necap2 (necap2,LOC108414094)


Basic Information

Item Value
gene id necap2
gene name necap2,LOC108414094
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18289441 ~ 18302232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256689.3
TACATTTCCCCTGctgtttccacacacacacacgcatacactaatacacacacttttaacaggtgatttatttttctgtaaaagtgtgaaattagACAGAATGGCAGACGACTCGTATGAATCTATTCTGTGTGTGAAGCCGGAGGTTCATGTGTACAGGATTCCTCCCAGAGCCACGAACCGCGGGTACCGgGCAGCAGACTGGAAGCTGGATGAACCTGCCTGGAGCGGCCGAATGAAAATCACAGCGAAGGCTAAGATTGCGTATATCAAACTTGAGGACAAGAACACAGGTGAGCTGTTTGCACAGGCCCCAGTAGAGCAGTACCCGGGTTCTGTTGTGGAAGCGGTAACGGACTCCAGCCGGTACTTTGTGATCAGGATAGAGGACGGCAATGggCGTCATGCGTTTATTGGAATCGGATTTGCTGATCGCGGAGATTCTTTTGATTTCAACGTTGCGTTACAGGACCATTTCAAGTGGGTAAAGCAGGAGAGTGAGTTTGCTAAGCAGGAGGCCAGTCAGAGTGCAGCTCCTAAACTGGACTTGGGCTTTAAAGAAGGACAAACCATCAAAATTAGCCTGGGGAATATTAAGAAGAAGGAAGCTGCCGGAGCTGCGAAGTCTCGCCCAGGGGCCGGGGGTCTGCTTCCTCCTCCCCCGGGGGCTAAAGGAGGAATCCTCCCTCCTCCGGGCACAATGCCGCCCCACCAAAACCCACCTGCAGCAGCACCGGCCCAATCAAACCCAGGCCTGCTGTTGGATTTGGCCAGACCGGCGGGTCCCACCCAGCCGTCCCAGGACCTTTGGGGGGATTTCACTGCTGCTGGATCAGGcgcTACTCAGGAACCTGTGAAGTCCGGGTGGGTTCAGTTTTAACAGGCTGCTGATTGAAGGGAACCTGTTTAAgggcagaaaacacacacactcgttcTCCAGCAGCACCACACGCCTCTTCTTGCACACGTAGCTGTTGTGTTGGTCTCTGCAGGCCGGCGTATCTGCAGGTCAGATGGGTGTAAAAACATCACTGTTATTACAGCTGAGAAATGTATGCATTCCACTTTTCCTTTCAGAGAGTATTTTtgcctcattttaaagtgttctgTTTTTGGTTAtcgctttttatttttttcttttgctttgttttaagctctttctagatttttttccagatataATGATCATCTCAGTGAGTCCTCTTGCAGATGTCTTTGTgtgaagttgtttttttttggtttgtgtgGTGGGCTTTTGTCATTATTTGAGGAGGTTTTAGGTTACACAGTAGTtctattgttgtttttaattcCTTTGTTTAGGGAGTCATGAAGGATCCTGGGAGAGCAGAATAATTCCCCAGAGAAATCCAGCATGTCTCATCTGACGTTAGCACAGAGATTTTACTCGACACGGAGCCAGAAAGTCCTGATTTTTTTACTCTGAGACTAAGATTAAGTGCTGTTATGTTAGGgtttgaaatgtgttgaaatgatAGTCGAGCTAGTTTGTATTTGCAGTAGCTGCAGCACTGAGAAACTTAAATGGACACAAATGGAACGAAAATACAGTGACTTAAAACTCACTTATAGACCagatcagaaaataaaataacactttttCATATGTGGTTTATTTATACGATACTACAATAACAATCAGTTACTAtcttttttcctcctttcttGAATTAGACCATTAACAATACATTTGTCTGAATACATTTTAGCATTGCCTTCTAAATTACATAAtgataggggtgggcgatatggccctaaaaaaatatcacaatattttatggtattttcataataatgatactcttggcgatatgacaaaacactaaataaaaaaaaatcaagaatacactgcaacaaaattaaaaaaatacattcaattactgtataatgtatgatatggcacacccctaactgagatattaaaaatacaagaattcagatttgtaacagaagtacagaacaatgcactccaaatatctccatatatccaggattaaagtaaatgataataaaaaattaaataaatgatactggacagatataatctgtctctagtagatacataATGGGAAATGACAACAGTgtgaactttttattttgcttaaaacagtaaaaaagtgatgtgataattaggggtgggtgatatggcacgatattaaACTGGAAATTGGGGGTGCTAGTACTTTAAAGAATACAACAGTGTACAaagtaaaaactttattttcatGCAGTCCTTTTTATGTATGCTAAAAGacacaacaaaaataatttaaaaatatttttttgctttcaaAATTCTGCATCTGCCCATTAGATTCTATTATAAGTGAGTTTTGAGTCATTAAGTTTTCTGcttattttaaactttagagaatcgtgttaaataaataatgtaccaCGCTAATCGTCTGTACACCAGAGATACAGCAGATAGAGATACAGTTACTGAaaactggagttctcctttaatacacAGAGtaatttacacaatgtttaaattaagaaaacatgACTAATGCATAAAGACACAGCTAAAGTTCTCTCAGGCTGCTGCTGTTAGAGCTGTTAGTTTGTTTACAGATTATAACACACTTGCTGATTCTCCCCAATACCCATAATCCCTCTATAATAAGATTCAATAAaagtatcttatcttatcttaccttattttacacaaagacacacacagaccactTTCTGATGCTTTTTAGTGTGAGAATTTATTTGTCTTAATagctttttaatttgtaaacgCTTCCTAAGTGCCTTTAATGATGGAATcacatgtataaaatgtaaagcaacacttttattgtaaataaataaaaaaatccttttcCTCTCAGGTGCTGCTA

Function

symbol description
necap2 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human NECAP2 (NECAP endocytosis associated 2).

NR:

description
adaptin ear-binding coat-associated protein 2-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256689.3 True 2876 mRNA 0.39 9 18289441 18302232

Neighbor

gene id symbol gene type direction distance location
crocc LOC108415825 coding downstream 696 18245810 ~ 18288745 (-)
atad3a atad3a,LOC103357928 coding downstream 80745 18194807 ~ 18208696 (-)
LOC103031655 NA coding downstream 139804 18144575 ~ 18149637 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 247938 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 269763 17933593 ~ 18019678 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 98991 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 114992 18417224 ~ 18428759 (-)
nckipsd nckipsd coding upstream 132303 18434535 ~ 18450707 (-)
LOC103038600 LOC108444099 coding upstream 154357 18456589 ~ 18467052 (-)
LOC103029431 LOC108254710,LOC108444098,LOC103385834 coding upstream 181183 18483415 ~ 18488577 (-)
G190988 NA non-coding downstream 41067 18240094 ~ 18248374 (-)
G190958 NA non-coding downstream 59779 18228990 ~ 18229662 (-)
G190949 NA non-coding downstream 71449 18193580 ~ 18217992 (-)
G190983 NA non-coding downstream 74346 18214748 ~ 18215095 (-)
G190982 NA non-coding downstream 98068 18189784 ~ 18191373 (-)
G190990 NA non-coding upstream 8244 18310476 ~ 18360755 (-)
G190997 NA non-coding upstream 59849 18362081 ~ 18367210 (-)
G191003 NA non-coding upstream 75408 18377640 ~ 18378194 (-)
G191025 NA non-coding upstream 200270 18502502 ~ 18505375 (-)
G191078 NA non-coding upstream 369231 18671463 ~ 18675406 (-)
mrpl20 mrpl20 other downstream 75911 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 113277 18167240 ~ 18176164 (-)
G190788 NA other downstream 1069661 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 1095694 17181114 ~ 17193747 (-)
cass4 NA other downstream 1419980 16833850 ~ 16869461 (-)
LOC103041510 LOC108414096 other upstream 9220 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 406087 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 595277 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1209089 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2797115 21099347 ~ 21103218 (-)

Expression


Co-expression Network