ap5b1 (ap5b1)


Basic Information

Item Value
gene id ap5b1
gene name ap5b1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5765449 ~ 5771297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251413.3
TCATGTGACATTTTCTGAACACGTGACATGAACATATCTGGAGGAGCTCCAGGGGAAAGAATGTACTCCTCATCTTTCATACACTGGTAGCTGAACTGTGTGATCTTCATCATGACGACCGGGAGCTCTTGGGATGAAagaatttctgcttttttattgaGCCCCTCACAGTTTTTGTCCCGCACCACCCCCGAAACCTTTCTATCAGAGCTTCTGGATGAACTGAGGGATGACAAGGCCAATGACTACAAGAAGGTACTCCTATTATCTGCTTTACTGGAGCATCCTACAGTCCTCTGCCCTACGGCCTCAGCGGGAGAGGGGACAGCGCAGGAGCTCATATCAATCCTCGCCTTAACTCCACAGAAATCCATCAGTCTGAAATGTCACATTTTGCTGGCTGTTACCAACGTCTTAATATCTACATCTTGTTTGGCCAGTCGAAAGAAGGTAGCAGAGGAATACCTGGACCTGCTGTTTAAAACGATTCAGGACACAAATGATAACGCAGGTGGGCTGGCTCTTCATCCCATCAGATCCACGGCCTGTGAGTGTCTGAGAGAGATGGAGTCCTGCAACCCTGGCCTCCTGTCCCAGAAGTTGGAAGCCTTGTACTACCTAAAGCAACAGGAAAACACTGTTCTCCATCAGTCGTACTCTATGCTGTATACGCAGAGTCTCAAGAATGCCATTCGTCTCCTGACTCAAGAAAAAGATGTGGATAACGCAAAGCTTAAGAGCACCTTAACTGGAAACGAAGGCTTTTTGTGGAAGACGATAGAATCCTCGATGTATACGCTGCCATTCAGCACAATGACGCAGGTTCCACAGCTTCCATCTATACTGGATTGCAAAGAGCTGAAGTCTATCTTGTCTTTGCTCTTGGAGGAATCTTACCTGATGACTCCCGTCTCCCAGGCCAGTTTGCTTCGAGGATTGGTAGAGATCGTGGCCATGGTTCCAGCCATCTCCCCGGCCATTTTCAAATCTCAACTCTTGCGCCTCTTTGGGACAGCCGAGGTTGAGTTGATGCATGCTACACTGTTGATGAAAGGCACATTTACAGATAGCCTCTTCACAGCCGAGGACGAGCACTTCTTACTCAAGCGCCTTGTTGGCATGGCACAACATCCACTTCTAAGAACTCCTGAGAAACTGTTCTACATGAACTGCATTCTACATTTCCCTGAGAACAGACCCATCTCCTGCCCTGGAGAAGAATGCTTACCTGTGCTGGTCACGCCTCAGCTCACATTGTCTCTCCTACCTACCGTGTTTAATGACAGTGCCACCATGCTTTGCAGACTAAACCTACTATGCCTGGTCCACCTAGAGGCGGACGAAGAAGAGGAGGGGAAAGGCCTGGCCTACTTGTTTGACCATCTGGTGGCTATGCTCAAAATCGTAGACAATCAGGGGAGCAGAGAGATGGTAGTGACCTCTTTTAAGGcaatctttatttttctcagGCACTTTAATCACATGGAGAAGCTGTCTGAGAAGATGGTCAACAGCTTATGCGACTTGTATTCCAGGCACTGTCGCCTTGCTCCTAACCTGATCAATCTTGCTGACCGAATCCAGGAAAGCTTAGAAGAGTCCCTCTGGTCAGTGCATTTGTTAGAAGCACTTCAAAAGTGTGTGGTGGCGATGCCTCCATTACAGCTGACCTTACAGAATCTGAGTTGGCACCTTAAAATCTTGGCACGAGTAGCGCAAGAGAGCCAGATCGTCCAGAGGGACACAATCTGCCTCCTTCTCAATGTCCTCATCAATTCAAATCTCTGTGAAAGGGGCAACTGGAAGGTCGGCAATGCAATTCTTGCGGTTTGCCGCCAATTGCTTCAGCATCCCACCTTGAATGAGATGTTTATTGAACTGGCAGACCTTCTGCAGTACGTGACCAAACATTACGAGGACACAGACATTCAAGACCATGCACGGTTCTACTACACCCTGCTTACCAACCTGTCTTGGGAAAAACTAGGGGGTGTCCTCGCCATAGGTCCAGAAGGAGGGCAGGCTAAGATTCGGTCGTTGTCAGCCATTGTGGCTGAAAGCGATGGGCTCACAAGCTGCTTGACTGTTCATCAGACTGAGGGATGCGTCGTGCAGCTGACCAAAATCCATGAGCACGACTTTCAGAGTGCAAACACCAGTACAAACACTTTAGAGACTCTGGAAAACCTGGAGACTGTGGGTGGGCAGATTAATTTGTCTACCAAGGTCTACCAAGAGCAGTTCAAAACCCCAGGCTTTGCATCCGAGATCACCTTACGGTATAACCTGACTCATGCTAATGTGAAAGATCCAAGGTTTGACAGGATGTTCACAATTTGCCTGCACTTTGACTTGAACGATTCTCACTACGCAGACGTCAATGATATCTATGTCCCTTGCCTCTTCAGAGACAGGAAACCTCCACAAGTTAGCCTGAAGTTAAAGCCGTATCAGCCATACCCAACAAGTCTACAGTTGAGGGCCATATTCACCACAGAAGATGGCCTGTCTTGGCACACTCGACTACCTGACGTACAAGTATCATTTCCTGAAATATTCCTCCCCATACCTGTGCCACTGAGCACGTCACATGAGTTCAAGGAGGACGTGTTTGACCATATTTGGAATGCTACATCCTCCGGTGATCCTAGCACTTCAGCGACTAGCCTGTTTTGTTTTAAGACCGGCAGCGACACATTAGCAGATTTGATAGAGACTCACTTTAAAGGTTACCTGATAACAAGGTCACAAGATCTCTCCAGTGTATGGaaagtcttatttttccttCCACCCCAGTTTCATATTCTGTTAATGATCAGACAGGCTGAGGATGCTGTTCAGGTCAGCATTGCGACGGACAACTGGGAGCTGTTACCACATGTCAACTCTTACCTACAAAACATAACTGTCAactgcaacaagacaatgaccggATTAACGTTAAATCCTCAAAATGAATTGTAGCGTAGTGTCCACCAAATGAGGTCCTTGTGTAACCTGGCAGcacagaccaccatgcccatttTAAACTCTTAAGAGCCGGTTTACCAGAGGGGGATTAATACTACAGagtattttgaatggagattttccaataaaaaaagaagatataGTCaaaaactaggcttaatccctgtcttgGCAACTAATCCTAGAGGGAGTCCTGCagttattcttttcttttttttattggagaaTCTCCATTCTGAATGCTGTGTAGTCTAGGACTCTAGTCAAGGCTCTAACCTCTAGAAAGACTTGTTCATTCACTCAGTTCAAGTtcagtacagtaaaaaaaaaaaaaataaagagacaaaactattaaaaatattgtaacattatagccatgtgtttgattttaatatattttgattttatcatgtttcataTCGGTTTAATTGCACTCACACtttatgtttttgatgttttttgtaaCGTCTGTCATAAACCTTGTGCTAATTGTCAAATTCAGCCAAATACAAAGTACAGTGTACAGTTGATTAtacaatatgtaaaataaagtcATAACTGATGTAATCCTTA

Function

symbol description
ap5b1 Predicted to be involved in endosomal transport. Predicted to act upstream of or within protein transport. Predicted to be part of AP-type membrane coat adaptor complex. Orthologous to human AP5B1 (adaptor related protein complex 5 subunit beta 1).

NR:

description
AP-5 complex subunit beta-1

GO: NA

KEGG:

id description
K19022 AP5B1; AP-5 complex subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251413.3 True 3543 mRNA 0.45 3 5765449 5771297

Neighbor

gene id symbol gene type direction distance location
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 34105 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 247884 5508308 ~ 5517565 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 279036 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 825384 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 870408 4887519 ~ 4895041 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 46687 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 375388 6146685 ~ 6147519 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 470730 6242027 ~ 6258457 (+)
LOC103043630 LOC108437608 coding downstream 505502 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 520503 6291800 ~ 6298905 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 1958 5701793 ~ 5763491 (+)
G187484 NA non-coding upstream 124393 5640822 ~ 5641056 (+)
G187477 NA non-coding upstream 263573 5499104 ~ 5501876 (+)
G187475 NA non-coding upstream 270035 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 274192 5490085 ~ 5491257 (+)
G187583 NA non-coding downstream 114505 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 117536 5888833 ~ 5899725 (+)
G187610 NA non-coding downstream 333895 6105192 ~ 6178630 (+)
G187640 NA non-coding downstream 529555 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 531469 6302766 ~ 6304222 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2370606 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2763434 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4670112 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5227233 510575 ~ 538216 (+)
G186231 NA other upstream 5650362 107396 ~ 115087 (+)
p3h1 NA other downstream 8594 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1305868 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1420857 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2340706 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2485499 8256796 ~ 8271712 (+)

Expression


Co-expression Network