bhlhe40 (bhlhe40)



Basic Information


Item Value
gene id bhlhe40
gene name bhlhe40
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 20816597 ~ 20821524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007254553.3
TTTATTTAACACGTAGCTAGTCCAGTTCACCCTCCCACACACATATAGCTCTagatacaacacacacactcctccttcatacacactctcacacaaacatTTAACAGGAGAGGAGCTTCAAAACTGTCTGAGTTGACGACAAACCACCTTTACGCAAGGACGTTATGCACTTTCCCTGCGGATTTCTTTGAGAACAAGTTCGTTTTTGGCAATTTATgagcatttaaaagctgtttcgGCTTCATTTTCGTTAGAAATCGTTTTTTCCTGCGTTATTTTACGCGTAAACGAGACGAAATGGAAAGGATTACAAGCGCACAGCCTCCACCGTGTATGACCAAACACCCCTCTATGGATATTTCAGATATGCCGGGAATGGATTTCCCAATGTATGTGTACAAACCTCGGAGAGGCATGAAACGAGGAGACGACAGCAAgGATACGTACAAGCTGCCACATCGCTTGATTGAAAAGAAGAGACGTGACAGAATAAACGAGTGCATCGCTCAGCTGAAGGATTTGCTCCCTGAACACCTTAAACTCACTACGCTGGGCCATTTGGAGAAGGCCGTGGTGCTGGAGCTCACGTTAAAGCATGTGAAAGCCCTCAACGGCCTTctggaacagcagcagcagcagatcattTCATTGCAGAGCGGAATGCAAATTGGTGATCAGAGCAATGGCAGCTCAGAAAACAGCGAAGAGATGTTCCGTTCCGGTTTCCATCTCTGTGCCAAGGAGGTACTCCAGTATCTGGCCAGCTTGGAAAGCACACGGGACCTGACCCCAACACACGTTGTCAACCACCTGCACAAAGTGGCTGCTGAGCTCCTGCAGCGTCCAGCCAGCCCCCGCCTGGACACGCCCTCGCCTGGTCGCAAGGGTCAAGAGGCCAGGGAGAAGGCAGCTGCTCCCCAGCCCTGCTCGCCGGAGGGCCACGCCAAAAACTGTGTCCCGGTCATTCAGAGAACGTACAACCCCCAGATCAGCGAACAAAGCGGCAgcgacacagacacagacagcgGCTACGGGGGCGAGCTGGACAAACGAGACTCCAAAGGCCAGAGAATCAGCTACTACAGCAAAGACGCCGCAGAGATGAAGCACGGCCGGTACGGCAGCATCAAGGAGGAGCGAGACGAGCCCCAGGCCAAGCGGGTCAGGTCGGATTCGTCCGAGGACGAGTCTCTGTCGGGTCACGAGTCGCACGGCGGGTACGTGAGCTTCTCGCCCCACCAGCCGCCGCTCTGCATGCCCTTCTACCTCATCCCTCATAGCTCAAGCGGCAGCGCTGCCGCCTACCTGCCCATGCTGGAGAAGTGCTGGTACCCAGGGGGCATGCCTGTGCTGTACCCGGGCATCGGGGGCTCCACGGCTGGGCTGTCTCCTGAAAAACTGCCCTCGTCACTGGTCATGTCTCCGAGAGTAGCCTCCCCGGCTGCCCCTCAGACCCCTATGGACTCTCCTGCTCTCCTTCAGGCCCTGAAACAGGTGCCCCCCTTAAACCTGGAAACCAAAGACTGAACTAactaactataaataaataaataaataaaaaacaccccCAGCCCACCCTCTGAACGAATGGTCTTGGAATGGTGTTGAAAGAGGATGGAGGGGTTAACactgtaagagctgtaagagggGGAACAactataataatgatgatgatgaacatCTGCTCGGTCTTCATCTCCATCGCCGCTGCCCACCAGCCTCCCCCCACccctccaaaaaaaacaaacaaaaaaaaaaactcgcaCCTACACCACCACCCACCCTCAGATGGCTACTCAGATCAGACTGCTACTTATAAAacatgcgcgcacacacacaaagatacgCAACAGATACGTGGCCACAACatccctctcttcctccctccatTTCTACCTTCCTCTCGCTTCCTCTCTGTACTCCTCCGGCACACGAGAGTCCACgtggagacagacagacagacagatgaatggatggacagGTGCGAGCACACACAAGAGCGAGAGGAGCACCACGAGTAGAGAAGgaagcccagagagagagcgccGTTTCGTTTCGAGTCactgtgaagaagaagaaggaggaggatgaaCGAAAAAAGATAAAGTAAAAAAGGACACTGAATTGTCCGGTTCGAGGAAGGACCGCACCGAATGGgaggctctgctccctctgcaCTTCTGCTGAATGTTTGAATAAAagttcaaaaaagaaaaaaaaaaaatctgattaataaacaacaacaaaaaacccaAATCCAGAATGTGACGTGTTGCAGACAGTCCCCTAAAACCGACAAACTCTGGTGATAAGCCTTTGCACACATCTTTCTGTTTTGAATGTAAAcaaatgtctttcttttttttttaagaaaaaaaaaggtaactaGACAAACCCCTgtagatgctgctgctgctgtgttttgtgttggaTGTTTTATCTGTGCTgcagagaacgagagaaaacCGAGCGAGgctttgtttctatttttttctccacactgtCTCACGGACTCTGTGGCtgctttaataaaatgaaagacTTGTCCTCTTTTAGCCTAGAATGCTACCAAATAACGGTCTGCTGTAGATGACCAGAGCTATCATGAGAACACGACAACATTGGTAATAGCTacaaacagatagacagacagacctaCAGACTGCCCATCATCTCTCCTCATCTCTTGAGTTCCATCTCCAACTCGTCACCCCACAGACTGAAGAACGCTcgtgcaccccccccccccccctccttaaACGCTCATGCAGAACGCAGGTGGACCCCAGAACCCCGGGTCACTCGTGTAAATACGGGAGTAATGTAACCAtgactgctttttttttgttttgtatttctctcttgttttttttttttcttaacttttgTCCTCCAGcgcgagagtgagagtgagagatccTTCTTTTCAGTTtgtaattcattcattattGTTTGTGCAAGTAGGTGGGGTACTTGTGTGGTAACTACGCTGTGTAATTCATTTGTTTATACTACTTGTACATCTATATTTTTGATACATGACCCACAAATTTGTTGTGTGTTGTTCGCATTGAggggcaggaaaaaaaaaaaaacgaggggAGTTTCAGACTGGTTCACTCTgaatgagcgagagagagagagaatgaaagagtgagagagagagattgtgtacATAAGCACTGAGTGAAATTGAATCTGCGTCATTCTCTACGTTCACTTCTGGTCAGAATAAGACAGATCTTTTGTTCATGCTGTTGCCTTTACTTGTTTAAAGCAGTAAAACTGATGACAGATATCGAATTGTTTCATTCTGGATTCTGCAGAGAAGCGAGGAAAGTGAATGTAcaatgtttaaaacaatataactAGTTTTGTATAGGAAGAGGTACTTGGGATTTTTATTTTGGGACCTAACAGAAAGGTTGCtcgatgtatatatttttttgtcaagATTATTGTTGACATACATTAAAAAGCAAGAAAGTAttaataaagtctttttttttcctgtggaaACGCT

Function


symbol description
bhlhe40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

NR:

description
class E basic helix-loop-helix protein 40-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007254553.3 True 3523 mRNA 0.47 6 20816597 20821524

Neighbor


gene id symbol gene type direction distance location
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding downstream 9146 20795413 ~ 20807451 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding downstream 194103 20502308 ~ 20622494 (-)
traip traip coding downstream 562704 20243725 ~ 20253893 (-)
LOC103042725 LOC103042725 coding downstream 899136 19912875 ~ 19917461 (-)
LOC111195449 NA coding downstream 925489 19887079 ~ 19891108 (-)
itpr1 itpr1 coding upstream 15594 20837118 ~ 21072418 (-)
LOC103031955 NA coding upstream 272126 21093650 ~ 21097240 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding upstream 290956 21112480 ~ 21114923 (-)
LOC103026802 NA coding upstream 521178 21342702 ~ 21348384 (-)
LOC103027815 LOC108424594,LOC106566152 coding upstream 591165 21412689 ~ 21428618 (-)
G191557 NA non-coding downstream 290916 20493310 ~ 20525681 (-)
G191518 NA non-coding downstream 544674 20269621 ~ 20271923 (-)
G191507 NA non-coding downstream 573424 20181887 ~ 20243173 (-)
LOC111195458 NA non-coding downstream 663538 20148618 ~ 20153059 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding downstream 669974 20069689 ~ 20146623 (-)
G191647 NA non-coding upstream 135465 20956989 ~ 20957556 (-)
G191653 NA non-coding upstream 270296 21091820 ~ 21092235 (-)
G191664 NA non-coding upstream 283916 21105440 ~ 21106822 (-)
G191691 NA non-coding upstream 351948 21173472 ~ 21239522 (-)
G191787 NA non-coding upstream 457479 21279003 ~ 21279752 (-)
LOC103036492 card19,LOC108443695 other downstream 1288017 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1914312 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2017682 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 2501260 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 2640433 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 277823 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 608492 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 689400 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1025445 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 1527823 22349347 ~ 22362458 (-)

Expression



Co-expression Network