LOC107196799 (LOC108431625,LOC107706545)


Basic Information

Item Value
gene id LOC107196799
gene name LOC108431625,LOC107706545
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3908371 ~ 3916776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251459.3
TGAGTACAGCTCAGGTGAGTCGCTGCTATGCTGTTTACAGTGAGAGCAGGACTGATCCCAGCTCAGCTCAGACGGTTTATCAGCATGTCCTCCTCTCAGACAGCCCGGTCCAAACCCCCAGCGACCCTGCTGGGGGGCAACTCGTTCGGGGGTCGCGCTGATGCGGAGCTGAGCGGACAGATGGTCCAGGTGTTTCTGAAGAGAGGACACCAGGAGCTGGACACTGCCTTCATGTACTCAGGAGGACAGTCAGAGACAGTGATAGGGGACATGCAGCTTCCTGAGACAGTTAGAATTTCCACCAAAGCAAACCCTTGGGATGGCAAGACCCTAAAACCAGAGAGTGTTCGCTCTCAGCTGGAGACCTCCCTAAAGAAGCTGCGCACCCAGAGCGTGCACATCTTCTACCTGCACGCCCCGGACCACCAGACCCCCATTCAGGACACACTGCAGGCCTGCAACGAGCTCTACAAAGAGGGAAAGTTCAAGGAGCTGGGATTATCTAACTATGCCTCCTGGGAAGTGTCTGAAATCTACTGCATCTGCAAACACAACAACTGGGTGCTCCCTACAGTCTACCAGGGAATGTACAACGCCACCACGCGGCAAGTACAGACAGAGCTGCTCCCATGCCTGAGATACTTTGGTATCCGTTTCAATGCGTACAATCCTCTCGCAGGAGGTCTACTCACTGGGAAGCATCATTATGAGGAGAAAGATGGAAGCCAGCCAGCCGGACGCTTCTTTCAAAGTCATTCTTCTGCTGTTTACCTAGACAGGTACTGGAAGGAGAGCCATTTCTCAGCCATAGATGTGATTATGAAGGCTCTTGAAGCAGCATACGGTTCACAGAAGCCCACCATAGCATCAGCCGCCATACGCTGGATTTATCATCACTCTCAGCTGAAGGGGGATCTTGGAGATGGTGTCATCATTGGGATGTCCAACATGAAGCAGCTTCAAGAGAACTTAACAGCAACTGAAGAAGGTCCTTTAAAGCAGGAAGTTGTAGATGCCTTCAAGCAGGGCTGGAATCTGGTGGCCTATGAGTGTCCCAACTACTTCCGTTAGATTTTGACCATATTTAAGGAGAACGTCTTTAATCTTGTAACTTTTATATAACTGTATTGTTCAagataaaaatgcaataaacaaaattatttttcatttaagaGCATTTAATAACATGCAGTTACAAACGTTTGAAGTGTAATGAAATTGTAGATAAACACTGAGATAATGAAAttgtaacatatatatttaatattctaaataaaaaactgtttttaagattga

Function

NR:

description
PREDICTED: aflatoxin B1 aldehyde reductase member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251459.3 True 1296 mRNA 0.47 7 3908371 3916776

Neighbor

gene id symbol gene type direction distance location
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding downstream 1093 3902392 ~ 3907278 (-)
LOC111195357 LOC107706545 coding downstream 6340 3892521 ~ 3902031 (-)
LOC103032581 iffo2,LOC108254735 coding downstream 31058 3830928 ~ 3877313 (-)
aldh4a1 aldh4a1,LOC106582961 coding downstream 86483 3809289 ~ 3821888 (-)
LOC103033529 LOC108431592,LOC108431591 coding downstream 112075 3795152 ~ 3796296 (-)
park7 park7,LOC107657982,LOC107701995 coding upstream 245614 4162390 ~ 4171827 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding upstream 312064 4228840 ~ 4303455 (-)
errfi1 LOC108413607 coding upstream 457626 4374402 ~ 4384238 (-)
slc45a1 slc45a1,LOC107654425 coding upstream 621526 4538302 ~ 4559799 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 667484 4584260 ~ 4611730 (-)
G187168 NA non-coding downstream 21323 3884904 ~ 3887048 (-)
G187167 NA non-coding downstream 25256 3882857 ~ 3883115 (-)
G187166 NA non-coding downstream 25738 3879889 ~ 3882633 (-)
G187155 NA non-coding downstream 124030 3757369 ~ 3784341 (-)
G187152 NA non-coding downstream 172438 3732364 ~ 3735933 (-)
G187172 NA non-coding upstream 25720 3942496 ~ 4028558 (-)
G187177 NA non-coding upstream 75196 3991972 ~ 4031442 (-)
G187198 NA non-coding upstream 283008 4199784 ~ 4200025 (-)
G187247 NA non-coding upstream 402629 4319405 ~ 4319687 (-)
G187248 mrps16,LOC107712960 non-coding upstream 403004 4319780 ~ 4323811 (-)
LOC107197677 NA other downstream 128651 3778014 ~ 3779720 (-)
G187154 NA other downstream 133528 3765863 ~ 3774843 (-)
G187156 NA other downstream 152694 3749815 ~ 3755677 (-)
G186673 NA other downstream 2517884 1389924 ~ 1390487 (-)
LOC103045965 NA other downstream 3367582 539042 ~ 540789 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other upstream 54158 3970934 ~ 4160954 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 1057452 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1576636 5493412 ~ 5505747 (-)
svbp svbp other upstream 1602017 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 3060875 6977651 ~ 6982840 (-)

Expression


Co-expression Network