LOC103043652 (LOC108440521)


Basic Information

Item Value
gene id LOC103043652
gene name LOC108440521
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19785574 ~ 19792464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254578.2
GGTGGTTATAATCCTTTGCTCACTTGGTGTCTGACCTGTATGTAACTAACAGTACATGTCTTTCTTGTTTAGTGGCCTTGCTTGCTATAGTAAGGAAAAAGagcatggatggatggtggaGATTTGGTCAGTAGGCATTATGAGTCTTAAGTCAGGGGCTTTGGCACTTaatctaaaagagagagagagagaaaaaaaagagagggagagagagtaagaggtCAAGCAGTGCTGACAGAAAACAAGTATAAGCTTAACACATCTTAATACTTTTCCACCTGAACAGTTCACAGGTTACAGGTTCTGAGAAGAAGAACAGAATCTGACCAGTTTCTCTTgtattattgtaaatattagtgtagttattatatagtaatgcagtaatgcagtaatgtagtaatattgtaatagtgaagaaggaaaagaaaaagagagaggaggaacaCTGCATTAAATTGCATGTGTTCGAATCATTCCACATCACTGACTGAGCTGCTGCAGGACCCTCAGGACCCTCAGGAGCATGGCGCTGGTCCAGGACGACCCGGAGCATCTGAACTCTTCTTCGGTCCACAGCTTCTACGGTAGAGAAGTTCTGCTCCCCCGGGCCGGGCTGGCCACTCTCTCGGCCGTCATGGCCATGTTCTCGGTCACAGCTGTGCTCCTGAACTCCACAGTGATCGCAGTGACCCTGTGGCACCGCCAGCTGCGCCAGCCGCTCAACTTCGCCCTGGTCAACCTGGCCGTGGCCGACCTGGGCACCACGCTGACCGGCGCTGTTCCATCTGTGGTGACCAACGCTGTGGGATACTACATCGCTGGACGAGTGGGCTGCGTGCTGGAGGGCTTCTGCGTGTCTTTATTCGGTATAACAGCGCTCTGCACCGTGGCTCTGATCGCTGTGGAGCGATTATTCGTGGTATGTAAGCCGCTGGGCACCATCATCTTCCATAAGAAGCATGCAGTGATGGGTGTAGCAGCGTCCTGGCTTTGGTCTCTCCTCTGGAACACTCCTCCTCTGTTCGGCTGGGGAAACTACGAGCTGGAAGGCGCTGGGACTTCCTGTGGGCCAGACTGGCAAAACAGAGACCCGTCAAACTTCTCCTACATCATCTGCTACTTCTTGCTGTGCTTCGCTGTGCCGTTTCTTATGATCGTGGTGTCGTACTCCTGGCTGCTGTGGACGCTGAGGAAGGTGGCTAAAGTTGGAGGTAGGTCAGCGGCGAAGGCGGAGACTCGGGTAGCCtggatggtggtgatgatggtggtggcgtTCTTGGTGAGCTGGATGCCGTACGCCACTCTGGCTCTAACCGTGGTCTTTAAACCTGACGTGAACTTCAGTCCTCTGGTGAAAGTCATGCCCATCTACATGGCCAAGAGCAGCACCATCTACAACCCAATGATCTACATCTACATGAACAAACAGTTTCGGACGTACGCTGTGCCGTTCCTGCTGTGTGGGAGGAACCCATGGCcttcagaagaggaagaagatgaagaagcaACAACAGAGGTTCAGACCGCTGTGAGCCACGTGAACAACAGAGTCAGTCCAGAGTGATCAGATTAGCTAGAAAATTAGCCTTAGCATTGGTctgtttaccaaaagactgaCTGCCTTTATGTGTGTaaatttcactcacatgtaatttgattagcactgctgaggaaaatgtatTCTGTGTTTAGTTGGTGTCTGTTggtatgttaaaaatgttcaatgtttaataaatatttgtaaatttta

Function

NR:

description
PREDICTED: parapinopsin-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254578.2 True 1750 mRNA 0.49 4 19785574 19792464

Neighbor

gene id symbol gene type direction distance location
LOC103035977 tkta,LOC108443693,LOC107578334,LOC107582382,LOC107743250,LOC107694867 coding downstream 181553 19575698 ~ 19604021 (-)
LOC103037097 LOC108443694,LOC107743251,LOC107694868,LOC107578651,LOC107696460 coding downstream 221398 19534667 ~ 19564176 (-)
LOC103044255 wnk2,LOC108443687,LOC107743253,LOC107694869 coding downstream 299497 19424040 ~ 19486077 (-)
LOC103044542 NA coding downstream 368066 19391793 ~ 19417508 (-)
LOC103044861 NA coding downstream 394674 19358413 ~ 19390900 (-)
LOC111195449 NA coding upstream 94615 19887079 ~ 19891108 (-)
LOC103042725 LOC103042725 coding upstream 120411 19912875 ~ 19917461 (-)
traip traip coding upstream 451261 20243725 ~ 20253893 (-)
LOC103041184 LOC107715794,LOC107659533,LOC107575741,LOC107685972 coding upstream 709844 20502308 ~ 20622494 (-)
LOC103032600 arl8b,LOC103032600,LOC107095653,LOC108435203,LOC105934196,LOC108255114,LOC107385792,LOC103386496 coding upstream 1002949 20795413 ~ 20807451 (-)
G191418 NA non-coding downstream 585 19780171 ~ 19784989 (-)
G191402 NA non-coding downstream 27812 19747700 ~ 19757762 (-)
LOC103035771 NA non-coding downstream 161884 19621300 ~ 19623690 (-)
G191357 NA non-coding downstream 165164 19620176 ~ 19620410 (-)
LOC111195401 NA non-coding downstream 167514 19610384 ~ 19618060 (-)
G191429 NA non-coding upstream 18191 19810655 ~ 19864012 (-)
LOC111195457 NA non-coding upstream 88461 19880925 ~ 19886684 (-)
G191484 NA non-coding upstream 218014 20010478 ~ 20068271 (-)
G191491 gnai2,LOC105909893,LOC103358732,LOC101079922,LOC104930488,LOC103465228,LOC102228806,LOC104958439 non-coding upstream 277225 20069689 ~ 20146623 (-)
LOC111195458 NA non-coding upstream 356154 20148618 ~ 20153059 (-)
LOC103036492 card19,LOC108443695 other downstream 256994 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 883289 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 986659 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 1470237 18311452 ~ 18315337 (-)
LOC111195395 NA other downstream 1609410 18167240 ~ 18176164 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1306883 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1637552 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 1718460 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2054505 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 2556883 22349347 ~ 22362458 (-)

Expression


Co-expression Network