LOC103025299


Basic Information

Item Value
gene id LOC103025299
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4810683 ~ 4824075 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251433.3
AATGGATCAGTGTCGAACAAGCAGCCGTGGCCAAATCCCACAGCCTGTAATCTAGTGCAGATTTTGCAAGTCGTGCTTTAGCTGCAAACATTAGCAATTAGGCTTTAGCAATACAGACAGCATGGCACTCTTCACCCTACCCTGCTGAGGAAGCAGCTCGACCAGTTTTAGTGTATGAtctacacaaacacagacacaccctTACCTCAGCCACGTGCTTCTCCACACAGCTCAGGTAAAGCAACCTACAGAGAGGCAGGGGCTGCCTGTAGAGACACGTCCCACACAGGGAGGGCTCGGggaatccacacacacacacacacacatgaggaTGAGCCCTTTCTGCTCACACTGAAAACCTGACTGCACTGGATTCTTCAGGTAAGGTTGCCATTAAAGCACAGATATGGATGGAGTTCTGGAGGCCGCTGTCGCTCTGTGTGGATGTAAAGTGGTGTGTAGTTTTCTCTGCCTGCCTGCTTTCAGTCGCTCCATCTCCTCCGTcagcctctgctgctgctgcctcttACTCTTCACAGATCTCTCCATCACTGtgttCATGTCCTATCTTTGGTGCGCTGCACCCAACCCACTGTCCTTCCACCCATCTTCAGACACCATCGCTCTACGCTTCTTGCTATTCCTCAGCAAAACCTATGAGGCGGTGTTCATCCTCACGCCAATTCTGGTGGCCGTGGAGGTGATACTCTGGCTTCTGTGGCATCAGGAGGCAACAATGTCTGAGAACACCATTGGAGAGAttgtgaagaagaagaacaagcaCAGTGAGATGGATCCATTAGTGTTGCTTATGGATGCTGAGGAAAAAGCGTTGGAGATGGAACCAGTACAGCGCGAAAAGAGAATCACGCAAGAGAATCGAGGAATGTTCTTCACATTCTTGAAGGTTGTGAGCTTTTTTGGTTGTCTTCTACTGTGGTGTATAAGTGGAACCTATGCTGGATCCAGTTGGAAGCAGGATCAACCAATGGTCAAAGAGTGCCTGGAAAAGGGCGGGTCTTTGTCAGCCTGCCTCCCATGCTTGCTGACTGCCTCCTCGCCAATCGGTGCTCAACTTCTTTGGCTGCTAGCCGCCATATTGGTTGTTTTGGGGTTGATCCAAGGTCTGAAAGGTTTGCATTTTTCAAAGCCAGTCCAGTTCCTAAAGCTGATTTTCCACACAAATCAGCAGGAAATGTCTCAAAAGACAGTTTCTGTTTCTGGGTTGcatttacaaatgttttttaaatgggtTAAAGAGTATAAAGGTAGCGAAAGTAATAGAAATCAGCAAAAACAATGGAATTTCGTACTTGACTTGACAACAGAGCACAAGGACGGTGTTGACTCAGCTGCTCAGGGTCTGCAACTGGAATACAATGGGCCACCACTGGCCAATGGAAACCCAAGGCCATTATGTGGCCAAACAGGTTTGACTGGTGGTTGTAAATTACAAAGCGGAGACGTCCTGCCCGCCTCACAGCAACAGTCTGCAGCAGAACTTCCCCTTACGGGCACTGATGTACTGGGAAACACAGGACTGGCCCTGAGCCCCAACGAGACGAGACACTGGAAGCCTCAGTGGGAAAGTCCCTGCCTGAGTGGAGGTCTAATGACAGGACTAGTGTGTGGTttgctggtgtgtgtttttcctACAGTTCTCAGCACCAACATACTACTCGTCAGAAGCCTGGACATGctggtggtgtgtgttgtgaaaCATTTGCTAATTGCTAACCACAGTAAATAACTGTAAAGGGACTTGGCGGGATGTGCGTTCCCACAGGACTTATCAGCGTGTGAAAAGTGTTGAGATCATTGAAATGTGAGTGCTAAACTTTCACTGAGCAATCTCACACTGATGGTTAACTTTGGGAGACTGAGtagtccagtggtctaaagtgttgccactatgattgggagatcgctggttggaatcctggtcatgtagcttgccattagctgccggagccctgagagagtacaattggccttgctctctctggatgggtacagtagatggcgctctctttttcccctcatcactcctagggtgatgtcgatcagcacaaggcgcctgTCAGCTCAGAGTCGCGGCGCTTTCCTCCAAAAGAgccggagtctgacttcacgtgtgtcggaggaggcatgttttTTGGTATCAGTAGTAATAGGGGGGGATATACAGCAGACTAgcaactgaatgggtgggacacttggcctagctaaatttggagaaaatggggaaaaaaaaataaataaaatacgtTGGTTAACTTCATTAATGCATTTGTGttcatcatcatttttttctaagtttATTCCACTTTCTCCTTAATTTGGAAGCCCAATTACATAGGGTTGCCATCCTGTCCTGTTAAATAAAGAACCAATTtgttctataaaatatatatatttttggaagtGCGGGACTATttatctgtaaataaatgtcatGCTTTATGAAATAAGTACTGTTACTAAAAAACGTATAACATTTCTGAGTAAGAAACTCCATGATgtgctgtttttaaaacatatatgtgtataaaacaaatacacaagGAACAGATTTGCCAGGTACAGGTTATAGCAGCCCAATCCCAGCaaacaatttttggttagtagaacgttttctgaatgttacggTTTACGTTCTTAGGATGTTAAATCTGTTGagttttctgaatgttcttaaaatattatttaatgttttttaaacatgttggTAACATCACTAATacatcaatgttttatttttagttttgagaATAATGCTAGTATTCGTGTGGCTGGGATTTTTCTGtgagaaacgttctaataaTAACGTTGGGATGTAAACCAATATTATGTCACATattttcagaatgttcctgAAACATTATTTGTGTAAAGTTACAGGCTAACTTTTGTGGAACCTTTTCAGAACGTtgctaaacatttttatgttttatgtctttaaagtaaattcttcaaaaaaatatttgaaagtcaagcgagtg
>XM_007251434.3
CTTTAGCTGCAAACATTAGCAATTAGGCTTTAGCAATACAGACAGCATGGCACTCTTCACCCTACCCTGCTGAGGAAGCAGCTCGACCAGTTTTAGTGTATGAtctacacaaacacagacacaccctTACCTCAGCCACGTGCTTCTCCACACAGCTCAGGTAAAGCAACCTACAGAGAGGCAGGGGCTGCCTGTAGAGACACGTCCCACACAGGGAGGGCTCGGggaatccacacacacacacacacacatgaggaTGAGCCCTTTCTGCTCACACTGAAAACCTGACTGCACTGGATTCTTCAGGTTGCCATTAAAGCACAGATATGGATGGAGTTCTGGAGGCCGCTGTCGCTCTGTGTGGATGTAAAGTGGTGTGTAGTTTTCTCTGCCTGCCTGCTTTCAGTCGCTCCATCTCCTCCGTcagcctctgctgctgctgcctcttACTCTTCACAGATCTCTCCATCACTGtgttCATGTCCTATCTTTGGTGCGCTGCACCCAACCCACTGTCCTTCCACCCATCTTCAGACACCATCGCTCTACGCTTCTTGCTATTCCTCAGCAAAACCTATGAGGCGGTGTTCATCCTCACGCCAATTCTGGTGGCCGTGGAGGTGATACTCTGGCTTCTGTGGCATCAGGAGGCAACAATGTCTGAGAACACCATTGGAGAGAttgtgaagaagaagaacaagcaCAGTGAGATGGATCCATTAGTGTTGCTTATGGATGCTGAGGAAAAAGCGTTGGAGATGGAACCAGTACAGCGCGAAAAGAGAATCACGCAAGAGAATCGAGGAATGTTCTTCACATTCTTGAAGGTTGTGAGCTTTTTTGGTTGTCTTCTACTGTGGTGTATAAGTGGAACCTATGCTGGATCCAGTTGGAAGCAGGATCAACCAATGGTCAAAGAGTGCCTGGAAAAGGGCGGGTCTTTGTCAGCCTGCCTCCCATGCTTGCTGACTGCCTCCTCGCCAATCGGTGCTCAACTTCTTTGGCTGCTAGCCGCCATATTGGTTGTTTTGGGGTTGATCCAAGGTCTGAAAGGTTTGCATTTTTCAAAGCCAGTCCAGTTCCTAAAGCTGATTTTCCACACAAATCAGCAGGAAATGTCTCAAAAGACAGTTTCTGTTTCTGGGTTGcatttacaaatgttttttaaatgggtTAAAGAGTATAAAGGTAGCGAAAGTAATAGAAATCAGCAAAAACAATGGAATTTCGTACTTGACTTGACAACAGAGCACAAGGACGGTGTTGACTCAGCTGCTCAGGGTCTGCAACTGGAATACAATGGGCCACCACTGGCCAATGGAAACCCAAGGCCATTATGTGGCCAAACAGGTTTGACTGGTGGTTGTAAATTACAAAGCGGAGACGTCCTGCCCGCCTCACAGCAACAGTCTGCAGCAGAACTTCCCCTTACGGGCACTGATGTACTGGGAAACACAGGACTGGCCCTGAGCCCCAACGAGACGAGACACTGGAAGCCTCAGTGGGAAAGTCCCTGCCTGAGTGGAGGTCTAATGACAGGACTAGTGTGTGGTttgctggtgtgtgtttttcctACAGTTCTCAGCACCAACATACTACTCGTCAGAAGCCTGGACATGctggtggtgtgtgttgtgaaaCATTTGCTAATTGCTAACCACAGTAAATAACTGTAAAGGGACTTGGCGGGATGTGCGTTCCCACAGGACTTATCAGCGTGTGAAAAGTGTTGAGATCATTGAAATGTGAGTGCTAAACTTTCACTGAGCAATCTCACACTGATGGTTAACTTTGGGAGACTGAGtagtccagtggtctaaagtgttgccactatgattgggagatcgctggttggaatcctggtcatgtagcttgccattagctgccggagccctgagagagtacaattggccttgctctctctggatgggtacagtagatggcgctctctttttcccctcatcactcctagggtgatgtcgatcagcacaaggcgcctgTCAGCTCAGAGTCGCGGCGCTTTCCTCCAAAAGAgccggagtctgacttcacgtgtgtcggaggaggcatgttttTTGGTATCAGTAGTAATAGGGGGGGATATACAGCAGACTAgcaactgaatgggtgggacacttggcctagctaaatttggagaaaatggggaaaaaaaaataaataaaatacgtTGGTTAACTTCATTAATGCATTTGTGttcatcatcatttttttctaagtttATTCCACTTTCTCCTTAATTTGGAAGCCCAATTACATAGGGTTGCCATCCTGTCCTGTTAAATAAAGAACCAATTtgttctataaaatatatatatttttggaagtGCGGGACTATttatctgtaaataaatgtcatGCTTTATGAAATAAGTACTGTTACTAAAAAACGTATAACATTTCTGAGTAAGAAACTCCATGATgtgctgtttttaaaacatatatgtgtataaaacaaatacacaagGAACAGATTTGCCAGGTACAGGTTATAGCAGCCCAATCCCAGCaaacaatttttggttagtagaacgttttctgaatgttacggTTTACGTTCTTAGGATGTTAAATCTGTTGagttttctgaatgttcttaaaatattatttaatgttttttaaacatgttggTAACATCACTAATacatcaatgttttatttttagttttgagaATAATGCTAGTATTCGTGTGGCTGGGATTTTTCTGtgagaaacgttctaataaTAACGTTGGGATGTAAACCAATATTATGTCACATattttcagaatgttcctgAAACATTATTTGTGTAAAGTTACAGGCTAACTTTTGTGGAACCTTTTCAGAACGTtgctaaacatttttatgttttatgtctttaaagtaaattcttcaaaaaaatatttgaaagtcaagcgagtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251433.3 True 3002 mRNA 0.44 3 4810684 4824075
XM_007251434.3 False 2923 mRNA 0.44 3 4810683 4824000

Neighbor

gene id symbol gene type direction distance location
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding downstream 198953 4584260 ~ 4611730 (-)
slc45a1 slc45a1,LOC107654425 coding downstream 250884 4538302 ~ 4559799 (-)
errfi1 LOC108413607 coding downstream 426445 4374402 ~ 4384238 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding downstream 507228 4228840 ~ 4303455 (-)
park7 park7,LOC107657982,LOC107701995 coding downstream 638856 4162390 ~ 4171827 (-)
LOC103024243 NA coding upstream 19157 4843232 ~ 4857309 (-)
LOC103024768 LOC108441423 coding upstream 75940 4900015 ~ 4934604 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding upstream 122497 4946572 ~ 4972846 (-)
LOC103022065 NA coding upstream 170922 4994997 ~ 5466875 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 922815 5746890 ~ 5763512 (-)
G187375 NA non-coding downstream 8782 4801108 ~ 4801901 (-)
G187365 NA non-coding downstream 92015 4715615 ~ 4718668 (-)
G187353 NA non-coding downstream 178218 4627926 ~ 4632465 (-)
G187340 NA non-coding downstream 234044 4574032 ~ 4576639 (-)
G187339 fam213b,LOC107702003,LOC107582414,LOC107712975 non-coding downstream 244834 4560308 ~ 4565849 (-)
G187431 NA non-coding upstream 44850 4868925 ~ 4869788 (-)
G187432 NA non-coding upstream 45816 4869891 ~ 4870820 (-)
G187545 NA non-coding upstream 667306 5491381 ~ 5492666 (-)
LOC111195361 NA non-coding upstream 676920 5500995 ~ 5501769 (-)
G187548 NA non-coding upstream 684210 5508285 ~ 5509731 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 649729 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 1030963 3778014 ~ 3779720 (-)
G187154 NA other downstream 1035840 3765863 ~ 3774843 (-)
G187156 NA other downstream 1055006 3749815 ~ 3755677 (-)
G186673 NA other downstream 3420196 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 150153 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 669337 5493412 ~ 5505747 (-)
svbp svbp other upstream 694718 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2153576 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2364541 7188616 ~ 7193252 (-)

Expression


Co-expression Network