ccdc51 (ccdc51)


Basic Information

Item Value
gene id ccdc51
gene name ccdc51
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 582798 ~ 585804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251499.3
CCTGAAGAaaatgttagcttagcatgaCTTTCATACAGATAACTAACTAACTGCTCAAAGCTAACTcacctctgtctgtctgatattaTTAGTTCATAACAGGCtggttttgtatttaaaatgctCAGGGTTTCGCTTGAAGGCAGACAGGACTAACTAACAGAGACGGTATCTGGTTGCCAGATTAAGGTGTGTTTCCTGCCCAAATGAAAGCAAGTCAATGAGGTACAGAGCAAGCTGTGTCCTACCAAGGAGCTATGGAACTTGCTTCTACCTTCTCAAAGTCCCTGGCAGAGTCCAGTGGAACATCTCCATCAACAGAACCTACTGTTCCCCGAAGCAGAACCCAGAGGACAAGGCTGATAAGGCCGTGTCGTCTCAGGACCGTGCCTCGGCCGCCCTGAAGAATGTGGCAAAGCTTGGGAAACAGTGGGGACAGAATTCTGTGAGGACCATGAGCACTACCGTCAATTACTGGTGGGCGAAGTACGAGGAGTTTGTGGGTCTCAATGAAGTTCGAGATGCTCAGAGCAAAGTTACAGAGGCAGAGAAGGCGTTCATGGTAGCCAGAGGAATGGTCCGCGAGGCTCACGTCAGTTTGGAGGCTCTTCAAGTTAGATTGAAGGAAGTCAGAGATCGCCTGGACCGTGTATCACGAGAGGAGGCACATTATCTAGAACTGGCAACACTGGAACACAAGCTACTGCAGGAAGAGCGTCGTCTGAAAACAACCTACGAGAATGCGGAGGAGTGCGAACGAGAGAAATTTGCGCTCTTCTCGGCTGGCGTGCGAGAGAGCCACGAGAAGGAGCGATCTCGGGCTGAGCGAACCAAGAACTGGTCCGTAATTGGTTCGGTGCTGGGTGCCATCATTGGGGTAATGGGGTCCACTTACGTAAACCGGGTACGCCTTCAAGAACTGAAAGGCCTGCTGCTAGAAGCTCAGAAGGGGCCGGCGAGTCTACAGGAAGCTATCAAGATCCAAGCCAGTTTACACAAGAACCAGCAGGAGGAACTCCGTGGCCTCATAGATACGTTTAGGGCAGCTGTGAAAGGTGGAGGAGTCGAGGCACAAAAAGTCAAGCCAAGGTCCATCTTAGTGCCAGCAGCAGTGCCCGTTTCAACCCCTCCGTCTACACACGGTGCCTCAGAAGAAGCCGTGAAGGAGATCCTCCTCCACAGCCAGAAAGCTCAGGCTCTCATGGAAGATCTCAAGCCCCAGCTGCATCAGCTGGAGCAGAGCGTGGGGAAGGTGGCGACAGAGCTTCACGCCGTGAGGAAATCTGTGTTGAATCGTCCTGTTGAGAAGCCAGTCATTCAGACTAAAGATACGCAGCTGCTGGTGTGTGATACAGAGAGCATCATCCAGGGACTGGACCAGACGGAGAAGAGACTGGAGGCTCAGATCAATAAGACTACTCTGTACACCACAGTTCTGACCTACACTGCTTTTGCTTTAACTATGCCAGTGCTGTACGTCATCTTTAAAGCTTCATAATAGGGTACAGGGTACTGGATACTAGTGTAGGTAGATCGTGTGCAGTTAAGGGGCCAATGACCGACAAGAATAACCTCAGATTTTATAGGAGACCATTGGAATTATATCATGGCTTAATGCACTGATGGATAAACACTgattaaaatgttctaaatgat
>XM_007251500.3
TCATACAGATAACTAACTAACTGCTCAAAGCTAACTcacctctgtctgtctgatattaTTAGTTCATAACAGGCtggttttgtatttaaaatgctCAGGGTTTCGCTTGAAGGCAGACAGGACTAACTAACAGAGACGGTATCTGGTAGGTTGCCAGATTAAGGTGTGTTTCCTGCCCAAATGAAAGCAAGTCAATGAGGTACAGAGCAAGCTGTGTCCTACCAAGGAGCTATGGAACTTGCTTCTACCTTCTCAAAGTCCCTGGCAGAGTCCAGTGGAACATCTCCATCAACAGAACCTACTGTTCCCCGAAGCAGAACCCAGAGGACAAGGCTGATAAGGCCGTGTCGTCTCAGGACCGTGCCTCGGCCGCCCTGAAGAATGTGGCAAAGCTTGGGAAACAGTGGGGACAGAATTCTGTGAGGACCATGAGCACTACCGTCAATTACTGGTGGGCGAAGTACGAGGAGTTTGTGGGTCTCAATGAAGTTCGAGATGCTCAGAGCAAAGTTACAGAGGCAGAGAAGGCGTTCATGGTAGCCAGAGGAATGGTCCGCGAGGCTCACGTCAGTTTGGAGGCTCTTCAAGTTAGATTGAAGGAAGTCAGAGATCGCCTGGACCGTGTATCACGAGAGGAGGCACATTATCTAGAACTGGCAACACTGGAACACAAGCTACTGCAGGAAGAGCGTCGTCTGAAAACAACCTACGAGAATGCGGAGGAGTGCGAACGAGAGAAATTTGCGCTCTTCTCGGCTGGCGTGCGAGAGAGCCACGAGAAGGAGCGATCTCGGGCTGAGCGAACCAAGAACTGGTCCGTAATTGGTTCGGTGCTGGGTGCCATCATTGGGGTAATGGGGTCCACTTACGTAAACCGGGTACGCCTTCAAGAACTGAAAGGCCTGCTGCTAGAAGCTCAGAAGGGGCCGGCGAGTCTACAGGAAGCTATCAAGATCCAAGCCAGTTTACACAAGAACCAGCAGGAGGAACTCCGTGGCCTCATAGATACGTTTAGGGCAGCTGTGAAAGGTGGAGGAGTCGAGGCACAAAAAGTCAAGCCAAGGTCCATCTTAGTGCCAGCAGCAGTGCCCGTTTCAACCCCTCCGTCTACACACGGTGCCTCAGAAGAAGCCGTGAAGGAGATCCTCCTCCACAGCCAGAAAGCTCAGGCTCTCATGGAAGATCTCAAGCCCCAGCTGCATCAGCTGGAGCAGAGCGTGGGGAAGGTGGCGACAGAGCTTCACGCCGTGAGGAAATCTGTGTTGAATCGTCCTGTTGAGAAGCCAGTCATTCAGACTAAAGATACGCAGCTGCTGGTGTGTGATACAGAGAGCATCATCCAGGGACTGGACCAGACGGAGAAGAGACTGGAGGCTCAGATCAATAAGACTACTCTGTACACCACAGTTCTGACCTACACTGCTTTTGCTTTAACTATGCCAGTGCTGTACGTCATCTTTAAAGCTTCATAATAGGGTACAGGGTACTGGATACTAGTGTAGGTAGATCGTGTGCAGTTAAGGGGCCAATGACCGACAAGAATAACCTCAGATTTTATAGGAGACCATTGGAATTATATCATGGCTTAATGCACTGATGGATAAACACTgattaaaatgttctaaatgat

Function

symbol description
ccdc51 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC51 (coiled-coil domain containing 51).

NR:

description
LOW QUALITY PROTEIN: coiled-coil domain-containing protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251499.3 True 1656 mRNA 0.50 4 582798 585804
XM_007251500.3 False 1630 mRNA 0.50 4 582828 585804

Neighbor

gene id symbol gene type direction distance location
LOC103029902 NA coding upstream 4896 569183 ~ 577902 (+)
bcdin3d NA coding upstream 39268 541330 ~ 543530 (+)
gpd1 gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423,LOC100136539 coding upstream 77758 495073 ~ 505040 (+)
smarcd1 smarcd1 coding upstream 90034 475395 ~ 492764 (+)
LOC111195351 LOC108439503 coding upstream 110754 470063 ~ 472044 (+)
mcm2 mcm2,LOC107718478 coding downstream 1418 587222 ~ 601007 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding downstream 57981 643785 ~ 647255 (+)
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding downstream 142741 728545 ~ 767457 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding downstream 406130 991934 ~ 1005603 (+)
LOC103042257 LOC108436685 coding downstream 427600 1013404 ~ 1026063 (+)
G186401 NA non-coding upstream 19259 558952 ~ 563539 (+)
G186402 NA non-coding upstream 21286 559399 ~ 561512 (+)
G186385 NA non-coding upstream 84390 495704 ~ 498408 (+)
G186375 NA non-coding upstream 158987 422903 ~ 423811 (+)
G186368 NA non-coding upstream 241980 313960 ~ 340818 (+)
G186409 NA non-coding downstream 29514 615318 ~ 626377 (+)
G186410 NA non-coding downstream 40908 626712 ~ 628123 (+)
G186416 NA non-coding downstream 75765 661569 ~ 662228 (+)
G186436 NA non-coding downstream 314137 899941 ~ 905045 (+)
G186440 NA non-coding downstream 353571 939375 ~ 976150 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 44582 510575 ~ 538216 (+)
G186231 NA other upstream 467711 107396 ~ 115087 (+)
podxl2 NA other downstream 21029 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2394693 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2806583 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5194087 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6491361 7077165 ~ 7098672 (+)

Expression


Co-expression Network