rnpep (rnpep)


Basic Information

Item Value
gene id rnpep
gene name rnpep
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23087526 ~ 23098564 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248420.3
GATAATTAATTGaggattatttatatattattattagtgcccCAAAATCGcaattctgtctctgtgtttatggGCTCAAATTGCCCACCAAGAACTTCCTGGAACTATCTGAAATCTCCATGAATCACGTGACCATCAAGGATTTTGAACTTCCGTTGTcgcgactctctctctctatggctctGAATCCGGCGAGCCAGTGTTCGGTCAGCTCGCGCTGAAGCGGACAGTTCCAGAACCAGAACCCGGAGCGGAACCAGCATGGATGATAAAGCCGCGGTTCTGCACGCGGACACGGCGGAGGACGTGGCAACCTCCTCCAGTTTCCGACGGTTCCGAATAGAGCACTTCCACCTGGACCTGCAGGTGGACTTCGACCAGAGGAGCCTCTCCGGAACCGAGTCTCTGCGGGTCCGCTGCGCGCTGGGCTCCGCCGCCGAGCTGCTCCTGGACTCCCACCCCAGCCTGGAGCTGCACGAGGTCTCCTTCAGCCGGGACGAGCGGGACTGGACCGCTGCCCAGTTCCACAGCCGTGACTTCACCAGCTACGGGTCCACGCTGGTGGTCCAGTTCCCCACCGCCTGGAGCTCAGGAGACCAGTTCCACCTTTCCATCAAATACACAGCCCACCAGGGACCCGGGGTATGCTGGCTGGACCCGGAGCAGACGGCTGGGAAGCTCCGGCCGTACGTGTTCACTCAGGGCCAGGCCGTCCTCAACCGGTCATTCTTCCCCTGCTTCGACACTCCAGCCGTAAAGAGCACATACACCGCCGCCATCAAGGTGCCTGATGGCTTTACTGCAGTTATGAGTGCCACCAAGTGGGAGCACAGGAAAGCAGATAACACCTTCCTCTTCAGCATGGAGCAGCCCATACCTGCCTACCTGGTGGCACTGGCAGTCGGGGACCTGGTATCAGCTGAAGTGGGTCCAAGGTCACGGGTGTGGACAGAGCCGTGCTTATTGGAAGCTGCCAAGAAAGAGTACGATGGTGTGATCGAGGAGTTTCTTCTGGTAGGAGAGAGGCTGTTTGGGCCATACGTTTGGGGAAGGTATGATGTGCTGTTCATGCCACCGTCATTCCCATTCGGCGGGATGGAGAACCCCTGCCTGACCTTCGTCACTCCGTGCCTGCTGGCGGGTGACCGATCACTCGCTGACGTCATCATCCATGAGATCTGCCACAGCTGGTTCGGAAACCTCGTCACCAACGCCAATTGGGGGGATTTCTGGCTTAACGAGGGCTTCACCATGTACGCCCAGCGCAGAATCTGTAAAGAACTGTACGGCGAGGCGTATACCTGTCTGGAAGCAGCTACAGGCCGAGCGTTACTCAGACAGCACATGGACAACACCGGAGAAGACCATCCTCTCAACAAACTGCGGGTCAAGATCAAACCGGGTGTTGATCCTGACGACACATATAACGAGACACCGTACGAGAAAGGCTTCTGCTTCGTATCATATCTGGCCCACCTGAGAGGAGACCAGAAACGCTTCGATGCTTTTCTCAAGGCGTATGTGGACAGGTTTAAGTTCCGCAGTGTGATCGCTGAGGATGCTCTGGAGTTCTTCCTGGAGTTTTTCCCTGACCTGAAGAAGAACAGCGTCCACAAGATTGAAGGTTTGGAGTTTGATAGCTGGCTGAACGTTTCTGGATGGCCTCTGTACCTCCCGGACCTCTCTGCCGGACAGAGCCTGATGAAGCCTGCTGACCAGCTGGCTGACCTCTGGGGGGCGGACAGCGTCGACATCGCCGCCATCAGCAAGATCAATACAGAAGCCTGGAAGACCTACCAAACTGTTTACTTCCTGGACAAGATAATTGAGAAGTCTCCACTTCCTGATGGTAATACCAGAATGCTAGAAGAACAGTACCCACACATGGTGAAGTCCAATAACGCTGAGTTAAGACTACGCTGGGCCCAGATTGTTGCGAAGAACCAACACAAACCTGGATACCCACACGTTCGCAGTTTCCTCAGCTGTCAGGGGAAACAGAAGTACACGTTACCAGTGTATCGGGCTCTGTGGAGCGGAACAGAGGAGATGAAGGCTTTGGCTACAGAGATCTTCTCTGCTACTTCCCATCAGCTCCACATAAACGTCCGAAATTACGTGAAGAAGATAATGGTCTGACCCTTTGATATAGCAAGCAGATCCtgttaatcattattttaaataaatttaaagaaTTTTGTGAGACACCTGTAAAAtatttgattgatttgattttaatttaattagatctGTTCATACTAATTATAAGGTGCTAATAATGGATTATAAGGGATGAGGCAGTTTGTTTTCCTAATTTATCTTAAAGTAGatttttctaaattaaaatGTCTGACTTGTGCTGCAAAagttggggaaaaaaacaataaaggtaTTTCTCTAATGAC
>XM_015605622.2
ATTAATTGaggattatttatatattattattagtgcccCAAAATCGcaattctgtctctgtgtttatggGCTCAAATTGCCCACCAAGAACTTCCTGGAACTATCTGAAATCTCCATGAATCACGTGACCATCAAGGATTTTGAACTTCCGTTGTcgcgactctctctctctatggctctGAATCCGGCGAGCCAGTGTTCGGTCAGCTCGCGCTGAAGCGGACAGTTCCAGAACCAGAACCCGGAGCGGAACCAGCATGGATGATAAAGCCGCGGTTCTGCACGCGGACACGGCGGAGGACGTGGCAACCTCCTCCAGTTTCCGACGGTTCCGAATAGAGCACTTCCACCTGGACCTGCAGGTGGACTTCGACCAGAGGAGCCTCTCCGGAACCGAGTCTCTGCGGGTCCGCTGCGCGCTGGGCTCCGCCGCCGAGCTGCTCCTGGACTCCCACCCCAGCCTGGAGCTGCACGAGGTCTCCTTCAGCCGGGACGAGCGGGACTGGACCGCTGCCCAGTTCCACAGCCGTGACTTCACCAGCTACGGGTCCACGCTGGTGGTCCAGTTCCCCACCGCCTGGAGCTCAGGAGACCAGTTCCACCTTTCCATCAAATACACAGCCCACCAGGGACCCGGGATCTCATGGCTGGTTCCAGAGCAGACCGCTGAGCGGAACCGGCCATTCCTGTACACGTCTGGGTTCCCCGTGCTGAACCGGAGCCTGTTCCCCGGCTTCCACACGCCCATGACTAAGAGCAGATACTCGGCTACAGTGCAGGTGCCTGATGGCTTTACTGCAGTTATGAGTGCCACCAAGTGGGAGCACAGGAAAGCAGATAACACCTTCCTCTTCAGCATGGAGCAGCCCATACCTGCCTACCTGGTGGCACTGGCAGTCGGGGACCTGGTATCAGCTGAAGTGGGTCCAAGGTCACGGGTGTGGACAGAGCCGTGCTTATTGGAAGCTGCCAAGAAAGAGTACGATGGTGTGATCGAGGAGTTTCTTCTGGTAGGAGAGAGGCTGTTTGGGCCATACGTTTGGGGAAGGTATGATGTGCTGTTCATGCCACCGTCATTCCCATTCGGCGGGATGGAGAACCCCTGCCTGACCTTCGTCACTCCGTGCCTGCTGGCGGGTGACCGATCACTCGCTGACGTCATCATCCATGAGATCTGCCACAGCTGGTTCGGAAACCTCGTCACCAACGCCAATTGGGGGGATTTCTGGCTTAACGAGGGCTTCACCATGTACGCCCAGCGCAGAATCTGTAAAGAACTGTACGGCGAGGCGTATACCTGTCTGGAAGCAGCTACAGGCCGAGCGTTACTCAGACAGCACATGGACAACACCGGAGAAGACCATCCTCTCAACAAACTGCGGGTCAAGATCAAACCGGGTGTTGATCCTGACGACACATATAACGAGACACCGTACGAGAAAGGCTTCTGCTTCGTATCATATCTGGCCCACCTGAGAGGAGACCAGAAACGCTTCGATGCTTTTCTCAAGGCGTATGTGGACAGGTTTAAGTTCCGCAGTGTGATCGCTGAGGATGCTCTGGAGTTCTTCCTGGAGTTTTTCCCTGACCTGAAGAAGAACAGCGTCCACAAGATTGAAGGTTTGGAGTTTGATAGCTGGCTGAACGTTTCTGGATGGCCTCTGTACCTCCCGGACCTCTCTGCCGGACAGAGCCTGATGAAGCCTGCTGACCAGCTGGCTGACCTCTGGGGGGCGGACAGCGTCGACATCGCCGCCATCAGCAAGATCAATACAGAAGCCTGGAAGACCTACCAAACTGTTTACTTCCTGGACAAGATAATTGAGAAGTCTCCACTTCCTGATGGTAATACCAGAATGCTAGAAGAACAGTACCCACACATGGTGAAGTCCAATAACGCTGAGTTAAGACTACGCTGGGCCCAGATTGTTGCGAAGAACCAACACAAACCTGGATACCCACACGTTCGCAGTTTCCTCAGCTGTCAGGGGAAACAGAAGTACACGTTACCAGTGTATCGGGCTCTGTGGAGCGGAACAGAGGAGATGAAGGCTTTGGCTACAGAGATCTTCTCTGCTACTTCCCATCAGCTCCACATAAACGTCCGAAATTACGTGAAGAAGATAATGGTCTGACCCTTTGATATAGCAAGCAGATCCtgttaatcattattttaaataaatttaaagaaTTTTGTGAGACACCTGTAAAAtatttgattgatttgattttaatttaattagatctGTTCATACTAATTATAAGGTGCTAATAATGGATTATAAGGGATGAGGCAGTTTGTTTTCCTAATTTATCTTAAAGTAGatttttctaaattaaaatGTCTGACTTGTGCTGCAAAagttggggaaaaaaacaataaaggtaTTTCTCTAATGAC

Function

symbol description
rnpep Predicted to enable metalloaminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including anterior axial hypoblast; hindbrain neural plate; lens; pronephric duct; and solid lens vesicle. Orthologous to human RNPEP (arginyl aminopeptidase).

NR:

description
PREDICTED: aminopeptidase B isoform X1

GO:

id name namespace
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01260 RNPEP; aminopeptidase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248420.3 True 2405 mRNA 0.52 11 23087526 23098564
XM_015605622.2 False 2401 mRNA 0.52 11 23087526 23098560

Neighbor

gene id symbol gene type direction distance location
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 5398 23074119 ~ 23082128 (-)
LOC103044418 adipor1 coding downstream 15324 23063167 ~ 23072202 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding downstream 50734 23033475 ~ 23036792 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding downstream 58925 22996094 ~ 23028601 (-)
ipo9 ipo9,LOC106566056 coding downstream 93876 22974204 ~ 22993650 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding upstream 5690 23104254 ~ 23144408 (-)
LOC103045076 gpr25 coding upstream 61104 23159668 ~ 23162419 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding upstream 110321 23208885 ~ 23282019 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 510689 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 526346 23624910 ~ 23635826 (-)
G192240 NA non-coding downstream 56456 23030652 ~ 23031070 (-)
G192232 NA non-coding downstream 124717 22961247 ~ 22962809 (-)
G192237 NA non-coding downstream 136200 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 148372 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 351284 22735091 ~ 22736242 (-)
LOC111195460 NA non-coding upstream 274 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 6544 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 56018 23154582 ~ 23155042 (-)
G192335 NA non-coding upstream 117026 23215590 ~ 23223369 (-)
G192336 NA non-coding upstream 117612 23216176 ~ 23224603 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 28721 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 283884 22786163 ~ 22803642 (-)
amhr2 NA other downstream 364621 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 725068 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1235884 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 940682 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2113111 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2776346 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3612689 26711253 ~ 26724106 (-)
G193097 NA other upstream 3933099 27031663 ~ 27033089 (-)

Expression


Co-expression Network