LOC103042703 (LOC103042703,LOC108437606)


Basic Information

Item Value
gene id LOC103042703
gene name LOC103042703,LOC108437606
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6339628 ~ 6378764 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251403.3
CTCAGATGATATCCCCGGTCTCCTGTCAGCATGCAGGCTCACTGCTCTCCCCGCTTTGAGTGACCGAAGTCCGGCCTGAGTCACGATGAAGCGCCGGGTGCTGGACCGCAACTGCAACATCATCCAGAAGGTGGTGGACGAGCGCATGTGGGCGCTGTTCAGGAGCCACTGGCAGCACACGCTCACCTACTGGAGCGGCTTCTTCAGCTTCGGCCTGTGCCTGGCCCTGCTGGGGCCCACCGTGCTGGACCTGCGCTGCCAGACCCAGGCCAGCCTGCAGGGCATCATCGTGGTCTTCTTCGCCCAGCAGTTCTGCCTGTTTGTGGGAAGCTCGGTTGGTGGATTCTTCAGCAAGTCGCTCACCTGCTCGTTATCATCCCTCGCTTCATGCACCTTCATCATCTCCGTGGTGTTCGCCTTCATCCCGATATGCCGCAATTTACCCATGCTGGCTGTGGCTATGGCTATTACCGGTCTGGCCATGGGGGTCATCGATACCATCTCCAACCTGCAGCTGGTGAAGCTCTACCAGAAGGACTCCACAGTCTTCCTGCAGGCTCTCCACTTCTTCGTGGGACTTGGGGCATTGTTGAGCCCCCTCATCGCTGACCCCTTCCTGTCTGAGACTGACTGCGTTTTAGGAAACACCACCATCAACTCCTCAACAACGATGAGGCATCTGAGGAACAAGCTAGCCGGCAGACACGTGTACAacgtctcccacatccagctccaTACTGAGGGGGAGGTGGTCACCAACGTCTCCTACGCCTTCTGGATCATGGCACTCATCAATCTTCCTGTACCCATCGCTGTGATGGTTCTGATGTATCGGGAGCGGATTCTGACCTGCTGCTCTGAGCGCAGTCCACGTCTCCTGGATGGGGACACGCAGATGTGCACAGTGAAGACACAGCACGGTTTAGAACAGACGGACGTGAGCTCACAGGGATACCCTGACCCTACAGATAACACAAACATGATGAACTGCTGTCACCTCAGCAAACTGAAGGAACTGCCCCTCTCCTTCTTTGGGATCCATATCTTCGGAGGGTTGGTGCTGTTCTTTTCAGATGGCATTGTGGGGTCATACACTGGCTTCGTTTATACCTACGCTGTGGCTTCACCCATGAGTCTGCCTCACAAGATGGCTGGATACCTGACCAGCGTCTTCTGGGCGTCCATCACTGTGGGGCGTCTGGCCTCCATACCCCTGTCTTATCGCATTAAACCTGTTCGCCTGCTCATTTTTAATCAGGTTGGTGTGATCGTCACCCTGTTCCTTCTGCTCATTTTCTTCCAAAGCAGCGTCTTCCTGTTTATTGGCACCTGCTTTCTGGGTCTGTTTATCAGCAGTATCTACCCCTGCATGCTGGCCTTCACTGAAGACATGCTGGACTACAGAGgttGTGCCACTACAGTGCTGGTGACGTTTGCTGGGATGGGTGAGATGCTGCTGCAGCTTCTGGCAGGAACAGTAATCAACTCGTACGGCAGCTACAGCTTCTTGGTTTGTGGATCGACGTTTGGCTGCATAGGCTTCACAATCTTTCTGGTGCTGCTGTTAGTCAACCATACgcacaaaaaatacaccacaGCCGTCACCAACACAGCCGCTGTAGCGGAGAATCCCAGAGCTAACGGGGCTCTGCACTGACGGCCGGCCGGGGATGAAGCTGGGTGAAGCTGGACCAGAGGAGGGGAAGTCGTTGAGTCCTGACAGACTGCGACTCTGCagagtgaggaggaggaggaagaggaggaggaacatAGACAGGACTGACTGTGGGGACTGTGACTGGAGGAGACTGAGCTTAAGACCCTGTTTGTCAAAATCAACAAAGATCAAACGTTGGGAacttatataaacataaacaacaaaaacagataaaatgaaTAATCGTAAACTGATTGTGCTTGAGTTTGCACAGGCTTTAACTCATCCTGGTTCTGTTACTGCTGTAACATCAGGGAGGTCAAACACAAAGCCAGCAGCTAGTTGGTGCATGAATGCtgtcatttatttgtttcttcaCTGATTTAAACCACAAGACACTTGTgtgcagagttgccaggtttgcgttttttcccgccaaattgggcttgtttaaaAATCCAGTTGCGGGTGGAAATTcaggatttttaatttttttacaaaacttatGTGTTGTCTAGGATGTTACGTCAACACGGCGGGTAAACGGGTAGAAGTCCAGACTAAAATCTATTTTCCTCGGCTTGATTACAACAATAAGAACCCGGAGAACATAGCAACATAATTTAGGACAGCATGAaaaggggggagagagagaaagaacgatgaagagagagagatacagagagatacagagagatggagagagaaagatataca

Function

NR:

description
major facilitator superfamily domain-containing protein 4A-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251403.3 True 2374 mRNA 0.51 10 6339628 6378764

Neighbor

gene id symbol gene type direction distance location
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding downstream 262914 5917506 ~ 6076714 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 563483 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 576116 5746890 ~ 5763512 (-)
LOC103022065 NA coding downstream 872753 4994997 ~ 5466875 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 1366782 4946572 ~ 4972846 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 16626 6395390 ~ 6502396 (-)
LOC103022878 NA coding upstream 433644 6812408 ~ 6828711 (-)
sox13 sox13 coding upstream 519227 6897991 ~ 6948954 (-)
kif17 kif17,LOC108438632 coding upstream 628683 7007447 ~ 7031027 (-)
sh2d5 sh2d5 coding upstream 654340 7033104 ~ 7050301 (-)
G187676 NA non-coding downstream 5191 6317990 ~ 6334437 (-)
G187680 NA non-coding downstream 35560 6302766 ~ 6304068 (-)
G187678 NA non-coding downstream 37050 6300832 ~ 6302578 (-)
G187669 NA non-coding downstream 65497 6273931 ~ 6274131 (-)
G187666 nucks1,nucks1a,LOC108255091,LOC107654381 non-coding downstream 85164 6242092 ~ 6254464 (-)
G187685 NA non-coding upstream 8162 6386926 ~ 6450250 (-)
G187700 NA non-coding upstream 141605 6520369 ~ 6520649 (-)
G187745 NA non-coding upstream 176551 6555315 ~ 6555877 (-)
G187763 NA non-coding upstream 379378 6758142 ~ 6758602 (-)
G187764 NA non-coding upstream 380743 6759507 ~ 6759902 (-)
svbp svbp other downstream 816707 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 833881 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 1350370 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 2178674 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 2559908 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 598887 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 809852 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 1009633 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 1030358 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 3572320 9951084 ~ 9956317 (-)

Expression


Co-expression Network