fbxo2


Basic Information

Item Value
gene id fbxo2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5508308 ~ 5517565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251419.3
CATGTGTCAGTGAgatcacacacccacacccacacacacacacacacacatatatacaaggGCTAGAAGAGCAACTCAGCTGTGCTCAGTCTCTGCTTTCCTTTCGGAAAATCTGTCTGTTTTCTAAAATGGCAAGAAATCTTCTCAAAAATCCAAATGGAGAGGAGAATATGGAATACTGGGAATTAACGGAGAACGGGGGTGACGAGTGGCGTGTGGAGGAAATGCCTGGGGACTGTGGACATGCCTTTACTGATGACGCCACAACCAAATACTTCACCACCTCTTTTGAGCTGTGCCTTAAGAAGCAGCTGATTGACTTGTTGCCAGAAGGCTACAGCAGTGAGGAGCTGGACGATCAGCCAGCTGTCCATGTGGAGGACTGgtactgTGGCCGTACAGACTGCGGGTGTGTTTACCAGCTAACAGTGTGTCTGCTTGACGAGAATAAGGAGGTGATACAGGAGTTCACACCGGAGAGTGTGACCCTTGACCCTGACACTGACGACTGTTCTTGGAAACAGATCACCCACACGTTTTCTGAATACGGCCCGGGCGTGCGCTTCATCTCTTTCGAGCATGGTGGTCAGGACACCAAGTACTGGCAAGGCTGGTTTGGAGTGAGAGTAACTGGCAGCTCTGTTACTATAGACCTTTAAGAGgagcagagacagacagagagactaCCTTATGTAGCTTAAGCCTTGAATAGCTgcgttatatgtatatatttttgtttgtttagctaaagtaacacatatttttttattaatctgtaCTAACAATAAACCAAGTATCTCTCGAACACTTAGCCAGCTAGTTTAACCAATTTTAGCAATATTAATGAACCCTGAAGTAAACCCTTATTTAAAATGACCTCATCATGCTTGCTCCTGCTCTTTCAAACACCCACACAGAAACCTTATTGGTCAACCAAGCAtgtcactctctcactgtcCCTCACTTTTCTTTTGGTGAGCGCTCTCTCTATTACATGCttgatcaaaaaaaaaagataatttgcGGGTATCAGGAAGCCTCTAATAACATGTGGGAGACTCCTTGAACTTCTGTGATAAGAGGGACCTCTGCACTTAGTCTGAGTCTGACATGGAAAATGAATAATATGCAGTAGCTTACAGAGCAAAATGCACTAATAAAAAAGGTGCTGCCAGTGAA
>XM_022682300.1
TTTATGCATGCTTTTAGGAGGGGTTGTTAGGGAATGAATGGCCTCTGTTTCTAGGGCCACATGGAGGTTAACTATaaaccctccccctttctacaCTCTGAGAAGGGCTCCACGGCACCAACAGTCTGACAGGAAAATCTGTCTGTTTTCTAAAATGGCAAGAAATCTTCTCAAAAATCCAAATGGAGAGGAGAATATGGAATACTGGGAATTAACGGAGAACGGGGGTGACGAGTGGCGTGTGGAGGAAATGCCTGGGGACTGTGGACATGCCTTTACTGATGACGCCACAACCAAATACTTCACCACCTCTTTTGAGCTGTGCCTTAAGAAGCAGCTGATTGACTTGTTGCCAGAAGGCTACAGCAGTGAGGAGCTGGACGATCAGCCAGCTGTCCATGTGGAGGACTGgtactgTGGCCGTACAGACTGCGGGTGTGTTTACCAGCTAACAGTGTGTCTGCTTGACGAGAATAAGGAGGTGATACAGGAGTTCACACCGGAGAGTGTGACCCTTGACCCTGACACTGACGACTGTTCTTGGAAACAGATCACCCACACGTTTTCTGAATACGGCCCGGGCGTGCGCTTCATCTCTTTCGAGCATGGTGGTCAGGACACCAAGTACTGGCAAGGCTGGTTTGGAGTGAGAGTAACTGGCAGCTCTGTTACTATAGACCTTTAAGAGgagcagagacagacagagagactaCCTTATGTAGCTTAAGCCTTGAATAGCTgcgttatatgtatatatttttgtttgtttagctaaagtaacacatatttttttattaatctgtaCTAACAATAAACCAAGTATCTCTCGAACACTTAGCCAGCTAGTTTAACCAATTTTAGCAATATTAATGAACCCTGAAGTAAACCCTTATTTAAAATGACCTCATCATGCTTGCTCCTGCTCTTTCAAACACCCACACAGAAACCTTATTGGTCAACCAAGCAtgtcactctctcactgtcCCTCACTTTTCTTTTGGTGAGCGCTCTCTCTATTACATGCttgatcaaaaaaaaaagataatttgcGGGTATCAGGAAGCCTCTAATAACATGTGGGAGACTCCTTGAACTTCTGTGATAAGAGGGACCTCTGCACTTAGTCTGAGTCTGACATGGAAAATGAATAATATGCAGTAGCTTACAGAGCAAAATGCACTAATAAAAAAGGTGCTGCCAGTGAA
>XM_022682301.1
CAGTCTCTGCTTTCCTTTCGGATATCAGCATTGTGTTCATCTAAACAGGCCCAGGATTCCCACTGAGAAAATCTGTCTGTTTTCTAAAATGGCAAGAAATCTTCTCAAAAATCCAAATGGAGAGGAGAATATGGAATACTGGGAATTAACGGAGAACGGGGGTGACGAGTGGCGTGTGGAGGAAATGCCTGGGGACTGTGGACATGCCTTTACTGATGACGCCACAACCAAATACTTCACCACCTCTTTTGAGCTGTGCCTTAAGAAGCAGCTGATTGACTTGTTGCCAGAAGGCTACAGCAGTGAGGAGCTGGACGATCAGCCAGCTGTCCATGTGGAGGACTGgtactgTGGCCGTACAGACTGCGGGTGTGTTTACCAGCTAACAGTGTGTCTGCTTGACGAGAATAAGGAGGTGATACAGGAGTTCACACCGGAGAGTGTGACCCTTGACCCTGACACTGACGACTGTTCTTGGAAACAGATCACCCACACGTTTTCTGAATACGGCCCGGGCGTGCGCTTCATCTCTTTCGAGCATGGTGGTCAGGACACCAAGTACTGGCAAGGCTGGTTTGGAGTGAGAGTAACTGGCAGCTCTGTTACTATAGACCTTTAAGAGgagcagagacagacagagagactaCCTTATGTAGCTTAAGCCTTGAATAGCTgcgttatatgtatatatttttgtttgtttagctaaagtaacacatatttttttattaatctgtaCTAACAATAAACCAAGTATCTCTCGAACACTTAGCCAGCTAGTTTAACCAATTTTAGCAATATTAATGAACCCTGAAGTAAACCCTTATTTAAAATGACCTCATCATGCTTGCTCCTGCTCTTTCAAACACCCACACAGAAACCTTATTGGTCAACCAAGCAtgtcactctctcactgtcCCTCACTTTTCTTTTGGTGAGCGCTCTCTCTATTACATGCttgatcaaaaaaaaaagataatttgcGGGTATCAGGAAGCCTCTAATAACATGTGGGAGACTCCTTGAACTTCTGTGATAAGAGGGACCTCTGCACTTAGTCTGAGTCTGACATGGAAAATGAATAATATGCAGTAGCTTACAGAGCAAAATGCACTAATAAAAAAGGTGCTGCCAGTGAA

Function

NR:

description
F-box only protein 2

GO:

id name namespace
GO:0030163 protein catabolic process biological_process

KEGG:

id description
K10099 FBXO2, NFB42; F-box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251419.3 False 1179 mRNA 0.44 6 5508308 5517565
XM_022682300.1 True 1205 mRNA 0.44 6 5511811 5517565
XM_022682301.1 False 1139 mRNA 0.44 7 5508394 5517565

Neighbor

gene id symbol gene type direction distance location
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 21895 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 568243 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 613267 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 623942 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 638519 4859869 ~ 4869789 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 207778 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 247884 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 300419 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 629120 6146685 ~ 6147519 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 724462 6242027 ~ 6258457 (+)
G187477 NA non-coding upstream 6432 5499104 ~ 5501876 (+)
G187475 NA non-coding upstream 12894 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 17051 5490085 ~ 5491257 (+)
G187472 NA non-coding upstream 18478 5488960 ~ 5489830 (+)
G187473 NA non-coding upstream 20497 5487088 ~ 5487811 (+)
G187484 NA non-coding downstream 123257 5640822 ~ 5641056 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding downstream 184228 5701793 ~ 5763491 (+)
G187493 NA non-coding downstream 241952 5759517 ~ 5843830 (+)
G187583 NA non-coding downstream 368237 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 371268 5888833 ~ 5899725 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2113465 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2506293 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4412971 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4970092 510575 ~ 538216 (+)
G186231 NA other upstream 5393221 107396 ~ 115087 (+)
p3h1 NA other downstream 262326 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1559600 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1674589 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2594438 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2739231 8256796 ~ 8271712 (+)

Expression


Co-expression Network