hmces (hmces)


Basic Information

Item Value
gene id hmces
gene name hmces
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12230416 ~ 12236146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256425.3
CACTGCGGAATGAAACGCGCCCCTATCTGGTGTAGAAGCGCCATTATTTAAGATACAGCTGGAGGACGCTGAGGAAAAACCCCGAGACTACTGAAGCCTATCAGCTGTTTAATGTCTGGCCTCTGCTTTTAGTgtatttattagcttttataaCATATTAACGCTATTTAAGAAGAAACctttaccaaaaaaaatcagGGTGAATCATGTGTGGGAGAACAGCTTGCACTCTTGCTCCAGATGAGATACAGAAAGCCTCCAGTTACAGAGACAGAACTGGTCAGCGCCGGCGGCCGCAGTGGAAGGACGGCGATGAAGACAAATACCGGCCGTCCTACAACAAGAGTCCTCAGTCCTCCAGTCCAGTCCTGCTGTCCAAAAGACACTTCAATAAGGAAGCTCCGGTAGATGAATGTGTCCTGGCGACGATGCGGTGGGGTCTTGTGCCTGCGTGGTTTAGAGAGAATGACCCCAGCAAGATGCAGTACAGCACTTCCAACTGTCGCAGTGAGGGCCTGCTGGAGAAGAAGTCTTATAAGGACCCTCTGCTAAAAGGCCAGCGGTGTGTCATTCTAGCCGACGGCTTCTACGAGTGGAGGAGGCAGGAGAAGGACAAACAGCCTTTCTTCATCTATTTCCCCCAGAGCCAGGAAGCACCAGGGCCCAGTCAGAGGGATGAGGAAGAGGGGGCTGATGGGAAGACAGTAAATGAACAGACTGAGGGCAAAGCAGAGACAAAGGAGGACGAAGAGGACAGCGAGTGGACAGGGTGGCGGCTGCTCACCATAGCAGGGCTGTTCGACTGCTGGGCTCcacctggtggaggagaagctcTGTACACTTACACTGTGATCACAGTGAACGCCTCACCAAACCTACAAACCATCCATGACAGAATGCCTGCCATTCTTGACGGAGAGGAAGAAGTGAGGCGATGGTTGGATTTCGGTGAGGTGAAATCTCTGGAAGCTCTTAAAATGCTTCAGTCTAAATCCTGCGTGACCTTCCATCCCGTCTCCTCATTAGTGAACAACTCCCGAAACAATTCACCAGAGTGCCTGCAGCCTGTAGATCCCACTGTCAAGAAGGCTCCACAGACATCAGCCAGCAGTAAGATGATGATGAGCTGGCTGAAAACAGGCTCACCCGTTAAAAGGAAAGAACCGGAGAATTCCGAAACTAAAGGACCTGAAGGAAAATCTCCATCACAGAAGCAGAAGCCTATTGGGCCGCTACAGCAGTGGCTGCTGGGGAACAGTTCCAGCAAGAGGCCAAGATCTTAAAGCTTGTATTTTCTATTTCTGTtggattttaataaaaaataaaaataagccaTACTTGTAGCACTTAAACTGGCTTGGTATTGGTATACAGGAGTTCTATATAGAATTTTAACAGCTGTTCACAGATAACCCTGTTAGACTTATGTTCCTAAATGGTTCTTGACTTGGACATTAAGTTCTAGGAACACTCTTTAATGAGTTAAGGACCTTGACCTTATGCTAAGGTTCTTTTGGTTGTAATACCCATCGTACCCATTAACATATTTCAATCTTAAAAGGAAGATTCTACAATGGTTattggctgtttttttatttactatttatggcatttagctgacatttttatctaaaatgacttacttacaaggttatttc

Function

symbol description
hmces Predicted to enable peptidase activity and single-stranded DNA binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus; protein-DNA covalent cross-linking; and proteolysis. Orthologous to human HMCES (5-hydroxymethylcytosine binding, ES cell specific).

NR:

description
embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256425.3 True 1658 mRNA 0.46 7 12230416 12236146

Neighbor

gene id symbol gene type direction distance location
tmf1 tmf1 coding downstream 22834 12182119 ~ 12207582 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding downstream 114557 12057532 ~ 12115859 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 696001 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 1074671 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 1370518 10834016 ~ 10859898 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 740 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 22648 12258794 ~ 12289011 (-)
LOC103039006 dnah1 coding upstream 160450 12396596 ~ 12473543 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding upstream 272766 12508912 ~ 12512461 (-)
ldlrad2 ldlrad2 coding upstream 282735 12518881 ~ 12526579 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding downstream 891 12221290 ~ 12229525 (-)
G189054 NA non-coding downstream 189561 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 191328 12038777 ~ 12039088 (-)
G189052 NA non-coding downstream 221358 12008843 ~ 12009058 (-)
LOC111195377 NA non-coding downstream 473307 11755397 ~ 11757109 (-)
G189159 NA non-coding upstream 91612 12327758 ~ 12328365 (-)
G189315 NA non-coding upstream 279795 12515941 ~ 12518663 (-)
G189316 NA non-coding upstream 292424 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 292998 12529144 ~ 12533333 (-)
G189319 usp48 non-coding upstream 302104 12538250 ~ 12540612 (-)
eogt eogt,LOC107729408 other downstream 51806 12160542 ~ 12178610 (-)
G189055 NA other downstream 186123 12043913 ~ 12044293 (-)
G188898 NA other downstream 1239022 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2274099 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4810610 7409122 ~ 7419806 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 61903 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 376465 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 378766 12614912 ~ 12619566 (-)
tsen2 NA other upstream 826653 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 3082497 15318643 ~ 15322175 (-)

Expression


Co-expression Network