LOC103045443 (LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489)


Basic Information

Item Value
gene id LOC103045443
gene name LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23074119 ~ 23082128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248421.3
TGCAGTGTACAGTGTACACACCCGAGCTGCAGCAGCAAGTAACTTACAGTACACTAGCTAATCTAtattagctaaattagctagtATTAGCTAGTTAAATAGTTAGTTTCGTATATTTCCGGTTGTTTAGAAAGATTTAGCCGTCATGTCCTACGCAATGACCACCACTGTAGCAGTGACAGCCGGGGTGCTGGTGGTCTCCACTGTGGCAGTGTTGGGGTATTTTTTTCTAGGCAGGAAGAAGAAGGCTCCGATTACTTTGGTCGACCCGTCAGAAAAATACAAGCTGAGACTCATCGATAAAGAGGTTATTAGCCACGATACACGCaaatttcgctttgccctgccGAGCCCTGAGCACATCCTGGGCCTGCCTGTAGGAAAACATGTCTACCTCTCTGCTCGGATCGATGGAAACCTCGTTGTCCGTCCGTACACTCCAGTTTCCAGCGACGACGACAAGGGATGTGTTGATCTGGTGGTGAAGatttacttcaaGAACGTGAACCCAAAGTTTCCTGAGGGAGGAAAGATGTCTCAGTACCTGGAGAGCCTGAAGCTGGGAgatgttgtggacttcaggggTCCAGGAGGCCTGCTGGAGTATAAGGGCAATGGGCAGGTTGCTGTACAGGCTGATAAGAAGTCTGAACCCGAGATGAAGAAGGCCGCTACGCTGGGTCTGATCGCTGGCGGGACAGgCATCACCCCAATGCTGCAGCTGATCCGAGACATCATGAAGAACCCAAGTGATAAAACCACCTGCAGCCTGCTGTTCGCCAACCAGACTGAAAAGGACATTCTGCTGCGGGACGAGCTGGAGGAGATCCAGGCCAGACACCCAGAGAAGTTTAAGCTGTGGTTTACTGTGGACCGAGCCCCGGAAGACTGGGAGTATAGTGAAGGCTTCATCAGCGCCAGCATGATCCAGGAGCACCTCCCTCCACCCAGTGACGAGTGCATTATCCTGATGTGCGGCCCGCCTCCCATGATCCAGTTCGCCTGTAACCCCAACTTGGACAAGCTGGGCTACGGGCAGAGCCAGCGCTTTACCTACTAGTCCTATCGACCAATGCTCCTGAGTTTGGATTGGACTGATTAAATGAAACCGCCCCAAAGCTGACAGCACCTCATCAAAACCACCAAAGCCTCTGCAGACGCACAAGTCTCTCCTCAGGATAAGCAGATCAGTCTTAGAAACCACCACAGACATGgtcctaatcctaatcctaaatCCTAAATCAGACTACTCTTAGATGCTGTGTGAGTACCAGCTCTGGTACTTCAGCCTAAACCAATCACTGCTGATCTGCTAAACTTGTCCAAGTGCCGCCCTGGCGAGAGACCGAACCGTGCCGTTAAAAATGACTGTGTACATAACTGTGTAcatatagaccactgaagttgtGTTGTCATTTTGTAGTAAACACTCCAGGTCCGATGTTCATTTTCAGTGGCAGAAATGAATGGAGTTCGGGGTTAGAGACAAATGTGGGCATACTGAGGATTTCAAAATGAAGCACAACTTCATTGGTCTGttggttttgcttttttgctCAGGTGTTATTTTGCTAAATGAGTATTTACCATTAGTAACTGTGTGCTGAAGCACTAATACACTTAAAACCTTTGATGTGCACTTGTTGACATTGCTGTTTGACAGCCAATGAAGCTGGATCTCACATGTATGGCTGTATCACTGTGTTATAATGTAACAGTGTAAtgaaatatatagtatatgtatTTTGTTCTGAAGTGCATGCAGCTCTCACTCTATATATTTTGAAGTGTTCAATGTAATGTGCTTTTGTTTGGCAAAATATAATCTATTTTATGAACATAAAGAGCTTGTTACAGTgca

Function

NR:

description
PREDICTED: NADH-cytochrome b5 reductase 3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00326 E1.6.2.2; cytochrome-b5 reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248421.3 True 1861 mRNA 0.47 9 23074119 23082128

Neighbor

gene id symbol gene type direction distance location
LOC103044418 adipor1 coding downstream 1917 23063167 ~ 23072202 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding downstream 37327 23033475 ~ 23036792 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding downstream 45518 22996094 ~ 23028601 (-)
ipo9 ipo9,LOC106566056 coding downstream 80469 22974204 ~ 22993650 (-)
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding downstream 101714 22963708 ~ 22972405 (-)
rnpep rnpep coding upstream 5398 23087526 ~ 23098564 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding upstream 22126 23104254 ~ 23144408 (-)
LOC103045076 gpr25 coding upstream 77540 23159668 ~ 23162419 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding upstream 126757 23208885 ~ 23282019 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 527125 23609253 ~ 23622118 (-)
G192240 NA non-coding downstream 43049 23030652 ~ 23031070 (-)
G192232 NA non-coding downstream 111310 22961247 ~ 22962809 (-)
G192237 NA non-coding downstream 122793 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 134965 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 337877 22735091 ~ 22736242 (-)
LOC111195460 NA non-coding upstream 16710 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 22980 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 72454 23154582 ~ 23155042 (-)
G192335 NA non-coding upstream 133462 23215590 ~ 23223369 (-)
G192336 NA non-coding upstream 134048 23216176 ~ 23224603 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 15314 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 270477 22786163 ~ 22803642 (-)
amhr2 NA other downstream 351214 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 711661 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1222477 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 957118 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2129547 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2792782 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3629125 26711253 ~ 26724106 (-)
G193097 NA other upstream 3949535 27031663 ~ 27033089 (-)

Expression


Co-expression Network