LOC103038600 (LOC108444099)


Basic Information

Item Value
gene id LOC103038600
gene name LOC108444099
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18456589 ~ 18467052 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256677.3
CCAGCTGTACCATCAGTTCCGTCCATCAGAAACCCAGAGCCGGGGATACAGGATGGCAGAGTTTGACGTTGTTGTGGTGGGAACTGGGCTGAAGGAGTGCATCCTCTCAGGCCTTCTGTCTATCTGTGGGaaaaaggttcttcacattGACCAGAATCCACATTATGGAGGAGAATGCGCATCTTTATCACCCCTGGAAGAgGTGTATAAGAGGTTTCATGTGCCGGGGCCTCCTAAAGGAATGGGGCAGGGCAAAGAATGGACCATCGATCTAGTTCCTAAATTTATGATGTCCAACGGGCAGATGGTGAAGATGCTGCTGTATACGGAGGTGACGCGCTATATGGATTTTAAGGTGGTGGAGGGCAGCTTTGTGTACCAAGCTGGAAAAATTCACAAGGTTCCAGTTACAGAGGCGGACGCACAAGCTTCAGATTTGATGGGTATGTTTGATAAGCGGCGTTTCCGGAAGCTTCTGCTGTTTGTTCTGAACTTTGATGAGCACGACCCTCGAACCTTTATGGACATGGACCCCAACAGAACCACCATGAGGGACGTGTTCAAGCACTTCGACCTGGGGACGGACGTGGTGGAGTTTATCGGACACGCGCTCGCCCTGCAGGATGGCGACGAATACCTGGACCAGCCGTGTCTGCAGACGATAAAGAGGATTAAGCTTTACTCTGATTCTCTCGCTCGTTACAACCACAGCCCTTACCTGTATCCCCTCTTCGGTCTGGGAGAACTTCCACAGGGATTCGCCAGGTTAAGCGCTATGAATGGATGTACGTATCTGCAGAACCGGCAGGTGGAGGATATCATCATGGAGAACGGCAGAGTGGTGGGGGTGAAGTCTCAGGGAGAGGGTTTCCGCTGTAAGCAGCTGCTCTGTGATCCCAGCTTCGCTATGGGCCGGGTCAGGAAAGTAGGGCGGGTCATCCGGGTCATCTGCATTCTGAACCATCCAATCAGAAACACGCAGGACGCCAGATCCGCCCACATCATCATTCCACACGCACAGGTCCACCGGAAATCCGATATCTATGTGTGTATGGTGTCGTATGGTCATAACGTGGCTCCAGAAGGGAAGTATATAGCCGTGGTGAGCACCAGTGTGGAGACTGGAAACCCAGAGAAGGAGGTGCAGCCGGGACTGGCACTGCTGGAGCCCATCGCTCAGAAGTTTGTCTCCATTAGTGACCACATGGTGCCCATGGATGATGGAAAGCGAAGTCAGATCTTCGTCTCTCGTTCGTACGACGCTTCCTCGCACTCGGAGGCGGAGTGTGAGGATATTAAAGATCTGTTTCGCCGAATGACGGGAGCAGAGTTCTGCTTCGAGGACTTTCACAGAGACGGCGATGatgattaaaaagataaaaagatacaCAGACAAAACTCTAACTAAAGACAACTCTTAAAAAAGGCCAATTCACTGACTGTTTCACTCAGGAtaattagcctgttagcagctTTAGAGAAATATGTGCTCGGTCCaagtttttaaaagtattaaaaacaagaaacaaaaaattgGTCTGCAATGTATGGAAGCTCATTTCCACCACTTAAAACTAAATTATGGGTGCTCCAGGACGTCATAATTCTTAGCAAgttaaattattacatttttaggaaataaatatatattactttctcttttcttgtGTTAGTGTAAGACATTTTGCTTACTTTAGGAACAACAACcaaatttattatataaaatcagGGATTTTACTTAGGATTCTTACTAGCCTTACTTTTTGATTTTGAGGATTTTGCTAATCTTAGGAAATTTTACTTAGAAAAAAATAGCTGACCCCATTAGCagattggtttgtttaatataaacataaaggTCTCAATAATGACCTAAACTAGACAAAAAATAGACAGAATATATGGAAATTAAGACGTTTATGTTTGTATTAAGCAAGAAAACTGCCAACAGGGTAAGATAAGAAGTAaggtaagacttaaatcaagtaAATATCACAGATTCTTTGGATTAAATTTGGATACAAGAGTCAGCATAAGTTGAGCAATTACTTTTTTGGGCTTATTTTGAGGCAATTTACTTCAAATAAGGTGctcaccatcagcagccggagtccgagagagcacaattgtccatgctctctctctctgcatcacATCCAAGGTGATTTCGGTCAACACAggcttctgttagctgatgtgtcAGATGtgggtcgctgcgctttcctccaaaaagaggcggagtctgatttaacgagtatcggaggaggcatgttctggtcttcaccctcccagTGTTTTGATCATTACTAAGGATAAGGGAGTCCTTATGTTTGGGTGGGGTAATCGGCCTTCaaatttggggagaaaatggaataaaagtataaaattaaataaagttatataaaataagcaaaataatcttacacgTACACAATATTTAGTAAGACCAAGATATAAGGCATTGCCTTGAAATAAGAGAATTTTACTtgctaaaatgtttgttttagtacatttaaattttgtttaagtacatttaaaaccCAGACTCACACTGATAGAGCAGTTTAACTCTAGCTGAGCGGTAGAGTGGCCTATAGTCAAGCTGACTGACCAGATTAacgtttttttaaagcttttttaaaaattattttgccATCTTTGACCATTTTTGCAAGgtccatctcaaaaaaaattattctttattttcccAAACTGTGTCTAAATAATTGCATGATCTGTAAAAGCTGTAATAAAGTATCTGAAGAATATTTatggtatataataataataattcagtgttttactcTGTAGGGATTTAAGGCCCCCAGTTTAAATCTTGAGAAGGACAGAAGGGAAATAAGATagggagggagagatggagaacagagagaaacagatagagggagagagtgagagagagagagagaaaaagagaagagttGAGTCAGAGGTTAATGAGGCTTTACCTACAGTGAATTTGGGACACTGGCCGCTACTTTAACTACAGGATTACAGACACTTTCTACTGAGTGAGTGAACTGAGAACTCAGAGTCTGGATATATATCCCAATACAGGGGTATAcgattcaatatatcacaatatattgtgatccTGTAACCATggtgatatattgtttaaagtgaaatttagtataaa

Function

NR:

description
PREDICTED: rab GDP dissociation inhibitor beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256677.3 True 3157 mRNA 0.42 11 18456589 18467052

Neighbor

gene id symbol gene type direction distance location
nckipsd nckipsd coding downstream 5882 18434535 ~ 18450707 (-)
slc25a20 slc25a20 coding downstream 27830 18417224 ~ 18428759 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding downstream 43171 18401223 ~ 18413418 (-)
necap2 necap2,LOC108414094 coding downstream 154357 18289441 ~ 18302232 (-)
crocc LOC108415825 coding downstream 167844 18245810 ~ 18288745 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 16363 18483415 ~ 18488577 (-)
LOC103038294 LOC108444096 coding upstream 21625 18488677 ~ 18491448 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 332877 18799929 ~ 18844551 (-)
acy1 acy1,LOC107575257,LOC107655273 coding upstream 382848 18849900 ~ 18861224 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding upstream 395513 18862565 ~ 18870053 (-)
G191003 NA non-coding downstream 78395 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 89379 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 95834 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 208215 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 226927 18228990 ~ 18229662 (-)
G191025 NA non-coding upstream 35450 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 204411 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 236353 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 256979 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 261787 18728839 ~ 18729268 (-)
LOC103041510 LOC108414096 other downstream 141252 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 243059 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 280425 18167240 ~ 18176164 (-)
G190788 NA other downstream 1236809 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1262842 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 241267 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 430457 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1044269 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2632295 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2962964 21430016 ~ 21436453 (-)

Expression


Co-expression Network