LOC103037097 (LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460)


Basic Information

Item Value
gene id LOC103037097
gene name LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19534667 ~ 19564176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254560.3
GTGAGTAGCGGGGCAGGGGCACCGGGGGAACCGGGCGGTGGGTAGTCATGTCCGCGGCGGAGCAGGGCTCATGGCTGCGGGGCGAGGTGGAGCGGCTGTCCCGGGAGCTGAGCGAGACGACCCGGGAGAAGATCCAGGCGGCGGAGTACGGGCTCGCCGTGCTGGAGGAGAAACAGCAGCTCAGCCAGAGATACGAGGAGCTGGAGGGGGAATATGAGACCCTCAGacaggagctggagcagctcaGAGAGGCTTATGGCCACGCCCACTCCGCCCAGAGGAAGGTTGCGGCGGACGGAGAGAGCCGGGAGGAGTCCCTGATCCTGGAGTCCGCATCTAAAGAGGCTTTCTACGAGCAGAGGGTTCAGGATCTGCAGGCCGACCTGCGACAGACCAGAACCACCCTGACCAGCACACAGGCTGAAAACGAGAGACTGGCCGCTCTCGCGCTCGAGCTGAGAGAGagTAATGAGCTGGTGGATCTGCAGCGAGCTCGGCTGCGGGATGATATCAGGGAGTTTAAGGTCAGAGAGTCTCGGCTGCTGCAGGACTACactgagctggaggaggagaacatcaCCCTGCAGAAACAGGTCTCTCTGCTCAGACAGGGACAGGTGGAGTTCGAGGGTCTGAAGCATGAGATCCGCCGGCTGGAGGAGGAGGCGCAGTACCTCAACAGCCAGCTGGAGGACGCCGTCCGGCTGCGGGAGATCGCCGAGCGGCAGCTGACCGAGGCTCTGGAGACGGTGAAGACCGAGCGCGAGCAGAAAGCGGCCCTGAGGAAAGAACTGACCAATCACATGACCCTCGGGGACTCGCTCCTCGCCAGCTCTCTGGACACGCTGAAGCTCGGTCTGGACGAGCCCAACAACGACGAGGCCGTCCGCACCTTCGAAAACGGCTTCGCCAAGATGGTGGACAGCGACGAGGACAACCGGTGCTCCACCCCCAAGAAGGGCGAGCGGTTCCGACCGGCGCCGAGTCTGGTGGACGATCTGCTGAGCGAACTGAACATCTCAGAGATCCAGAAACTCAAACAGCAGCTCGTCCAGGTTGAGAGGGAGAAGGTGGCTCTGCTCTCCACTCTGCAGGAGTCTCAGAAGCAGCTGGAGCAGGCCCGCGGCTCTCTGGCGGAGCAGCAGGAGGCGATGGCGAGGCTGAGTGATGATCTGGGGGCGATGAGGAGGTTCCACGCCGGTAAAGAGCGTCAGTCGGCTCTGGACAGCGAGCGGGAGCGGGACAGCCGAGAGGAAGGAGACGTGGACTATTACGAGCTGGACATCCACGGGCCGGAGATCCTGCGCTGTAAATACGAGGTGGCCGTAGCCGAGGCCGGAGAGCTGAGGGAGGAGCTGAAGGCGCTGAAGGCGGAGCACGAGGAGGTGAGGGCGGAGCATACGGAGGTGCAGGAGCGTCTGGAGAGTCAGGTGCGTGATCTGAGCTCTCAGGTGTCTGAGCTGGAGAGCGGGGGCCGGGTGGACCGGGAGAAGTTGGCGCGGCTGCAGAAGGAGCTCCAGGAGACCAGCGTTCTGGCGGGAGAATCTCAGGGAGCGCTCAGCGTGGCTCAGGATGAGCTGGTGGCCTTCAGCGAGGAGCTGGCCAACCTGTACCACCACGTCTGCATGTGCAACAACGAGACGCCCAGCCGCGTCATGCTCGACTTCTACAAAGAGGGGAAAGGAGCCGACGGCAAAGCGACCCGTCCATCATCTACACAAACACCCGCTGGCTCGGAACCGGCCCCGCCCCCCTCCGAATCCACACACAGCACCACGAACAGCGCCCCCGCTGGCCCGGCACGGGAAGACTCCAAAAAGGAGCCGATGGACGTTTATAACCTGGTGGCCATCATCCGGGACCAGATCCGGCACCTCCAGCAGGCGGTGGACCGCACCACCGAGCTGTCCAGGCAGAGGGTGGCCTCTCTGGAGCTGAACGCTGTGGCCGATAAAGACCAGACGGCCTGCATGGAGGAGATCCTGAAGCTCAAGTCCCTGCTGAGCACTAAACGAGAACAGATCGCCACGCTGAGGACCGTGCTCAAAGCCAACAAACAGACGGCGGAGGTGGCTCTGGCCAACCTGAAGAGTAAATATGAGAACGAGAAGACGATCGTCACAGAGACGATGATGAAGCTGAGGAACGAGCTGAAGGCTCTGAAAGAGGACGCAGCCACCTTCTCCTCCCTCCGAGCCATGTTCGCcaccagGTGTGACGAGTACGTGACTCAGCTGGACGACATGCAGAGGCAGCTGGCGGCGGCTGAGGACGAGAAGAAGACGCTGAACTCGCTGCTCCGGATGGCCATCCAGCAGAAGCTGGCTCTGACCCAGCGCCTGGAGGACCTGGAGTTCGACCACGAGCAGTCGCGCCGGGGCAGTAACCCCGCCCCCCGGGGCAAAGGACCCTTCTCTCGGGGCAAGGGGCCGGCCTCGTCGTCCAGCCCGCACGTAAGTCCCAGACTGCCCTGCAGAAGCCGCCTGCACTCCCAGGGCTTTGTGGGTAGCCCCGCGGTTAACTTTGTGGGCAGCCCGGTGGTTAGCCGCGTGGGCAGCCCTGCGTTTACCCGCGTGAGCAGCCCTGTGGTTAGCCGTGTTTGCAGCCCCCTGGGCAGCCGCGTGGGTAGCCCTGTGGGCAGCCCGGTGGTTAGTCGCTCGGGCAGCCCAGTGGTCTTCTGCAGTGAGAAGTATAAGATCCTGTGTGACATCTGAAGCTGATTAACCATCGATGACCTGACCTGCTGCATCCCTGCTTCATCACCCAGCCTGACTAACCATGTACATCTCATCCTGTACAACTGACTGACTAACCATCTGCTGTCTTCTAACTGGCTGCTTCACTGAGGCTTTTGGACTAATTGTCTTCTGTGTGAAGCTTCACAATCATCGCTAAGACCATCCACTAACCATCTAATCACATGATCATCAGCGCTTCATGTCTGTTGGTTTTGCATGTctgtttaaacacacaaacacacacacaccactaacactAACTCTGTTGTGCGTCAGTTTATGTATTTGTTATGTTTTTCAGGGTAGcttttttgtgaataatagtCCCATTAATCTCAATAAATCTGGTGACCCGGCAGACCAAgaaagtagggctgcacaatatatcgtttaagcatcgtcagcttttaaattaaacttgtcatgttgcaatattttgattcttgacaagaagtagatacacagctctgtctctgtgtctgtgtgagtgacaggctgctgctgcctgagaagaaGGAGGGGGGGTGGGAGCGTGAGGATTTGTTCAGGAGTAAACACCAGGTAACCTCACgaatggcctccatccacatggttgggcacgtgcttgtaaacttgagcacgtgttgaaagctgtgcacctcagtccagcacagttttgcggcGCAGATATTTctagttacagctgaattcacgcttttaatcccagaaaaacaaacactctaatttaccttttaaaaaaggCATGTAAATGCCTGAATAAAGGGcggattactgttgttttgctgttttttctcgGGTTTTAAGTGCTCGGCGCTGACTAAATTGGCAATAACCCAACAATACATGGGTTACAGTCACAGTTCAGTTTATTGTACTGTAATTGATACCGTAAACCATCAATCAGCACAAATTTGCTGGCTCCTTTTTGGGTTAAGGATTTTGGATTGCATGcaaagtttaatttatttactttttatgaaCAGATTTAACATTACTACAACTATAACCAATCATTAACCAGTAAACCTGGTTGTAGCATCTGAATGGTCAATTTTTTATACAGCAGCAGTGAAGATTCACACTGGATGAAGCATTAATGATGCTAGGGTATGCAgcattaaagaagaaaaaaaaaacttctgtataagttgtgtgaGTTTTGGGCTGTCCTGTGGTGACCCACATCCATCAGCTCCCAGCGTATACACActccagctgtgtgtgtgtgtgtgtggcgatTCCTCAGCATTTGTCTAAGTGCTAAGCTCTCAGCTGAGTGTCAGTGGGAATAAGTCGGCGTAATCCTGAGGTCAGACGTCCTTTGCAGAGCCTGATCCTGCTGTACCGTTTACAGCCACAAATAAAGCTGCAGTCTGGATAAAATGATAGCAGGAGGTTCTGATTCTGGTTCTGTTTGATGTGTTGATGCTCCTCTGACTGTAGTTAAGAGGATGGGTATCTGGATCAGTCCTACTCCAAGTTGGAAATCTGCTAATGCACTGTGGATCTTTGGTGGAGCTGCATGAGTTGAGTTATATTAGCGTAAAATCcagtaatattactctactttCTCAGTCAATCgggatcgggagatcgctggtttgaatttcggtcatgcagctcgccatcagctgccaaaaCCCTAGAGAGCCCAATtggacttgctctctctgggtgggtacagtcgatggcgctctttcccctcatcactccaaagggtgatgtggatcagcacaagactgcgtctgtgagctgttgtatcagaaccaagtcgctgcgctttcctccgagtgttagcgctgtgatgctactcggtaatgctacagcatcagcagcagttcaaaaagaggctgagtctgacttcacatgtatcggaggaggtgtgtgctagtcttcaccttccttgtgttgtggctgttgtcactagtgataaggggtTATACAGCTAAGTAGCAGCTGAATATGTGGGACAATTTGCATAgctaaattggaagaaaaacaaaaaggaaacaaatgcatgtgtacagctgtctATAAAGGGCTGCTCATAGCGTGTTTTGTATTAATTGCAGtggagtaaaaacaaaaatatgctcctcacctgtagggggagcccaggagccACATTTTAGACATGCTGGATTGTGTGTTCTAATGCTAGTCATACTAGCTTTATTCAGAATGGAAGTGATGATTAATTTCAGTGGAAATTGTTATAGTAAAGAATTTTGTAAAACATTGGAAACGTTTATGTATTTTCTGCTTAAATGTTGTACCTTTTAACCAGTGATACAATGAAGATCAAAAACATGTCATTCGACCGTTTAAGTAAAACACGGTTTGGGATACGGACCCCATGATTAGCATGTTTAGCATGATGCTAAGCTAAAAGCTACTCAGTGGAACCTCTACTGGTCTAGATTTGGGTCagattatatgttttttttttttatggagaaTCTccatttaattgaattgaattgaatcaaTTGTATACTGTTGTGTATTAAATTCCATTGTATTCCGTTACGGAATTTCAAGATTGTATTGTCCTTTCTGTACAAGAATAACAACAATATTTCATCTGCATGTGTGTCCTCCTCCTTCAACaccacctgtctgtctgtctttagcATGCTGCTATGCTAACATTCTGTGTGTGGATGTGCACATTTAACCCTgcagatgttttaaaaaaagaatattttaatagtaaaaagaTCTATTAAATGTAATCGACCATGA
>XM_007254561.3
TGAGTAGCGGGGCAGGGGCACCGGGGGAACCGGGCGGTGGGTAGTCATGTCCGCGGCGGAGCAGGGCTCATGGCTGCGGGGCGAGGTGGAGCGGCTGTCCCGGGAGCTGAGCGAGACGACCCGGGAGAAGATCCAGGCGGCGGAGTACGGGCTCGCCGTGCTGGAGGAGAAACAGCAGCTCAGCCAGAGATACGAGGAGCTGGAGGGGGAATATGAGACCCTCAGacaggagctggagcagctcaGAGAGGCTTATGGCCACGCCCACTCCGCCCAGAGGAAGGTTGCGGCGGACGGAGAGAGCCGGGAGGAGTCCCTGATCCTGGAGTCCGCATCTAAAGAGGCTTTCTACGAGCAGAGGGTTCAGGATCTGCAGGCCGACCTGCGACAGACCAGAACCACCCTGACCAGCACACAGGCTGAAAACGAGAGACTGGCCGCTCTCGCGCTCGAGCTGAGAGAGagTAATGAGCTGGTGGATCTGCAGCGAGCTCGGCTGCGGGATGATATCAGGGAGTTTAAGGTCAGAGAGTCTCGGCTGCTGCAGGACTACactgagctggaggaggagaacatcaCCCTGCAGAAACAGGTCTCTCTGCTCAGACAGGGACAGGTGGAGTTCGAGGGTCTGAAGCATGAGATCCGCCGGCTGGAGGAGGAGGCGCAGTACCTCAACAGCCAGCTGGAGGACGCCGTCCGGCTGCGGGAGATCGCCGAGCGGCAGCTGACCGAGGCTCTGGAGACGGTGAAGACCGAGCGCGAGCAGAAAGCGGCCCTGAGGAAAGAACTGACCAATCACATGACCCTCGGGGACTCGCTCCTCGCCAGCTCTCTGGACACGCTGAAGCTCGGTCTGGACGAGCCCAACAACGACGAGGCCGTCCGCACCTTCGAAAACGGCTTCGCCAAGATGGTGGACAGCGACGAGGACAACCGGTGCTCCACCCCCAAGAAGGGCGAGCGGTTCCGACCGGCGCCGAGTCTGGTGGACGATCTGCTGAGCGAACTGAACATCTCAGAGATCCAGAAACTCAAACAGCAGCTCGTCCAGGTTGAGAGGGAGAAGGTGGCTCTGCTCTCCACTCTGCAGGAGTCTCAGAAGCAGCTGGAGCAGGCCCGCGGCTCTCTGGCGGAGCAGCAGGAGGCGATGGCGAGGCTGAGTGATGATCTGGGGGCGATGAGGAGGTTCCACGCCGGTAAAGAGCGTCAGTCGGCTCTGGACAGCGAGCGGGAGCGGGACAGCCGAGAGGAAGGAGACGTGGACTATTACGAGCTGGACATCCACGGGCCGGAGATCCTGCGCTGTAAATACGAGGTGGCCGTAGCCGAGGCCGGAGAGCTGAGGGAGGAGCTGAAGGCGCTGAAGGCGGAGCACGAGGAGGTGAGGGCGGAGCATACGGAGGTGCAGGAGCGTCTGGAGAGTCAGGTGCGTGATCTGAGCTCTCAGGTGTCTGAGCTGGAGAGCGGGGGCCGGGTGGACCGGGAGAAGTTGGCGCGGCTGCAGAAGGAGCTCCAGGAGACCAGCGTTCTGGCGGGAGAATCTCAGGGAGCGCTCAGCGTGGCTCAGGATGAGCTGGTGGCCTTCAGCGAGGAGCTGGCCAACCTGTACCACCACGTCTGCATGTGCAACAACGAGACGCCCAGCCGCGTCATGCTCGACTTCTACAAAGAGGGGAAAGGAGCCGACGGCAAAGCGACCCGTCCATCATCTACACAAACACCCGCTGGCTCGGAACCGGCCCCGCCCCCCTCCGAATCCACACACAGCACCACGAACAGCGCCCCCGCTGGCCCGGCACGGGAAGACTCCAAAAAGGAGCCGATGGACGTTTATAACCTGGTGGCCATCATCCGGGACCAGATCCGGCACCTCCAGCAGGCGGTGGACCGCACCACCGAGCTGTCCAGGCAGAGGGTGGCCTCTCTGGAGCTGAACGCTGTGGCCGATAAAGACCAGACGGCCTGCATGGAGGAGATCCTGAAGCTCAAGTCCCTGCTGAGCACTAAACGAGAACAGATCGCCACGCTGAGGACCGTGCTCAAAGCCAACAAACAGACGGCGGAGGTGGCTCTGGCCAACCTGAAGAGTAAATATGAGAACGAGAAGACGATCGTCACAGAGACGATGATGAAGCTGAGGAACGAGCTGAAGGCTCTGAAAGAGGACGCAGCCACCTTCTCCTCCCTCCGAGCCATGTTCGCcaccagGTGTGACGAGTACGTGACTCAGCTGGACGACATGCAGAGGCAGCTGGCGGCGGCTGAGGACGAGAAGAAGACGCTGAACTCGCTGCTCCGGATGGCCATCCAGCAGAAGCTGGCTCTGACCCAGCGCCTGGAGGACCTGGAGTTCGACCACGAGCAGTCGCGCCGGGGCAGTAACCCCGCCCCCCGGGGCAAAGGACCCTTCTCTCGGGGCAAGGGGCCGGCCTCGTCGTCCAGCCCGCACTAATTTTATTTGCCAAGGAGGGAGCCGTGGTTAAGCAAATCATCCTgacagtcctgctccacagcgCTTCAGACTACAcgagtgtacacacacacacacacacacacacacacacacacttacacacttccTTCCCTCCTTAGATATGCAGGCAAATGAGCTTAATGATATTTAAAGAGTCCTGCAGCTTTATCAGTACGTTTTTCTTATTTATCGTCCaggtttgttctgtttttttgtttatgggTCTCACTTTTTAGAACTACTGtctttaataactgttattacacatttaataaCAATGATATGTCATATGTCATATCTCTATTTGTAGTACAGTTATTCAATTACAGTGCTACAGtttgtctaaaaaaaatcagcttcaATTTgacttattgttattattgacTATTACACAAGTGTATATCAATAGCTGTggttatatatgtgtaataagaTGTTATACCATTATTGTTGATACACATGTATTTGCATTAGTTGTACTGCTGTAATCCATCTgtaagtgctggatgttaatctacacagatttctctcctgaaaactgtgcatttgggtgagtaaaacgctttagtgtatttacattaagcttagattcccaaatttctccagcactaaggctggagcattagcattagcggctaactactagcagttagtggctaatggcgcccgacagcactacactgaggaaccttgagtgttctggtaagccagggaggTATTAGCTAgaggttcgtcccacgtagcttgttttaacacggtaaacctGCATTACTTGCCTCTGAGTGggtaaagagctagcacttagctcggttagcggctaatgctaatgctgctccagcagtgctagccggagttaacagcagactacaggccgataatactcacctcttaacagcaaaagagctagtttGGGTAACaggttatgctaatgctgctacagcagtgctagccaggaatAAGAGCAGACTACAGTTTGataataatcacctctgaatgggaaaatagcggttagcggctaatgctaataccgttccagccttggtgctggagaaactt

Function

NR:

description
PREDICTED: protein bicaudal D homolog 2-like isoform X1

GO: NA

KEGG:

id description
K18739 BICD; protein bicaudal D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254560.3 True 5483 mRNA 0.52 8 19537001 19564176
XM_007254561.3 False 3532 mRNA 0.56 9 19534667 19564175

Neighbor

gene id symbol gene type direction distance location
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 48590 19424040 ~ 19486077 (-)
LOC103044542 NA coding downstream 117159 19391793 ~ 19417508 (-)
LOC103044861 NA coding downstream 143767 19358413 ~ 19390900 (-)
LOC103037635 NA coding downstream 188360 19315818 ~ 19346307 (-)
LOC111195448 NA coding downstream 221908 19282103 ~ 19312759 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding upstream 11522 19575698 ~ 19604021 (-)
LOC103043652 LOC108440521 coding upstream 221398 19785574 ~ 19792464 (-)
LOC111195449 NA coding upstream 322903 19887079 ~ 19891108 (-)
LOC103042725 LOC103042725 coding upstream 348699 19912875 ~ 19917461 (-)
traip traip coding upstream 679549 20243725 ~ 20253893 (-)
G191337 NA non-coding downstream 105707 19418231 ~ 19428960 (-)
G191339 NA non-coding downstream 206045 19327966 ~ 19328622 (-)
G191329 NA non-coding downstream 281578 19252876 ~ 19253089 (-)
G191328 NA non-coding downstream 285214 19249204 ~ 19249453 (-)
G191326 NA non-coding downstream 305493 19228734 ~ 19229174 (-)
LOC111195401 NA non-coding upstream 46208 19610384 ~ 19618060 (-)
G191357 NA non-coding upstream 56000 19620176 ~ 19620410 (-)
LOC103035771 NA non-coding upstream 57124 19621300 ~ 19623690 (-)
G191402 NA non-coding upstream 183524 19747700 ~ 19757762 (-)
G191418 NA non-coding upstream 215995 19780171 ~ 19784989 (-)
LOC103036492 card19,LOC108443695 other downstream 6087 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 632382 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 735752 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1219330 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 1321137 18139363 ~ 18213530 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1535171 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1865840 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1946748 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2282793 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2785171 22349347 ~ 22362458 (-)

Expression


Co-expression Network