LOC103038294 (LOC108444096)


Basic Information

Item Value
gene id LOC103038294
gene name LOC108444096
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18488677 ~ 18491448 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256676.3
CCCGTGGGCGAATAGGCGAACGGTAGACGCTATAAATTAGGAAAAGTTTAGGTGCAGATTGCAATGCCACCTACAAATGAGTGAGTAGGCCGCTGCACCGAGAGGATACAGATCTGCCTCTATGGATCTCTGCATCACCATCAAGGGCGTCTCCTTCCTCCTGCAGACGGGGCTGGGCATCATGGGTAACATGCTGGTGTTGGCGGCCTACGGCCATATTGCTTTGGTGGAGCCCCGGCTGCAGCCTGTAGACCAGATCATGGCTCACTTAGCCTTTGCTAACCTGATGCTGCTGCTAACGCGCGGCGTCCCCCAGACCATGACCGTCTTCGGGCTGCGGCACCTGCTGAACGACTCCGGCTGCAAGGTGGTGATCTATACGTACTGCATCACCCGGGCGCTGTCCGTCTGCTTCACCTGCATGCTGAGCGTATTCCAGGCCCTGACCATCGCCCCCGCCGGCGGCCCGAGGCTGGCCCGGCTCAAGGCTCGGCTGCCCCAGCTGGTGGCGCCCACCTTTGCAGGCCTGTGGCTGCTCAACATGGCGGTCTGCATCGCCGCCCCGTTCTTCTCCGTCGCGCCTCGCAACGGAACAGTGCCGCCGTTCACCCTGAACCTGGGCTTCTGCCACGTCGACTTCCGCGACAACCTGTCGTACGTTATTAACGGCGCCGCCGTCTCGGCACGGGACTTCTCCTTCGTAGGCCTCATGCTCGGCTCCAGCGGCTACATCCTGGTACTTCTGCACAAGCACAGCCGGCAGGTCCGGGCCATCCGCCGCTCCCAGGGCGGCTCCATGGAGATGCGGGCGGCGAAGACCGTGGTGATGCTGGTGGTCCTGTACGCCGTGTTCTTCGGCATCGACAACGTGATCTGGATCTACATGCTGACTGTAGCACAGGTTCCCGCCGTGGTGGCGGACATGAGGGtgttcttctcctcctgctACGCCACCCTCAGCCCCTTCCTCATGATCAGCTCCAACAAGAAGCTGAAGGAGAGGATGGTGTGTGCGGCGGGAGGCGAACAGAAGCAGGACGCTGCAGAGGACACTGACaaaactaatattaaataatattaacaatattaaatcATTCTAAATAAACAATCGGACTCTTGATTAACGCACAACTGGATAAAAATGTTTGATATTTGCACGCTTGGACATTGTTTGTATCCCCCCAAAAAAGGGTTAGCGTTACAAACAATTGTTAGTTAGGTTTGGGGGGGTCTAACGATTTATATATCCTTCTTACCTTtgatgtaaaatattatttaacaattaaTGTACAGTATCTATGTCTGGAAGAGTcttgtaataaagtaataagtaAAGTGGACCGTAC

Function

NR:

description
PREDICTED: vomeronasal type-1 receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016503 pheromone receptor activity molecular_function

KEGG:

id description
K04614 V1R; vomeronasal 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256676.3 True 1346 mRNA 0.55 2 18488677 18491448

Neighbor

gene id symbol gene type direction distance location
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding downstream 100 18483415 ~ 18488577 (-)
LOC103038600 LOC108444099 coding downstream 21625 18456589 ~ 18467052 (-)
nckipsd nckipsd coding downstream 37970 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 59918 18417224 ~ 18428759 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding downstream 75259 18401223 ~ 18413418 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 308481 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 358452 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 371117 18862565 ~ 18870053 (-)
LOC103032073 NA coding upstream 380803 18872251 ~ 18893531 (-)
LOC103033109 LOC103033109,LOC108443914 coding upstream 411969 18903417 ~ 18920755 (-)
G191003 NA non-coding downstream 110483 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 121467 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 127922 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 240303 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 259015 18228990 ~ 18229662 (-)
G191025 NA non-coding upstream 11054 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 180015 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 211957 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 232583 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 237391 18728839 ~ 18729268 (-)
LOC103041510 LOC108414096 other downstream 173340 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 275147 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 312513 18167240 ~ 18176164 (-)
G190788 NA other downstream 1268897 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1294930 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 216871 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 406061 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1019873 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2607899 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2938568 21430016 ~ 21436453 (-)

Expression


Co-expression Network