G72644


Basic Information

Item Value
gene id G72644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6217613 ~ 6218979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82857
ATTGATTGTTGAGTGGGATGCAGACTTGATTCAAAGGACAAATGTCCTGCTATCATTGTCACCATGTAAAATCAGGAGTAGTAATATTAGATAATATCAGTGTTTTGATAAAATGTGACTGGTAATTTCTTGATCAGTGTAAAGAGCAGTTATTTGTCTTCTGCTCATCGCTATTATGTCTGCCACTAAATGTTCTACAGGGAATAGAATTATGTTTCTGCATTCTTGCCGCTTTGACACCTTAATAAAAAATAAGAGGGGGAAAACAACAATGCTGGTACTTACAACCCAAAGCAGACAAAATATAATGCTTGAAATATCTTGTCTTTACAAATATGTGATATAATATTAGTTGACAACATCCCATTTAGTAGCGTGAAGAAGGGTTTGTTGGGTGACAGCTAATTATGCTGCTAATTAGCCATGAACACAACACTTATGGTGGAAATGATGACAATATCCCAAAACGTCACATTGTGTGATGGTGATGCTGTGAATATGTAACCTGTTATTTCAGCTGAATTAATCATAACATATGTGTTAGTTTCTTAGTGCACTTTACAAAACCGGCATAAAAAAGACTTACTGGTGAACTGTTAATCAAATAAGCCATGTTTCATAGAACCCAGAGACGTTTTATTGTAAGATAAATATTTAGGATGTTCATTCTGCTGATTATAATACAACATGAAGCAGTTCACTGTACATTTGATTCTAGTGACCTCAGGCTATGTTAATCTTCCGAGAATGGAAACGGTTTGGGACAGTCTTGTTTTCATTTTCGTAACATTAAATAGTACAACATCTACCCCCTGACAGCAACAAAGTGTTGGCTAAGGTCTACTGCAGACTTTGAAATGAAAAGTGTTTATTCCAGTGCAAACTCTACATATGTTTAAGCTCAAAACATTTTATAGTTTATATTCCTCACTATGACTGATGCAAAGAATGGAGGGATGTTTCTAAATCTAAATGATGTGATTATTCTAAACAATCTGTGCTTGATGATGCTGATTAAAAAGTAGTTATGGTGACTTTGGTGTTAGGTATTTGATTGCCTTGAATCGTGATGTGGAGAAATGCTGGAGTTAGACTGTTATCATGAGAATTTTGTTCACTATTGCTACAATATACATGTGCAAGCGTTCACTAACATGGCATAGTCATTGTAAAC
>TU82858
ATTGATTGTTGAGTGGGATGCAGACTTGATTCAAAGGACAAATGTCCTGCTATCATTGTCACCATGTAAAATCAGGAGTAGTAATATTAGATAATATCAGTGTTTTGATAAAATGTGACTGGTAATTTCTTGATCAGTGTAAAGAGCAGTTATTTGTCTTCTGCTCATCGCTATTATGTCTGCCACTAAATGTTCTACAGGGAATAGAATTATGTTTCTGCATTCTTGCCGCTTTGACACCTTAATAAAAAATAAGAGGGGGAAAACAACAATGCTGGTACTTACAACCCAAAGCAGACAAAATATAATGCTTGAAATATCTTGTCTTTACAAATATGTGATATAATATTAGTTGACAACATCCCATTTAGTAGCGTGAAGAAGGGTTTGTTGGGTGACAGCTAATTATGCTGCTAATTAGCCATGAACACAACACTTATGGTGGAAATGATGACAATATCCCAAAACGTCACATTGTGTGATGGTGATGCTGTGAATATGTAACCTGTTATTTCAGCTGAATTAATCATAACATATGTGTTAGTTTCTTAGTGCACTTTACAAAACCGGCATAAAAAAGACTTACTGGTGAACTGTTAATCAAATAAGCCATGTTTCATAGAACCCAGAGACGTTTTATTGTAAGATAAATATTTAGGATGTTCATTCTGCTGATTATAATACAACATGAAGCAGTTCACTGTACATTTGATTCTAGTGACCTCAGGCTATGTTAATCTTCCGAGAATGGAAACGGTTTGGGACAGTCTTGTTTTCATTTTCGTAACATTAAATAGTACAACATCTACCCCCTGACAGCAACAAAGTGTTGGGGTTGACTAAGGTCTACTGCAGACTTTGAAATGAAAAGTGTTTATTCCAGTGCAAACTCTACATATGTTTAAGCTCAAAACATTTTATAGTTTATATTCCTCACTATGACTGATGCAAAGAATGGAGGGATGTTTCTAAATCTAAATGATGTGATTATTCTAAACAATCTGTGCTTGATGATGCTGATTAAAAAGTAGTTATGGTGACTTTGGTGTTAGGTATTTGATTGCCTTGAATCGTGATGTGGAGAAATGCTGGAGTTAGACTGTTATCATGAGAATTTTGTTCACTATTGCTACAATATACATGTGCAAGCGTTCACTAACATGGCATAGTCATTGTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU82857 False 1174 lncRNA 0.35 3 6217613 6218979
TU82858 True 1180 lncRNA 0.35 3 6217613 6218979

Neighbor

gene id symbol gene type direction distance location
CI01000012_06147833_06153076 NA coding downstream 63410 6147695 ~ 6154203 (-)
CI01000012_05988471_06021245 JAG1B, JAG1 coding downstream 196084 5986816 ~ 6021529 (-)
CI01000012_05932523_05940218 MKKS coding downstream 277395 5932489 ~ 5940218 (-)
CI01000012_05897865_05906600 NA coding downstream 311013 5897734 ~ 5906600 (-)
CI01000012_05889930_05893764 NA coding downstream 323849 5889930 ~ 5893764 (-)
CI01000012_06406744_06433128 TASP1 coding upstream 187765 6406744 ~ 6433128 (-)
CI01000012_06496870_06580459 NA coding upstream 277164 6496143 ~ 6580919 (-)
CI01000012_06597401_06599198 NA coding upstream 378309 6597288 ~ 6600700 (-)
CI01000012_06694889_06695185 NA coding upstream 475808 6694787 ~ 6695223 (-)
CI01000012_06713565_06749032 NA coding upstream 494477 6713456 ~ 6749070 (-)
G72662 NA non-coding downstream 39955 6177310 ~ 6177658 (-)
G72636 NA non-coding downstream 60495 6156883 ~ 6157118 (-)
G72626 NA non-coding downstream 73338 6144075 ~ 6144275 (-)
G72623 NA non-coding downstream 76978 6140380 ~ 6140635 (-)
G72406 NA non-coding downstream 300180 5915636 ~ 5917433 (-)
G72675 NA non-coding upstream 46943 6265922 ~ 6266386 (-)
G72676 NA non-coding upstream 47585 6266564 ~ 6266771 (-)
G72687 NA non-coding upstream 67382 6286361 ~ 6286785 (-)
G72699 NA non-coding upstream 78221 6297200 ~ 6297507 (-)
G72707 NA non-coding upstream 84762 6303741 ~ 6304063 (-)
G72629 NA other downstream 70119 6147011 ~ 6147494 (-)
G72294 NA other downstream 751756 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 800833 5413369 ~ 5416780 (-)
G72204 NA other downstream 915407 5293773 ~ 5302206 (-)
G72068 NA other downstream 1437481 4776220 ~ 4780132 (-)
CI01000012_07356934_07358497 NA other upstream 1136273 7356863 ~ 7358612 (-)
G74648 NA other upstream 2045350 8264329 ~ 8265654 (-)
G74701 NA other upstream 2148040 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 2848927 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 2852392 9071371 ~ 9073457 (-)

Expression


Co-expression Network