slc25a20 (slc25a20)


Basic Information

Item Value
gene id slc25a20
gene name slc25a20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18417224 ~ 18428759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256680.3
TCTCGGTGCAGCAGTGCAGCACTGAAATGTGTCCGGGTGGATTATGTAGGTGAAAGGTCCCCTGATCGGTAACAGGAACAGCAGATCCCATAAACATGTCGAAGCAGCCGCAGCCCATCAGCCCTGTGAAGAACTTCTTCGCCGGCGGGTTTGGAGGTGTGTGTCTGGTGTTTGCTGGACATCCACTGGATACAATCAAGGTGAGACTCCAGACTCAACCGAAGCCAGGACCGGGTCAGACTCCTCTCTATGCCGGAACTTTTGACTGCTGTAAAAAGACCCTCGCCAAGGAGggcgtGCGAGGGTTGTATAAGGGCATGGCTGCTCCGATTATCGGAGTCACTCCCATGTTCGCTGTGTGTTTCTTTGGGTTTGGTCTGGGGAAGAAGCTGCAGCAGAAAAGCCCAGATGATATTCTCTCGTATCCTCAGCTGTTTGCGGCCGGTATGCTGTCCGGGGTTTTCACTACAGCAATCATGGCTCCTGGAGAGAGAATTAAATGTCTCCTGcagATCCAGGCTGCCTCCGGAGAGGTGAAGTACGCTGGACCGATGGACTGTGTGAAGCAGATCTACAGGGAAAGTGGCATAAGGGGCATTTATAAGGGCACCGCACTGACCTTAATGAGAGACGTGCCGGCCAGTGGAATGTATTTCATGACATATGAATGGTTGAAGAACCTCCTCACACCAGAAGGAAAAAGcccgAATGAACTGAGCGTGCCCAGTGTGCTGTTTGCAGGCGGTATGGCGGGGATCTTTAACTGGGCTGTGGCGATTCCACCTGATGTACTAAAATCACGTTTTCAGACAGCTCCAGAGGGGAAATACCCCAACGGGTTCCGGGACGTCCTGAGGGAGCTGATCAGGGAGGAGGGCGTGGCCTCGCTGTATAAGGGTTTTAATGCAGTCATGCTGAGAGCGTTTCCCGCCAACGCCGCATGCTTCCTGGGATTTGAGTTGGCGATGAAGTTTTTGAACTATATCGCACCAAACCTGTGATCTATAACCTAATGAAGGCCAAAGAGCCAGAGATGGCACCTGaatgtttcacacacacacacacacacaacacacacacacacacacactcttggaCTTCATATCCTGTGCAGGAGCTCtgcacaatacaatacagacTGTATAGCAGTACTTGGGTTATATGATGAATATCATGAACACCCAGAATAGATAGGTGTTATTAATAGTTAGATACTAATATTAATTAGTATTACTGTTATTAGTCTGGTAGCGAttaaaatgcaatatattgtgcagctctacTTGGTGCCATCAGTaagctgtaacacacacacaacacacacacacacacacacacacacacacacacaaatgaacgTCGGGACTTATACGCCATTCGACTTACTTctgttttgctgttgttttgtttgtttgtatctttgattttaacagtgATGAAGAGGACTGATGATGTGCCTTATCGTGTCAGGCTGTGAATTCAGTCTCTGTCGTCTCTTCAGGGAATAACATCACACTTCTGTTGTTTCAGTCTCCACCTTcatgtccctctctctctctttgtctctttaaGAGAAAGAACACATTTAAAGAGTACTCCAGTCTGTTTAAACTTAAAATGCTTGTCCAATCTCTGGAAGTATAAATGTCACcattcagccataacattaaaaatataatataatttaatgta
>XM_015607725.2
TCCGGGTGGATTATGTAGGTGAAAGGTCCCCTGATCGGTAACAGGAACAGCAGGTCTGTCCTTTCCAGCTGTAAACTCCgctttatctgtttatttaccCACTAATCCTCTCGTGAACACCTCCTAAACCTCCTCCTGTCCTCCACAAGATCCCATAAACATGTCGAAGCAGCCGCAGCCCATCAGCCCTGTGAAGAACTTCTTCGCCGGCGGGTTTGGAGGTGTGTGTCTGGTGTTTGCTGGACATCCACTGGATACAATCAAGGTGAGACTCCAGACTCAACCGAAGCCAGGACCGGGTCAGACTCCTCTCTATGCCGGAACTTTTGACTGCTGTAAAAAGACCCTCGCCAAGGAGggcgtGCGAGGGTTGTATAAGGGCATGGCTGCTCCGATTATCGGAGTCACTCCCATGTTCGCTGTGTGTTTCTTTGGGTTTGGTCTGGGGAAGAAGCTGCAGCAGAAAAGCCCAGATGATATTCTCTCGTATCCTCAGCTGTTTGCGGCCGGTATGCTGTCCGGGGTTTTCACTACAGCAATCATGGCTCCTGGAGAGAGAATTAAATGTCTCCTGcagATCCAGGCTGCCTCCGGAGAGGTGAAGTACGCTGGACCGATGGACTGTGTGAAGCAGATCTACAGGGAAAGTGGCATAAGGGGCATTTATAAGGGCACCGCACTGACCTTAATGAGAGACGTGCCGGCCAGTGGAATGTATTTCATGACATATGAATGGTTGAAGAACCTCCTCACACCAGAAGGAAAAAGcccgAATGAACTGAGCGTGCCCAGTGTGCTGTTTGCAGGCGGTATGGCGGGGATCTTTAACTGGGCTGTGGCGATTCCACCTGATGTACTAAAATCACGTTTTCAGACAGCTCCAGAGGGGAAATACCCCAACGGGTTCCGGGACGTCCTGAGGGAGCTGATCAGGGAGGAGGGCGTGGCCTCGCTGTATAAGGGTTTTAATGCAGTCATGCTGAGAGCGTTTCCCGCCAACGCCGCATGCTTCCTGGGATTTGAGTTGGCGATGAAGTTTTTGAACTATATCGCACCAAACCTGTGATCTATAACCTAATGAAGGCCAAAGAGCCAGAGATGGCACCTGaatgtttcacacacacacacacacacaacacacacacacacacacactcttggaCTTCATATCCTGTGCAGGAGCTCtgcacaatacaatacagacTGTATAGCAGTACTTGGGTTATATGATGAATATCATGAACACCCAGAATAGATAGGTGTTATTAATAGTTAGATACTAATATTAATTAGTATTACTGTTATTAGTCTGGTAGCGAttaaaatgcaatatattgtgcagctctacTTGGTGCCATCAGTaagctgtaacacacacacaacacacacacacacacacacacacacacacacacaaatgaacgTCGGGACTTATACGCCATTCGACTTACTTctgttttgctgttgttttgtttgtttgtatctttgattttaacagtgATGAAGAGGACTGATGATGTGCCTTATCGTGTCAGGCTGTGAATTCAGTCTCTGTCGTCTCTTCAGGGAATAACATCACACTTCTGTTGTTTCAGTCTCCACCTTcatgtccctctctctctctttgtctctttaaGAGAAAGAACACATTTAAAGAGTACTCCAGTCTGTTTAAACTTAAAATGCTTGTCCAATCTCTGGAAGTATAAATGTCACcattcagccataacattaaaaatataatataatttaatgta

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

NR:

description
PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256680.3 False 1692 mRNA 0.47 10 18417224 18428759
XM_015607725.2 True 1757 mRNA 0.47 9 18417224 18428728

Neighbor

gene id symbol gene type direction distance location
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding downstream 3806 18401223 ~ 18413418 (-)
necap2 necap2,LOC108414094 coding downstream 114992 18289441 ~ 18302232 (-)
crocc LOC108415825 coding downstream 128479 18245810 ~ 18288745 (-)
atad3a atad3a,LOC103357928 coding downstream 208528 18194807 ~ 18208696 (-)
LOC103031655 NA coding downstream 267587 18144575 ~ 18149637 (-)
nckipsd nckipsd coding upstream 5776 18434535 ~ 18450707 (-)
LOC103038600 LOC108444099 coding upstream 27830 18456589 ~ 18467052 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 54656 18483415 ~ 18488577 (-)
LOC103038294 LOC108444096 coding upstream 59918 18488677 ~ 18491448 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding upstream 371170 18799929 ~ 18844551 (-)
G191003 NA non-coding downstream 39030 18377640 ~ 18378194 (-)
G190997 NA non-coding downstream 50014 18362081 ~ 18367210 (-)
G190990 NA non-coding downstream 56469 18310476 ~ 18360755 (-)
G190988 NA non-coding downstream 168850 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 187562 18228990 ~ 18229662 (-)
G191025 NA non-coding upstream 73743 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 242704 18671463 ~ 18675406 (-)
LOC111195398 NA non-coding upstream 274646 18703405 ~ 18721914 (-)
G191095 NA non-coding upstream 295272 18724031 ~ 18726062 (-)
G191077 NA non-coding upstream 300080 18728839 ~ 18729268 (-)
LOC103041510 LOC108414096 other downstream 101887 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 203694 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 241060 18167240 ~ 18176164 (-)
G190788 NA other downstream 1197444 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1223477 17181114 ~ 17193747 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 279560 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 468750 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1082562 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2670588 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 3001257 21430016 ~ 21436453 (-)

Expression


Co-expression Network