LOC103023081 (LOC108441425)


Basic Information

Item Value
gene id LOC103023081
gene name LOC108441425
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4936994 ~ 4940065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251425.2
ttacctcaggaaactaatcccgtccggatagggctttagttttCATGTCATGTCTCAATCATCTTAACCTTAACCAGCTTGACCTGCATGAGCCGGCCAAGCTGTCCTCCTGTGCAACAGGATGATTGGATAAACAGCACAATAGTGtttttattaacaatattaaaatCGAATGTCATTAAAAACGTTAAACTGCTTTTCGTCAGAGCTCCTGAAATAGAAACAGCATGGATTTGAGCCGTAAATCGTGGCACTCTTTTAGGGAAATGAATTAAGTGGGCACTTTGCCGGACCGTCTGCCCAACAAACTCCCCGATACGAGCCGCTCTCTCGCACCTGCTCTCGCTGGATTTAtgaatgtggctgaattaaagaGCGGAGTGGTAAAAAGGCCCAGGCCTGGGTTTTATTGATCCATTCATTCATgcgatctgctgctgctgctgctgctgcgggtcAGGATTTacaagtgagtgagtgaggaggACAGTGATGAGAGCAGAGGGTGATGTTAGGGATGGACAGGTGACAGGATCTGACACCTCATACACAGTGGGGTATATAAAGCCAGGGTAGGAACAGAGAGGGGTATTAAAGCTCAGGGCTTCTGGTCGATCAGTAGACTGCTCATCTCCAGCTGAAGCGATGCTGTGGAAACTGTCACTGTCCTGTGCTCTCCTCCTCACAGTGCTGGAGCCTTTTCTAGGACACCCCATCGCACACTCGGCCGACATCATGTCCTACACGGGGCCTGtGCTGGTAGAGGAGGATCAGCTGGTCAGCCCAGAGGAACTGTCCTATTCTGACCAGGCACATCTGTCCCAGGCCGTCCCCTATCCAGCCCTCCTCACAGGAGACATCGACAGAGAagGTCTCAGAGCAGCCAGCTTTGTCCCCAGCCAAGCAGTGAAAGAGATCCTGCTGGAGAAACCTTTGCTGAACCCACTGAGCCATTTCCTGGGTGGCAGGAAGCAGTACCAGAAGAGAGGAGGAAACACAGACTGCTTCTGGAAGTACTGCGTCtga

Function

NR:

description
PREDICTED: prepro-urotensin II-beta-like

GO:

id name namespace
GO:0065008 regulation of biological quality biological_process
GO:0008015 blood circulation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251425.2 True 1026 mRNA 0.50 4 4936994 4940065

Neighbor

gene id symbol gene type direction distance location
tnfrsf9 NA coding upstream 41953 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 52628 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 67205 4859869 ~ 4869789 (+)
LOC103024549 LOC103024549,LOC108441419,LOC107756648,LOC107654396,LOC107592863,LOC107582410,LOC107654432 coding upstream 95229 4826094 ~ 4841765 (+)
LOC103025797 trim62,LOC107756651,LOC107712973,LOC107582411 coding upstream 142218 4727289 ~ 4794776 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding downstream 532417 5472482 ~ 5486413 (+)
fbxo2 NA coding downstream 568243 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 785278 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 825384 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 877919 5817984 ~ 5835626 (+)
G187400 NA non-coding upstream 64216 4872365 ~ 4872778 (+)
G187307 NA non-coding upstream 135088 4801106 ~ 4801906 (+)
G187305 NA non-coding upstream 136486 4797616 ~ 4800508 (+)
G187306 NA non-coding upstream 139438 4796928 ~ 4797556 (+)
G187281 NA non-coding upstream 353664 4549931 ~ 4583330 (+)
G187399 NA non-coding downstream 960 4941025 ~ 4949650 (+)
G187409 NA non-coding downstream 38319 4978384 ~ 4989227 (+)
LOC111195360 NA non-coding downstream 51476 4991541 ~ 5004012 (+)
G187473 NA non-coding downstream 547023 5487088 ~ 5487811 (+)
G187472 NA non-coding downstream 548895 5488960 ~ 5489830 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1542151 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1934979 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3841657 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4398778 510575 ~ 538216 (+)
G186231 NA other upstream 4821907 107396 ~ 115087 (+)
p3h1 NA other downstream 839826 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2137100 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2252089 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3171938 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3316731 8256796 ~ 8271712 (+)

Expression


Co-expression Network