATGGTGTCCTCCATGCAGCAGATTCTTCCCATTGTGTGGAATACACTAACAGAAAGTGCTTCCTTTTATGTAAGAACAGAGGTAAACTACACAGAGGAAGTGGATGATCCTGTCGACTCTGATGGGGAGGTTCTAGGCTTTGAGAACCTGGTCTTCAGTATTTTTGAGTTCGTCCACACACTGCtggataataataaatttaagaGCACGGTTAAGAAAGCTCTCCCGGAGCTCATCTACTACATCATCCTCTACATGCAGATCACAGAGGATCAGATTAAAGTTTGGACTGCCAATCCTCAGCAGTTTGTggaggatgaagatgatgacACCTTCTCTTATTCTGTCCGAATATCTGCTCAGGATTTATTACTGGTTGTTGCAGCAGAGTTCCAGAACGAGAGCGCGGCAGCTTTAGCAGCAGCGGCAACGAGACACCTGCAGGAGGCAGAGCAGGCCAAGAACGCTGGAAACGAGCACTGGTGGAAAATCCACGAAGCCTGCATGCTTGCTCTGGGCTCCGTCAAGACCATCATCACCGAGAATGTAAAGAATGGCCGCATTCAGTTCGACATGCACGGCTTCCTCGCCAACGTCATTCTCGCTGACCTCAACCTGGCCTCGGCCTCTCCGTTCCTGCTGGGCCGGGCACTGTGGGCTGCGAGCCGCTTTACTGCAGCCATGTCTCCAGAACTCATCCAGCAGTTCCTGCAGGCGACGGTGAGCGGCCTTCACGACAGCCAGCCGCCGTCAGTGCGGATCTCCGCAGTGCGAGCAATCTGGGGGTACTGTGATCAGCTGAAGCTGTCGGAGAGCACCCACGTCCTGCAGCCCTACCTGCCCAGCGTCCTTGAGGGTCTGGTTCAGCTGGCTGCCCAGTTTAGTTCAGAGGTCCTCACGTTAGTCATGGAGActctgtgtattgtgtgtactgTGGACCCAGCATTTACCACCAGCGCCGAGAACAAGATCTGCCCGCTCACCATCGCCATCTTCCTCAAGTACAGCAATGATCCTGTTGTGGCATCCTTAGCCCAGGACATCTTTAAGGAGCTGGCACAGATCGAGGCATGCCAAGGCCCGATGCAGATGCGGCTCATCCCTATGCTGGTCAGCATCATGCAGGCGCCGCCGGATAAGATACCCTCGGGCCTGTGTGCTACAGCTATTGATATCCTGACGACGGTGGTCCGCAACACTAAACCCCCGCTGTCAGAGATGCTCGTGTGCCAGGCTTTTCCTGCTGTGGCGCAGTGCACCCTTCATACAGACGACAACACCACCATGCAGAACGGAGGTGAGTGCTTGCGGGCCTACGTCTCGGTGGCTCTAGAACAGGTGGGTCAGTGGCAGGACGAGCAGGGGCACAGCGGCCTCTGGTACGTCATGCAGGTGGTCAGTCAGCTCCTGGACCCCCGTACCTCAGAGTTCACCGCAGCCTTTGTGGGCCGTCTGGTTTCCACCCTGATCGCCCGTGCTGGCACACAGCTGGGAGAGCAGCTGGACCAAGTACTGCGTGCCATCCTCAGCAAGATGCAGCAGGCTGAGACCCTGAGCGTCATGCAGTCTCTGATCATGGTGTTCGCTCACCTGGTCCACTCCCAGCTGGACCCTCTGCTGGAATTTCTGTCCAGCCTTCCGGGACCCACAGGAAAACCCGCTCTGGAATTTGTGATGACTGAGTGGATGAGCCGCCAGCATCTCTTCTATGGGCAGTATGAAGGCAAAGTCAGTGCTATAGCTCTGTGTAAACTCCTTCAGCACGGTCTCAACGCCAACGACAAGCGCCTGCAGGACATTGTGGTGAAAGGGGAAGAAATTTTTAACGCAGAGGAAGGTATTCGCACACGATCCAAATCGGCCAAAAACCCAGAACGATGGACCAACATTCCTTTACTTGTGAAGATCTTTAAACTTATAGTGAACGAGCTCTCGTCTGTAGtggaggctaatgctaacagatCTAATCCTGCAGATTGGAGTCAAGATTCAGGAGGAATGTGGGAGGAACAAGAGgacgaggaggaggatgatgacGAAGATGAAGGATTAGAAGGGCAGCTGCTTTCTGACCTCATATCTTCTAACAAATATGatgatgattattatgaggatgatgatgaagatgaccCAGATGCCTTGAAGGATCCTATATATCAAATTGATCTTCAGgcTTATCTGACGGATTTCCTGACCCAGTTTGCCCAGCAGCCGTGCTACAGCATGTTTTCTGGACATCTAAATgaatcagagcgaagagtcttGCAAACCATCGGTATCTAACCTGCACCTCTCCCCGTTATCAGCTCAAACTGTGTCCTTGTTTCAGTGTTTATCACTCGCTCGTATCTTTCCAACCTGGGACTAGAGTGGCCTCGAGAAGCTGGCACTTACAAACAACCCCAAACAGCACAACCGAGGACAGATTTCCAAACATGATGCACTTGTTGACACAGCCTGCCTGACGGTCTGCTGAAGGAgtgcacttttaaaatgtaaaggaagTGGAACCTCCTGGATGTCGACCTCCAAAGATGACCTGGAGGGTGGAGCCAATGAAACGGTTAACAAGGCACAAATAAGGCCCAGTGAACTGGGAGGAGCTTCGGGCGAAAGGAAAGGGGGTTAAAAAGGGTCTGTGAGTTCTTCGCAAAAGGGCCGATATATCAGTATCGAAATGTTTACGAAGTTTCAGCTGTTGTCCATTTGTAAATTCTCACTTTGCCGTTTCATGGTGGTCTTAAACTCTTTCTGTAAAGGAAGGCATATTTAGACAAAAGACTGACTTTAACTTTGACGAGTTGCTGGTGAATGTTGGCGGCCTTATCGGACAGAACCAAGTCTGACGTGAAAAGCTCTCCTAAGCCTCGTCGTTATGGCCGTGCAGTGTGGTGGGTATAAGGGATTCACTGTGTGCCATGGTGATGTACGGCCGACTAGTGTCCTTGTACCCGCTAAAATTTGGGGtgatatttcaaaataaaaggccCATGaaagta

Function

symbol description
ipo9 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytosol and nuclear envelope. Is expressed in several structures, including blood; immature eye; nervous system; ventral mesenchyme; and ventral mesoderm. Orthologous to human IPO9 (importin 9).

NR:

description
PREDICTED: importin-9

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K20224 IPO9, RANBP9; importin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248415.3 True 3967 mRNA 0.52 24 22974204 22993650

Neighbor

gene id symbol gene type direction distance location
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding downstream 1799 22963708 ~ 22972405 (-)
lmod1 NA coding downstream 15158 22951724 ~ 22959046 (-)
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding downstream 29195 22940330 ~ 22945009 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding downstream 48536 22850141 ~ 22925668 (-)
LOC103042162 LOC108412995 coding downstream 133880 22805581 ~ 22840324 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding upstream 2444 22996094 ~ 23028601 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding upstream 39825 23033475 ~ 23036792 (-)
LOC103044418 adipor1 coding upstream 69517 23063167 ~ 23072202 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding upstream 80469 23074119 ~ 23082128 (-)
rnpep rnpep coding upstream 93876 23087526 ~ 23098564 (-)
G192232 NA non-coding downstream 11395 22961247 ~ 22962809 (-)
G192237 NA non-coding downstream 22878 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 35050 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 237962 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 286066 22684675 ~ 22688138 (-)
G192240 NA non-coding upstream 37002 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 105188 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 111458 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 160932 23154582 ~ 23155042 (-)
G192335 NA non-coding upstream 221940 23215590 ~ 23223369 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 170562 22786163 ~ 22803642 (-)
amhr2 NA other downstream 251299 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 611746 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1122562 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1429373 21510924 ~ 21544831 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 60983 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1045596 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2218025 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2881260 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3717603 26711253 ~ 26724106 (-)

Expression


Co-expression Network