LOC103042725 (LOC103042725)


Basic Information

Item Value
gene id LOC103042725
gene name LOC103042725
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19912875 ~ 19917461 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254575.2
GCTGGAGACATCTGCGCAAACACCAAAGAAACAGAACGGAGTTGTGGTCAGCCAACATGTCTCGATTGACCTTCATACTCACGCTTCTCCAGGTACCTGCTGTTCTTCTGTGGACAGATTATCAGACGGTGAATATCCAGGCCTACACTCGGATAAGAAGCAATGGCTCTGTAGATCAGGGTGTGGTGGTGCTGGTGAATGATGCCATATTTGCGTACTTTGACAGTGGAAACAAGACATTTGTCCTGCGTCCCAGTGCGACCATGGGCTTCTCCGTGCTTGGGGAAAGCGATCGGACTTTCTGCCTGTACGAAGTTCTGCATGGGTTTTACAGGCAGAAGGATTATCTGTCCAAGCTCAGAGAGAAAACAGGAGGGACCAAACCTCTATTGGTTCGGCCATCAGTCAACGTGTACCCCCAGTTCCCCGTGACAGAAGGTCAAGCTAATGTTCTCTACTGCTATGCCACCGGGTTTTACCCTGGAGATATAGAAATCAACTTCTTCCTCAATGGTCGCCCATCTGCTGAGGATGGAATCATGTCGGATCTGATGTATAGTGAGGACTGGACTTACAGGGTCTATAAGTACATGGCCATCACCCCACGTCCTGGTGAGGAATATTCTTGTGAGGTGAAGCACAGCAGCATGGCAGAGCCTAAGATGTCCCTGTGGAGGCCTGAATTTCCAGCATTCACACCAGGGTTCTCCTGGATTTTTGGACTGATACCTGGTCTTGTTTGTGGAATCATTGTTTCTGCCGTGCTTTTCAGAAGAAAATTACACTTCCAACTTTAattgttgttcttttttatttaatattactgtGCA

Function

NR:

description
DLA class II histocompatibility antigen, DR-1 beta chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254575.2 True 830 mRNA 0.47 4 19912875 19917461

Neighbor

gene id symbol gene type direction distance location
LOC111195449 NA coding downstream 21767 19887079 ~ 19891108 (-)
LOC103043652 LOC108440521 coding downstream 120411 19785574 ~ 19792464 (-)
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 308854 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 348699 19534667 ~ 19564176 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 426798 19424040 ~ 19486077 (-)
traip traip coding upstream 326264 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 584847 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 877952 20795413 ~ 20807451 (-)
bhlhe40 bhlhe40 coding upstream 899136 20816597 ~ 20821524 (-)
itpr1 itpr1 coding upstream 919657 20837118 ~ 21072418 (-)
LOC111195457 NA non-coding downstream 26191 19880925 ~ 19886684 (-)
G191429 NA non-coding downstream 48863 19810655 ~ 19864012 (-)
G191419 NA non-coding downstream 126524 19786115 ~ 19786351 (-)
G191418 NA non-coding downstream 127886 19780171 ~ 19784989 (-)
G191402 NA non-coding downstream 155113 19747700 ~ 19757762 (-)
G191484 NA non-coding upstream 93017 20010478 ~ 20068271 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding upstream 152228 20069689 ~ 20146623 (-)
LOC111195458 NA non-coding upstream 231157 20148618 ~ 20153059 (-)
G191507 NA non-coding upstream 264426 20181887 ~ 20243173 (-)
G191518 NA non-coding upstream 352160 20269621 ~ 20271923 (-)
LOC103036492 card19,LOC108443695 other downstream 384295 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1010590 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 1113960 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1597538 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1736711 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1181886 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1512555 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1593463 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 1929508 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2431886 22349347 ~ 22362458 (-)

Expression


Co-expression Network