LOC103043323 (LOC108437607)


Basic Information

Item Value
gene id LOC103043323
gene name LOC108437607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6291800 ~ 6298905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251405.3
GCGCGTCATGTGACGGGGCCTCCGAGAAAACGCCAACATGGAGCCGAGACGAGCAGCGCGCTGTCCCGGACAATAACACGGAGAAAGAGCCGCGGGGAGCCGCGCTGACCGCGCATCCGCCCGCGGGGAGCTGGGCCGGGCTCGGGCCGCAGTGGAATCAGCTTGTGGCCTTTTGGTGATCCATTTTTCCCACACTTCCTCAACCgaccattaaaaaatattttttaaactggaAAGCAACAAATGGTCTCTATAAGTGATAAAGCAGTGACCACTGCTAATGATTCACTTGGGGACCAGGTGATGGCCTCCTTGCCTTTCATGGACGTTGGGGGCAGTGAAGGGAGCAGTTCGGCCTCCTGCTCCAGCCCGGAAATGGGAGACGCTGGCACTTACCTTGGCTGCAGCACgggggaggaagaggaggaggaagatttTAACTCCGCGATTGGCGGGGAGGAGGATCTGGGAGCGGCACAGCTTCCCAGGCTGCCGGATTTCATCTCTCACGTTTCTAGCACCTTCTCTCCGACTCTTGAGGACATCGAGGAGTTCCTGATGGAGAAGATGGAGCTGGTCCAAGAGGGTCAGATGACCCCCGAGGAGCAGTCCGTGGAGGTTGTTTCTAAAGAGCAGCCATCATTTAAAAGTGATCAGagcaataatattaatactgaagCAGCTAAGTCTTCCACAGTGCCTCCTGCAGGCCAGAATGataacgctgctgctgctgctagctCCGCTCCGGTGCTGGTTGGTGCTCCGCTGGTGCTGCAGATCCAGCCTGTGCAGCTCAGCGATCCCCTTCCCCAACCCAACCCCCAAGTTGGGTCAGCCAACGGGCTGCGGGTAGCACACCTGGTGCTGGGCGTGCAGGGCGGGCAGAACATCACGCTGCTTTCACCACAGGTGTCCTCTGCAACCCTCCTGCCCATCGTGGGTGAAGCAGGAGGCCAAGATCCAAAGTACGTGAAGATCGCCCCTTTGCCAATCACAGTGCGGGCAGTCGGCATAACGGGCACCAGCTTGGTCAAAGCCATCCCTCCACGCCCACCCAGACCCTCCACAGAGACTCTGCGGGTGCACAAATGCTCTCATCCAGGGTGCGAGAAGATGTACACCAAAAGCAGCCACCTGAAGGCCCACTTCCGCAGACACACGGGCGAGAAGCCATATTTGTGCAGCTGGCCGGACTGCGGCTGGAGgttctCGCGGTCTGATGAATTGTCCCGCCACCGTCGCTCTCACTCCGGAGTCAAGCCTTACGAGTGCACCATGTGCGACAAGAAATTCGCCAGGAGCGACCACTTATCCAAACACACCAAGGTGCACAGGAGCCCGCGCACCAGCAGACTAATCAGAACCAACTTCTGAAGCGCCAGGACCTCCTGACCCCACCCCTACCCACACTTACACACCAACTCACCCACCCACAGCAGACCTGGAGCTCGGaggctaacaggctaacaggctaacaagcAGAGAGTTAGAAGATCTAAACTGACTGCAGTCTTCCCTTACCTTTTTTTCCcgcctccttttttttttcattttatagttTATCCAGATGTTTGCTTTTCTTGGTGCTACACTAAGCTAAGTCGAATCTCAGGGATGTGATTGTTCAGCTCAAAGCAGATTTCTGGTGATCCGCTAGGCTCAGGCCCAGGCCCAGCTGAAGCTTAGCTAATTGCTCCGTTCTCCGTTCAGCGGGGGTGAAAGTTGCGGGAGGTTTTGTTATGGAAGCTAATGTAGGTCAGCTGAGGTTTgagatttgtttttgtattgaCTTTTCACTTAATTTCACAAAAAAGAAGAGATTAGGAGGGTTTTGAAGGCAATCCAATGCAAAATTAAAGATTTGGAGAGGTTAAGTGCTACATTTGGGTGCTAAATGTCTGTATTTTGCGAGTATTCCCTTAAGTAAGTCTGTTCAGACGGGAATAGTATGTATAgtaagtagtattagtagtttattatcaagtcaagtctcaagttaATGGTTTGGGCAGGAGGTAGCACAGACATGAGCTGAATTAAGGTTAAGCGATTATAGGGCGATTATAGTCTCAAGACTGccgtaaataataataaataaagaccaatgtagaaaataataataataataataataataataataataataataataataataataattattaatagacTATCATGTTGTTTCATGGTGAAGCCAAGATGAAGATCCCCCGCCTTTTTAGATTGTGGCAATATGCACTCATATAACGTGAGCttttaatgcaaaataatgcaattaaaatgcaaaaatatctCGACTGTCGTGGAATAGTATCAGTTTTATAGCACTTAGTGTACTCTGCGGAGTACCGCCCTCTGAACAGTTCAATCAAGACAAAGTCCAGTGTGATTGTCGTTACACCTATGTATTACTCTACATATTATttacatattcatattcatatttctctcattttctttttttgttttgtactgAAGTAGGAAGTACCTACGAAAATGCTACTAATCTGTAAAGGACGTTTTCTTGGCCCAATCACATCCCTGATTGAACCAGAAGATATTCTCACGTTGAGTATCTTCCAACTTTTCTCCTGTGCCTcgttaaatatgtatatacaatataagtatatacacatctctctctcactcggtCGAGAGAGGCTATGCCAAACCAGAGCTcccttacatacatacatacgttTGTGTTATCTCTGGGACTTTGGGTGAGTGACTTCACTATGTTTATGGACAAAGTTgctcatcatcattatcatcatcgtCGTCatcatcatataaatatatatatacgtatatacacGTACTGTAATACAGACCTATAAGCTAGGAGCAGTTTTGTTCTTTCTCCATGTAAAGTATCGTTTCCTTTGAAAAGAAAAGCTGCTTCCTTACATTATCATAGTGTGCTTTTGCTTCTGATCAATGCATTAACAATGAATACATGGTGCACTTCACTCAATAAGCTACGTTCAGGAGGACAGCCTACTGCCGTAATGTCCTGATTCAGAAGGGGGCAGCTGATTGTTGATTGTCTCGTCGATATGAAGCTATGGGTCGCTGTGTGAAAGAGTAATGAATCATCAGAGACTGTTACTCGCCATCTCTTCTTTATCCGGGTGACTGTCCGTGAGTTTTCTTCACTGGGGAGGGGAAACGGCTCATTCATTCAGAAAGTCACAGCGCTGGTTAAAGAATGAAAGTTTATCCAGCTGAATGATTTCTACACCTGTActccctttttttg

Function

NR:

description
PREDICTED: Krueppel-like factor 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251405.3 True 3271 mRNA 0.47 3 6291800 6298905

Neighbor

gene id symbol gene type direction distance location
LOC103043630 LOC108437608 coding upstream 3732 6276799 ~ 6288068 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding upstream 33343 6242027 ~ 6258457 (+)
LOC111195362 NA coding upstream 144281 6146685 ~ 6147519 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding upstream 456174 5817984 ~ 5835626 (+)
ap5b1 ap5b1 coding upstream 520503 5765449 ~ 5771297 (+)
elk4 elk4,LOC108437624 coding downstream 6889 6305794 ~ 6325915 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding downstream 405191 6704096 ~ 6724573 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding downstream 459303 6758208 ~ 6801469 (+)
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding downstream 553604 6852509 ~ 6883415 (+)
LOC103040557 yod1 coding downstream 684708 6983613 ~ 6987964 (+)
G187610 NA non-coding upstream 113170 6105192 ~ 6178630 (+)
G187584 NA non-coding upstream 392075 5888833 ~ 5899725 (+)
G187583 NA non-coding upstream 405798 5885802 ~ 5886002 (+)
G187493 NA non-coding upstream 447970 5759517 ~ 5843830 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 528309 5701793 ~ 5763491 (+)
G187640 NA non-coding downstream 1947 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 3861 6302766 ~ 6304222 (+)
G187637 NA non-coding downstream 18909 6317814 ~ 6334469 (+)
G187647 NA non-coding downstream 38207 6337112 ~ 6340403 (+)
G187650 NA non-coding downstream 44262 6343167 ~ 6388440 (+)
p3h1 NA other upstream 492821 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2896957 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3289785 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5196463 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5753584 510575 ~ 538216 (+)
LOC103029365 NA other downstream 778260 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 893249 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1813098 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1957891 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2984890 9283795 ~ 9819955 (+)

Expression


Co-expression Network