LOC103043936 (nucks1,nucks1a,LOC108255091,LOC107654381)


Basic Information

Item Value
gene id LOC103043936
gene name nucks1,nucks1a,LOC108255091,LOC107654381
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6242027 ~ 6258457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251407.3
TGGTTGCGCGAGGGCTGcagtttcagtttgttttattcACCATTTTGAGTAGCTGAAGgtactaaaaaaaagagaaaattttaattaaagccTATTTAGCTATAGGCTTTTACAGATTTACACaagggagaggagagaagagaggggggtcggtttaattattattttattattttattttttcctctctctctttataagAGACGTCGCATTCAGGTTGCCCGTTTGCTGAAAACCCCCctcctttttttgctttttattttctagACTTTTTTTGTGTTGCTCGTTTAGCCGCCGATCTGAGGGAGCTCCACTACGTTCCTCCTGCGAAAAAGGCTTTAAAACAATGTCGAGACCAGTGAGGAACCGGAAGGTGGTGAATTATTCACAGTTCAATGAATCTGATGATGGAGAGGACTACGAGAGAAGCTCCGAAAAGCCCAAGAAGGTGCGTGCAGCCCCCCGTGAAATCAAGCACAAGAAGACCAAGAATTCCAAGGAAGAGAGCGAGGACTCAGACGAAAAGCTGTCCAAATCCAAAAATGATTCAGCCGATGATTTTGGTAGTGATGAAGACAATGACTttggaggagaggagaaagaggacgGTGGAAGCGATTACGAAGCTAAGAAggggaaaaagggaaagaaaagcaAGCCGGAGAAACCTGGCAAAAGATCACTGAAGAGGAAACGAGATTCTGACGAGAGTGACGAGGACAAGGAGGTGAGCAGGAAGCCGAGGCAGGTGAGGCAAGCTGCCTCTAAGGCTGCatccaaacagagagagatccTGCTGGGAGGAGGAAGTGAGGATGAGGAGAAGGACGAAGAGGAGCCGGCCTTCGTGGACCAAGAATCCGGCAGTGATGAAGACTTCATGGTGGATGATGACGATGACAGTGACTATGGCCGTTCCAAAAAGAAGGGCAAGAAGATCGCCCCGAGAGGGAGGAAAgtggagaagaaggagaagaagtcCCCCAAACCCAGGCTAAAGGCTACAGtcacCCCAAGTCCAATGAAGGGCAAGGGAAAGGGTCGCCCGAGCGCGGCTAAGGCCCTGGAGAAATCCTCGCccaaagaggaggaggagcccGAGAGCCCGGTGGAGGACGAAGAGGAGGACGAGGTGGAGAAGAAGGACTCTCCGCCCCCCGCCAAGAAGAAGGAGGACGCCcctgaggaggaggaagaggaggaggaggaggacggtTCAGAAGAAGATGCTCCATCTGGGGAAGACTAGCCAGGCTCTGAATGGCAGCTCCCCTCCCCATCTGCAtctcacttttctctctctcttctctgacttccccctctttctctctctctgtctctctctacctctccctctctctttctttcatcaTTCTTTCATTCTATCTCTCTTGTTATCTCTTCTcccctcttcttctttctctctcttgctttgttTCTCTTCTGAGGGTTTTGTTTTCAGAGTCTGTGGTGACCTGGCTCAATGGTTTGAACTATTggattgattttaattttttttttggtttgttttattgttcttttttttattttttttaacctataAATTCCATATCACAAACCGCATTGTCCCAGGACGCGTTAGACTTAACGGCATGTATGTAAGTGCAGGAGAATGTGACTGAACTGAACTGGTTTTATTTATCCGTATAAAGCTATGaagatcccccccccccccttatgTTTTAGCTGATCTACTTGCGTTTAAGATGATGGATCGCTGCTTTAGACGGTTATTTCGCCGACGGTTACAATTCTTTTATGTTTCTCTTTTAAACTACATCCCATTTCTACAGCTCAGCTTTATTGGGGTCTCTCCCCACAATTCACTACAGTGAAATTCTCAGCTTTGGTTTTGGAGTACCCACAGGATCCACAGGATGGCAGGAGTGTTTTCCTTGAGTTTACCATTAAAGGGGAAAAACTACCACTTTACTACATCAACCACTGACACTCGAATTTAAAtttctgctgattttagttgttgaaatagaaatagaaagaaagtcATTCAGAGTGAGTTAAATTATTTGTGAAATTGTTCATTTTAGGGAAAAGTTTCAGCTCATTTCTTTACAAGGTGCTGGTGGTTcagttatacagctctggaaaaaataagagatcacttcagtttctctgattttgctatttacaggtttatgtttgagtaaaatgaacatttattttattctataaactacagaaaacatttttcacaaattccaaataaacatattgtcatttaaagcatctatttgcagaaaatgagaaatggcataattaacaaaaaagatgcaaagctttcagacctcaaataatgctaaacaagaaaacaagttcatataagatttttagagttcagaaatcaatatttgagttttcatgcatcttggcatcatgttctcctccaccagtcttgcacactgcttttggataactttatgcctttatctTACTCTttattacattccagaggttttcccagagctgtatattaatgtagTCATTTTTTCCCATCCTTATTGACCAGCCAACCTAACCTCCTAtacacacttcttttttttttctttttttggtatGTTTCCAGTTTTATATGTCatgttaataatagtaatataatatcgTAAATCTAGAAAAAGGACaacaaaactaacaaaacaaaagctTTCTTTAgggaaatatgtttttcttcctttttaatgattttaaaactagcataaaaaaaaaaaaaaaacgatgtcTCAGTCTATCAAGCAGTATATCctctttatatttttctctttattccATGTAGTATATTATCTGTATAAAATCTGTGGGGGAGctttcttttaaaaactttacaaaataCATCTTACTTTCATCTGACCTTTTTCTCTATGGAACAGAACCTTTTGCATAATTTCACAACCATTctgaatgactttttttttttcttaacagcAGTGTTACCATGTGATCTTTCCTGAGTTGGTGGTGATTAAGTTGACGTTGGTGGTGTTATTCCCCTTAAACGCAGGTAGATTGTAGATTCGTAGGGAAAAAGACAGCATTAGGAAACACTGGTGAGGCTTATTTGTGAGTCGGTTGTGAAGTGACCCCTGGATGACTAGCAGTTATTATATTCAATGTAAggaaatttgtgtttggtagTTCTGTTGTGTTTGTTGCAATGCTTCTTGGCTGTAAATCATATAAAGTTGGAAAACCTGTTAATTCCCATGTTTAAATGGAGCCACATTTGTAAGGAACTTGCATTTGTGAGCTGGGCAGCAGAGCTGAGTAGTATTTGATTTGcacccatgaaaaaaaaaaaaattgtcaagtCTTCTCTGCCAATGCCAAACAGCTCATTTTGCTGTTGCTAATGACACTTGTTCTGAGCTTCTGGTACCCCTGCTTGGAAGCGTCTGTGAGCATGGGCTCTGCTACAGTGGTCAGTAGGTGTCTGCTTCAAAAATTGGCATCGCACAACTTGGACAAGCTGGTATTTGGGGGGGGGGAGTTGCGACATTATTTGGATTGAGCCCTGGTACCAGCATTTTCAAACTGCTGAAGGCTCTAAGTTCCTTATAATGAGGGATGTCAGAGACTCAACAAGAAGACGACACTCGAAGATGATCACCAAGCGATTAAATGAATAATCGGAGAATAATCATCTGTTTGGCATTGGCAGAGAAGATTTGgctctttttttgctgttaatcCTATAAAAGcatgttccttacaaatgtggatttatttaaaagagaaattagCTAATTAGAAGTCTTTCCAACATGTATAAGatttatttccaaaaaaaaatacaacaaatgtATCAAACCAAATCTACTGACCACAAATAACCTTACTTTTTGTTTGCTATATGCGCGCACactatctttttttattattattattattaattcttagctttatttttgttttatatctattttttttttttttttttaatcttgatCAGGATATGATCAATGACCGACAGCATTTCCTCCGTCAGTGACCCGGATTCCCACagtgaaatgtaaaatattcatgtttttttttattttccacttTATTGTAGTATCAGCTGCCAATCAGCTGCCTGTatctgattgattgattgatgttaGGAAAGCAGCAGGCCTGGATTTCATGCTGGGtctctttgttttttagttttttcacgGTTTTTATCATTGCCTGTGGTGTTGAGGTCGTTTTTTTGGCAAGGTACTGTCGACAGCTTTGGCCATCTCGTCCCTCCTCGACACGAGTTTTATTTTTCACCTCTTTTAGGAAAactcacttcttttttttttttttttttttttcattattttatttttattattattttatataattcagAAGAACTGTGCTGTTGTCGTAACTGGTTTTTACTGATGAACATGTTGGatgaaatgagttttttttttttttttttttttttttttttttttttttttttgattgtttgtttttttccccatccACATTTCCAGGTCATCTCATGTTGGGACTGTAGTATAAAGTTTTGACGTGCATCGCATgagtgcgtctgtgtgtgtgtgtttgtgcgcgcTCGGACGGAGCCTTAAGCAGTGTAACTCTATTGGAGGcgtttaaatgaaggttttgtgTGCGCCGTGCTTGCCTTGCAAAGCCTTGTGggtcttttatttctctctttatttcttttatttctttgctttttttttttttttttttaagctgaatgGAGCCCATGCAAGCTTTGCCACATTCTGGTTTCTGGCGTCAGAGGAGATAAACAGTGATAAACAGTGATGAATGACAGGGAAAGCACACTAGAACTTGAGCGGATAGACCCTAAATGATGCTGTACATGTCTAGAATGTTAAGCAAACTACCAATATACGAATAAATACCATAAATCAGACATCagaccttattattattatcattatcatctcTCGCTATAGTGTGATCTCAGAGTTTGGAAGGTTTCTGGAGCTAGTAGTCCCTGTGGATGTTTCATGTATCAGTAGAGTTTGTGTTTGGATTGGGGTTTTTAAATGCGTGTTCATTTCTCTGTAGAGTTCACTTCCGGATCGTTCCATTAAGCTGCTTTGTCCAGCTTCAGTGGGTGCTTTAGGATTGCCTACATGTTGGTGTGAGGAGTTCCTGATTTCACTGAAGTGTTCTGGACGCACAGGGCTTCGCTTCTCCTCATATGCATGAACGCACACCTTTACGGCAAAACTAGCATCCCGACACGGTTCAGTCTTTTGTGCCAGGCATCATAAGAGTACCCCCCCCCTTCCTCGCCCCGCCCCCTTCTCCCAGTGTGTCGTCTCTATTGGTTTTGAATCCACAAAtggtgaaacaaacaaaaaaaa

Function

symbol description
nucks1a Predicted to enable double-stranded DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and interstrand cross-link repair. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in brain; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1).
nucks1 Enables chromatin binding activity; double-stranded DNA binding activity; and transcription coactivator activity. Involved in several processes, including DNA metabolic process; cellular response to X-ray; and modulation by host of viral process. Located in chromatin; cytoplasm; and nuclear lumen.

NR:

description
PREDICTED: nuclear ubiquitous casein and cyclin-dependent kinase substrate 1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251407.3 True 5384 mRNA 0.40 8 6242027 6258457

Neighbor

gene id symbol gene type direction distance location
LOC111195362 NA coding upstream 94508 6146685 ~ 6147519 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding upstream 406401 5817984 ~ 5835626 (+)
ap5b1 ap5b1 coding upstream 470730 5765449 ~ 5771297 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 510683 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 724462 5508308 ~ 5517565 (+)
LOC103043630 LOC108437608 coding downstream 18342 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 33343 6291800 ~ 6298905 (+)
elk4 elk4,LOC108437624 coding downstream 47337 6305794 ~ 6325915 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding downstream 445639 6704096 ~ 6724573 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding downstream 499751 6758208 ~ 6801469 (+)
G187610 NA non-coding upstream 63397 6105192 ~ 6178630 (+)
G187584 NA non-coding upstream 342302 5888833 ~ 5899725 (+)
G187583 NA non-coding upstream 356025 5885802 ~ 5886002 (+)
G187493 NA non-coding upstream 398197 5759517 ~ 5843830 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 478536 5701793 ~ 5763491 (+)
G187640 NA non-coding downstream 42395 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 44309 6302766 ~ 6304222 (+)
G187637 NA non-coding downstream 59357 6317814 ~ 6334469 (+)
G187647 NA non-coding downstream 78655 6337112 ~ 6340403 (+)
G187650 NA non-coding downstream 84710 6343167 ~ 6388440 (+)
p3h1 NA other upstream 443048 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2847184 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3240012 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5146690 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5703811 510575 ~ 538216 (+)
LOC103029365 NA other downstream 818708 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 933697 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1853546 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1998339 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 3025338 9283795 ~ 9819955 (+)

Expression


Co-expression Network