cldn19 (cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733)


Basic Information

Item Value
gene id cldn19
gene name cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5817984 ~ 5835626 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251410.3
TTTTTCCCTTATTGCTGCCACTCGGCCCACCCCTCAAGCACCATCCCGCAGTCCTACAGGAGTGTGACAACAGCAGCTATGCAGTCTCCAGAGCAGCTCTCAGCCCGAGCCTAACCAAAGCAAATCCTCTCTCTAGGGCCACCTAGAGTACCCCAAGGCTGGGGGGCAACTCTGAGAGGAGGCAAGAAAGCAAGAAAGCAAGAAGACTAGAAGCTCCCATCAAGGACAGTGACTGTTTCCTCTCCTGATTGATGCCAGTCCTGGGGACAGAAGTTGGGAGACGCCTCCAAATGCCATATACTGAAAGTGCCGTGAGTGACAAGAGGACACAGCTGCAGCAAGTGACAGGAAaggtggaaaaaagagaaagaaactgtTTCCTTTCACTTGTTTGATTCAGTTTTGCTCGCTTGAAGTGCCTGGGGAACCTTGAGGACACCATCTGTTTGAATGTCTTTGTGGGAAAGTTCCTCATCAGAACAGGTGTCTTCGTAGAGCAGTACCTTGTTGCAAGGTCTAAGAATTACAACCAAATTACAATTTACGGAACTCAagctaggttttttttttaaactcacacAACTGAAATCCCAACAAAGAACAACTCGAAATAAGTATGGCGAACTCAGGATTTCAGCTCCTGGGCTACTTCTTGGCTTTGGGAGGATGGATCGGCATCATCTCCACCACAGTGCTTCCCCAGTGGAAGCAGTCTTCGTACGCAGGGGATGCCATCATCATGGCAGTAGGGCTCTATGAAGGCCTTTGGATGTCTTGCGCATTCCAGAGTACGGGACAGGTGCAGTGCAAGATATTCGACTCCCTGCTCTCGCTGGATATACATATCCAGACATGCCGAGCGCTGATGGTCATTTCAGTGCTGATGGGATTCATCGGCATTATCGTGAGCGTCGTGGGCATGAAGTGCACCAAGGTGGGCGACAACAACCCATCCACCAAAAACAAAATCGCTGTGGCTGGAGGAGGGCTGTTCCTACTCGCAGGTGTCTGCACACTGGTGTCGGTGTCCTGGTACGCTACACAAGTGTCCTATCACTTTTTTGACCCCAACACACCTGCGAATGCCAGGTATGAATTTGGCTCCGCCCTCTTTGTGGGCTGGGCGGCGGCCTGCTTGACGATGCTGGGCGGCTCCTTCCTCTGCTGCTCCTGCATCGACGATGAAAGAAGAGGGCAGCAGTACTACCGGCAATCACAACCCTCTACAGCCAGGGAAGCAAATGTTAAAAGTTCTCCACCAGACAAAGGGGAGCAGTACTTGTAGTTTGGGAGAGGGGCGGCTCCGTTGGCCTCACGCTGTGTTAGATTTTGGCAACAGTCAAGACACTCTCACACttggtaataaataaataaagaacgaACAAATGTTACGTTTGGTTAAACCAGCGACATTTAAACTGCcattaaagtttaaataaacagtaagtaatttaaaaaaaagcaatgatgGTATATGGTAAAGTGTAATGCATAAGATAAGATGCGTAAGAAATGGCATGAAACCCATGATGTATTTctgttataataaaatacaaaaaaaaccccaatGTGTTCAACTCAATTACTGTTGTAAATGCTTatgaataaatacttaaaagcttaaaaacacatatattgaTATTCATATGGATAATGATATtgctattgatttatttttgattgATATTGTGCTGTATAGGCCAAGCTAGCTAGCACTGCATCATCATACGAAAGACTCTGACCAGAAATTCAACATAGAGTGAGCCAAAAGTTGGGTCTTTGGATGGTCAAATCCACAATTTAAATTTCCTGGAGTTTGGTTTGCTAAAGTTGCTAAGTGTTAGTTactttgattgattgattgattgattgattgattgtttgtttatttgtttgtttggttatttgtttattcgtttgtttgttttgtaataTCATTAGACCTCAGTTGCCATCTGAAATGTATCTTCTCACCTTTCTGAGACTTGATTCAGGGTACGTAATGATGCATTTCCTCAGTTATGCAAGTATGAACTGTTCCTGTGTAGCGTAAtaccaatgatttataattaTAACCAGGCTTTgactcacactgtctctttattttttactttttctttaatgCTAATTTGTCAAATCCAAAAATTGTACTGGATTTCCATTCTCTGAGAAAGTATCTTTTACTGTAAAGTCCAATTGAAGCAACGCAGGAATTGCGATACACACTAGATCACTACATGTACACTACACACATGTAACGCAGTgtaatctcagtgttactgtatTGActggattttttgtttttttgtttacccCTGGTGAAAAATTGTAGTGCACAAATGATTTGTCTTGATGAATGGGAATTCCTGACCAGGTCTGGAATTATGTTCAGCTTGCATTGAAAGGCACTTATCTCTTGTGTTactcttgtttaaaaaaaaaagaagccgtTCGAGCCACGGCCAGTCCTTAGCTTGTAATCAAAATCTTATTaagttcagtttatttttcATCAAACATGTTTCCTAATATTCAAGTATGTATCATCTCCAATAAAGTATCAAcggttctgtttttctgttttgaaataaaataaaacgtaCAAAGCTAAA
>XM_007251411.3
TTTCCCTTATTGCTGCCACTCGGCCCACCCCTCAAGCACCATCCCGCAGTCCTACAGGAGTGTGACAACAGCAGCTATGCAGTCTCCAGAGCAGCTCTCAGCCCGAGCCTAACCAAAGCAAATCCTCTCTCTAGGGCCACCTAGAGTACCCCAAGGCTGGGGGGCAACTCTGAGAGGAGGCAAGAAAGCAAGAAAGCAAGAAGACTAGAAGCTCCCATCAAGGACAGTGACTGTTTCCTCTCCTGATTGATGCCAGTCCTGGGGACAGAAGTTGGGAGACGCCTCCAAATGCCATATACTGAAAGTGCCGTGAGTGACAAGAGGACACAGCTGCAGCAAGTGACAGGAAaggtggaaaaaagagaaagaaactgtTTCCTTTCACTTGTTTGATTCAGTTTTGCTCGCTTGAAGTGCCTGGGGAACCTTGAGGACACCATCTGTTTGAATGTCTTTGTGGGAAAGTTCCTCATCAGAACAGGTGTCTTCGTAGAGCAGTACCTTGTTGCAAGGTCTAAGAATTACAACCAAATTACAATTTACGGAACTCAagctaggttttttttttaaactcacacAACTGAAATCCCAACAAAGAACAACTCGAAATAAGTATGGCGAACTCAGGATTTCAGCTCCTGGGCTACTTCTTGGCTTTGGGAGGATGGATCGGCATCATCTCCACCACAGTGCTTCCCCAGTGGAAGCAGTCTTCGTACGCAGGGGATGCCATCATCATGGCAGTAGGGCTCTATGAAGGCCTTTGGATGTCTTGCGCATTCCAGAGTACGGGACAGGTGCAGTGCAAGATATTCGACTCCCTGCTCTCGCTGGATATACATATCCAGACATGCCGAGCGCTGATGGTCATTTCAGTGCTGATGGGATTCATCGGCATTATCGTGAGCGTCGTGGGCATGAAGTGCACCAAGGTGGGCGACAACAACCCATCCACCAAAAACAAAATCGCTGTGGCTGGAGGAGGGCTGTTCCTACTCGCAGGTGTCTGCACACTGGTGTCGGTGTCCTGGTACGCTACACAAGTGTCCTATCACTTTTTTGACCCCAACACACCTGCGAATGCCAGGTATGAATTTGGCTCCGCCCTCTTTGTGGGCTGGGCGGCGGCCTGCTTGACGATGCTGGGCGGCTCCTTCCTCTGCTGCTCCTGCATCGACGATGAAAGAAGAGGGCAGCAGTACTACCGGCAATCACAACCCTCTACAGCCAGGGAGGCTGAGTTGTTGAGTGAGACTAGTTTCCCTGACTGACCAACCCCACCCCGCCTTTATTCGAGGACTGTCCGAgctccactctctctctgtccctcccCCCCACTTCCTCCACCCACCTATTCCAAATTTGGACCTTTGTCTCTCCGCTATCGCCTGCGTTGCACCCTTTAAAAACCTGTGTGCCTTTCATCAGCACCTGATCAATAAAAACCATGAACCATTGTGCGTTGAACCATTGTTAGcccattgttgtttttgttgtcgTTGATGTTGGTGTCGCGTCCCCGCCCTCCTCCCCTTCTCGTCTCGTATCCCTAAAAACCACACCTCTGTAAATATGTACTGTCCTTACACATGGTTTTATGTGAAATATGGGTGGATGGATTTAAGATGTCGTAGCATATatgcaaaaaaatttaaaaaatccaataaataaaaacaacaccaaCTGTCTGTATCCCACTTTACCTTTTATGTTCTGTTATAACACATGTATTACATAAGCTATAAGCTATAAGAAGCTGCATTGTTTTTCTGACCGGTGGACGTCCTGAGATCTATCTGAGAAGAAGGTCTATCAGAAGCCCACTGTGTTCAGGTCCTGTCTGTAACTGATAAGCTTACTGAAAcatgttcttttcttttaaattgcaGAGCAAATGTTAAAAGTTCTCCACCAGACAAAGGGGAGCAGTACTTGTAGTTTGGGAGAGGGGCGGCTCCGTTGGCCTCACGCTGTGTTAGATTTTGGCAACAGTCAAGACACTCTCACACttggtaataaataaataaagaacgaACAAATGTTACGTTTGGTTAAACCAGCGACATTTAAACTGCcattaaagtttaaataaacagtaagtaatttaaaaaaaagcaatgatgGTATATGGTAAAGTGTAATGCATAAGATAAGATGCGTAAGAAATGGCATGAAACCCATGATGTATTTctgttataataaaatacaaaaaaaaccccaatGTGTTCAACTCAATTACTGTTGTAAATGCTTatgaataaatacttaaaagcttaaaaacacatatattgaTATTCATATGGATAATGATATtgctattgatttatttttgattgATATTGTGCTGTATAGGCCAAGCTAGCTAGCACTGCATCATCATACGAAAGACTCTGACCAGAAATTCAACATAGAGTGAGCCAAAAGTTGGGTCTTTGGATGGTCAAATCCACAATTTAAATTTCCTGGAGTTTGGTTTGCTAAAGTTGCTAAGTGTTAGTTactttgattgattgattgattgattgattgattgtttgtttatttgtttgtttggttatttgtttattcgtttgtttgttttgtaataTCATTAGACCTCAGTTGCCATCTGAAATGTATCTTCTCACCTTTCTGAGACTTGATTCAGGGTACGTAATGATGCATTTCCTCAGTTATGCAAGTATGAACTGTTCCTGTGTAGCGTAAtaccaatgatttataattaTAACCAGGCTTTgactcacactgtctctttattttttactttttctttaatgCTAATTTGTCAAATCCAAAAATTGTACTGGATTTCCATTCTCTGAGAAAGTATCTTTTACTGTAAAGTCCAATTGAAGCAACGCAGGAATTGCGATACACACTAGATCACTACATGTACACTACACACATGTAACGCAGTgtaatctcagtgttactgtatTGActggattttttgtttttttgtttacccCTGGTGAAAAATTGTAGTGCACAAATGATTTGTCTTGATGAATGGGAATTCCTGACCAGGTCTGGAATTATGTTCAGCTTGCATTGAAAGGCACTTATCTCTTGTGTTactcttgtttaaaaaaaaaagaagccgtTCGAGCCACGGCCAGTCCTTAGCTTGTAATCAAAATCTTATTaagttcagtttatttttcATCAAACATGTTTCCTAATATTCAAGTATGTATCATCTCCAATAAAGTATCAAcggttctgtttttctgttttgaaataaaataaaacgtaCAAAGCTAAA

Function

symbol description
cldn19 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in renal hypomagnesemia 5 with ocular involvement. Orthologous to human CLDN19 (claudin 19).

NR:

description
PREDICTED: claudin-19 isoform X2

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251410.3 False 2612 mRNA 0.42 5 5817984 5835626
XM_007251411.3 True 3265 mRNA 0.42 5 5817986 5835626

Neighbor

gene id symbol gene type direction distance location
ap5b1 ap5b1 coding upstream 46687 5765449 ~ 5771297 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 86640 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 300419 5508308 ~ 5517565 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 331571 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 877919 4936994 ~ 4940065 (+)
LOC111195362 NA coding downstream 311059 6146685 ~ 6147519 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 406401 6242027 ~ 6258457 (+)
LOC103043630 LOC108437608 coding downstream 441173 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 456174 6291800 ~ 6298905 (+)
elk4 elk4,LOC108437624 coding downstream 470168 6305794 ~ 6325915 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 54493 5701793 ~ 5763491 (+)
G187484 NA non-coding upstream 176928 5640822 ~ 5641056 (+)
G187477 NA non-coding upstream 316108 5499104 ~ 5501876 (+)
G187475 NA non-coding upstream 322570 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 326727 5490085 ~ 5491257 (+)
G187583 NA non-coding downstream 50176 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 53207 5888833 ~ 5899725 (+)
G187610 NA non-coding downstream 269566 6105192 ~ 6178630 (+)
G187640 NA non-coding downstream 465226 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 467140 6302766 ~ 6304222 (+)
p3h1 NA other upstream 19005 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2423141 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2815969 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4722647 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5279768 510575 ~ 538216 (+)
LOC103029365 NA other downstream 1241539 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1356528 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2276377 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2421170 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 3448169 9283795 ~ 9819955 (+)

Expression


Co-expression Network