LOC103036072 (phactr3,LOC108254891)


Basic Information

Item Value
gene id LOC103036072
gene name phactr3,LOC108254891
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7229473 ~ 7343221 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251380.3
CCCTCCATCCGTGTTTGGCTCTCAGATGCGAGACCCTCGCAGCTGTCAGGCTGAATCGTGTCCAGGTTGCTGGACTGCGCGCCGCTGCGTGTTCAATCTTACATTAATCCAGCGCGCTCGTGCCTCTGCATGGCTACAGCGACCGGGACGACTGGGCTGGAGGAGTGTGTGCAGCGGGGGAGATCTCAGAGTGATCCGAGCGTCCTCGCCGAGGCTCGGATAGTCTACAACAACAACAGCGCAGATGttatggagcagcagagagccCTTCACTCCGGTTGCCTGGTGACAGGGGTCCGTACGCCCCCCATACGACGCAACAGCAAGCTGGCTAGCCTGGGCCGCATCTTCAAGCCCTGGAAgtggaggaaaaagaaaaatgagaagtTAAGGCAAGGCTCCACAGGAATGGAGAGGAAAGTGGCGGCTCGACAGCCTCGTGATGAGCTGGTGAGGAAAGGTCTGGCAGAGGCGGGTACAGgGTCAGGTCTGGCATGTGGGGGGAACTCTGAGGAGCCAGGGACTCCCACCCAGGAATACTCAGATACcgaggagagagaggatgagatcATGCCTCCACTGGCCAACGCCTCTGAGGAGATGGAACCTGATGATGAGGACAATCCTTCCACAGTGAAAGACGTCCCAGACGAACCCGAACCCGCAGGGGAGCCGAGCCGAAGTGAAGAAGAACAGGATCAAGAGGTTTCTTTCTCTGAGGCCTCCAGCAAGGACAGCAGCACTCCTCCCACTGAAGCTGTCGAAAGTCCAGAGGAACCAAAGGCAGAGCCGCCGCGCAGAGAAGCCCGCACCCCACCCCCAAAGCTGCCAGCCAAACTCCTGCCCAGACTGGGCAGCCTGGACAGTTCTCACCCCAATCATATGCGCCCTGCTCCAGCCACTCTTCCCCGGAACTTCACCCTTCCCAAAGACGCACTGAGGGGCCGTATATCCACCCCCACAGGTTCCCCACACCTGGGCAATATGCACCCGGCACTGCCCCCCAGCTGCATCATAGAGGAGCTGCACCGAGCACTGGCTACCAAACACCGTCAAGACAGTTTCCATGGTAAAGAAGTCCGCAGCTCCCCGAAAAGGCGCTCTGATGGACGTCTTTCACGCACCTCCAGCACAGAGGGAGAGCAGCAGGGTGGAgaagtggaggagaacaaggaGAACATGCGGCTGGACGAGTATTACAGTGACCAGGACAGCTGGAACGAATCTGTGATTTCCGgGACACTGCCACGGCGGATAAGGAAGGAGCTTCTGGCTGTGAAGCTGCGCAACAGACGTAAGCAGGAGCTGGAGGACAGGAACATCTTTCCAGTCCGCAGCGACCAGGAGCGGCAGGAGATCCGCCAGCAGATAGAGATGAAATTGGCCAAGAGACTCAGCCagagacccgcggtggaggagCTGGAGAGCAGGAACATCCTCAAACAAAGGAATGACCAGACGGAGCAGGAGGAGAGACGAGAAATTAAACAGAGGCTGAACAGAAAGCTGAACCAGCGGCCCACGGTAGACGAGCTACGAGAACGAAAGATCCTCATCCGCTTCAGCGACTACGTGGAAGTGGCCAAAGCTCAGGACTATGACAGGAGAGCAGACAAGCCCTGGACTAGACTGTCTGCTGCAGACAAGGCAGCAATACGCAAAGAGCTGAACGAGTTCAAGAGCAACGAGATGGAGGTCCACGCGTCAAGCAAACACCTCACCAGGTTCCACCGGCCATAGCAGCGAGGTTTCTTCTGTGAAGAATATGCTGGACATCAAAGGAAGTCCTCAGGAGGAACTTTCCTGTGCCCTGGCCCATGAGGCGGTCCCTGGAGGGCCCTGCAGGTTTTTTTTGGGCATTAGTCGAACCTTGGAGGCTATGTCTCTGGAGCTTCAGCCTGGAGAAGCTAAAGCTCGTTCGTGCAAGCTCTGTGAAACTCTCTACTCAGCCAAGCTTCGTCTCTGTAGATTTCGGTAcctgtttatttttcattttcttctctCCAGAAGAAgcttgatgatgattatgaagaaaaaaatcaagaagaaAAGAAACCCAGGCTCTTTTTTAACAGACTCTTTTTTTAAGTTCGCCTTTCAAATGCCAATAGGGAGGGACTTTGGGGCAGGGGGAGGTCTTGCATGTGACTCAAAACTCAGAACCTTTTACCCTCACCAGTGCCGGTACTGTAGTCACACCCCGAGAGTTTGTGGGCtcccactttaaaaaaaaaaaaaaaaaaaaagaaaaggagaaaaaaagaaaaggaaaaacaaacaaaaacttgaGTTTCATATCAACTGTATAAATGTCAGTCTGAGGgaatggggggaaaaaaggaaTTCATGTCTTACCTTTGTAAGCACTATTTATTGTCTGCACAGTACAAGTTTTGGATTTTTGAGAAA

Function

symbol description
phactr3 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Located in nucleoplasm.

NR:

description
PREDICTED: phosphatase and actin regulator 3 isoform X1

GO: NA

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251380.3 True 2409 mRNA 0.53 14 7229473 7343221

Neighbor

gene id symbol gene type direction distance location
LOC103037403 NA coding downstream 24082 7197200 ~ 7205391 (-)
hp1bp3 hp1bp3 coding downstream 163387 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 179172 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 198446 7007447 ~ 7031027 (-)
sox13 sox13 coding downstream 280519 6897991 ~ 6948954 (-)
LOC103035242 NA coding upstream 33338 7376559 ~ 7378591 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 90923 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 778516 8121737 ~ 8139529 (-)
LOC103046978 LOC108414459 coding upstream 944697 8287918 ~ 8326276 (-)
LOC111195367 LOC106511942 coding upstream 2393127 9736348 ~ 9738497 (-)
G187881 NA non-coding downstream 41021 7188078 ~ 7188452 (-)
G187880 NA non-coding downstream 41435 7187790 ~ 7188038 (-)
G187878 NA non-coding downstream 45420 7183826 ~ 7184053 (-)
G187875 NA non-coding downstream 74124 7153083 ~ 7155349 (-)
LOC111195364 NA non-coding downstream 98694 7106200 ~ 7130779 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding upstream 6790 7350011 ~ 7353303 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding upstream 11026 7354247 ~ 7361214 (-)
G187965 NA non-coding upstream 114557 7457778 ~ 7460141 (-)
G187968 NA non-coding upstream 122501 7465722 ~ 7465984 (-)
G187969 NA non-coding upstream 123872 7467093 ~ 7467324 (-)
pdrg1 pdrg1 other downstream 36221 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 246633 6977651 ~ 6982840 (-)
svbp svbp other downstream 1706552 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1723726 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2240215 4974228 ~ 4989258 (-)
G187946 mybl2,mybl2b other upstream 45176 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 65901 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2607863 9951084 ~ 9956317 (-)
G188898 NA other upstream 3647596 10990817 ~ 10991394 (-)
G189055 NA other upstream 4700692 12043913 ~ 12044293 (-)

Expression


Co-expression Network