LOC103045494 (LOC108415559)


Basic Information

Item Value
gene id LOC103045494
gene name LOC108415559
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17856281 ~ 17880950 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256702.2
AGGCAGCTCTCTCTGGCCCAGGGCTGGTTAAATTCAGAGTCAGAcggagtgtgagagtgtgtgtgtatgagagtgtgttacctgtgtgagtgtgtgtctctcAGTCAGGTGAGATAGTAGATCGTCTTCAGATGATTCTCGGATCTTCTTTAATTCACTGATTGAGATGTTTGGAGAAGTTTAATTGAAGGTTGCAGTAGATGCCAGTTTTAGAGGGTAGAGCTCAGGTAGGCATGGAGAGTGGTGCCCAGTCAGCAGCTTTGGGTCTCCATGCTGGGGGGCAGTGTGCCAGTCCAGCCCCGGCCAAACGACAAGCTGTGAAGAGACACCATCACAAACACAACCTGAAGCACAGGTACGAGTTCCTGGAGACTCTGGGGAAGGGCACCTATGGGAAGGTGAAGAAGGCTGTGGAGAGATCTGGGAGAATGGTGGCCATCAAATCCATCAAGAAGGAGAACATTAAAGATGAGCAGGATCTCACACACAtcaggagagagatagagatcaTGTCCTCTCTGAACCATCCCTACATCGTCTCCATATACGAAGTGTTTGAGAATAAGGATAAGATCGTGATTGTGATGGAGTACGCCAGCAGAGGAGATCTGTTCGACTACATCAGCGAGAGGCAGATCTCCGAGAAAGAAGCCAGACATTTCTTCAGACAGATCGTCTCAGCTGTTCACTACTGCCACCGGAATGGGATCGTCCACCGGGACCTGAAGCTGGAGAACATCCTGCTGGATGAAAACGGAGACATAAAGATTGCTGATTTTGGGTTGTCGAACCTGTACGGGCGTGAGGAGCACCTGCAGACATACTGCGGCAGCCCGCTTTACGCCTCTCCTGAAATCGTAAACGGCCGACCTTACAAAGGTCCTGAGGTGGACAGCTGGTCTCTGGGCGTCCTGCTCTACACTCTGGTCCACAGAGCCATGCCTTTCGACGGACACAACTACAAGACTCTGGTCCATCAGATCAGCACCGGAGACTACCGCAAACCCACCAAACCCTCAGATGCGATTGGCTTGATCCGCTGGATGCTGATGGTGAATCCTGATCGCAGGGCGACTCTGGACGAAATCGCTGGACACTGGTGGCTCAACTGGGGCTACCAGCGCCCGCTGCTGGCTGAGAGTGAAGCTACAGCTACGTcaacagcaccagcaccagccgGAGCGCTGCAGGCATCAGGAATGGGAACAGGAACGGGAGCAGCACCCCATTCAGCAGGCTCTACACGCATCGCCGACTGGCTGAGGAGGACCACTCGACCTCTGCTGCATAGCAATTCTAAGATGCGCTGCCTGCTGCGGCCAGGAGGAAGCAGCACCGGGGGAGAAGTGACTGTGACGAGACAACGCTCGATCCGCAGGTCACGCAAAGAAAATAACGTCTCCCAGAGCATGCAGGAGAACAGCGCCCCTCGGCCGTTCAAAGGCATCCTGAAAAAACGCGGCAGCCTAAAGCAGAAGGCGGTCAACGAAGCACAAGTTCCTCCCCTTGAAGATAAAACGACAAATGCTAATATGGCCCCTCCCACTGCTCTGCctccagccccgccccctcgtaaAGGCATTCTGAAGAAaccgacagagagagagtcgGGGTATTATTCCTCGTCTCCAGACAGCAGCGACTCTGCCCAAACTCCTCAAAGTCCACTTTGCCCGTCGATGCCACCTCGGCGAAAAGGCATTCTGAAACGCCACGGCAAGTTCTCCTCTGGTGGCCTACAAGAATTTGGATCCTTGGACCAGCTTGCGGCCTCCCTGCCACCGGGGATCAGCAGATCAAGGCCTAAAGGTGCCATCAGCGAGGACAGCATCCTATCGTCTGAATCGTTCGATCGGTTAGACCTTCCAGACCGTCACGATCCAGTTGCGACAGTGGAGCCTCCAACAGGAGGCAGCAGAATCATGCGTGGCAGCGTTTCGGCTGACAACCTCTTGGACATGAGCGAGAACAGGCTGTCTGGTCCACGTCAGGGTTACTGGGATATGGACATAGCCGCTATCAGGCGAGGGTCGGGAGATAGCACCTTCTCCTTCACGGACTGCACATAAAAGGAAATGTGACCGAACAGTCTACTAGCATTAACTTTTAGCATGTAAAGAGCATGCACGAGCTAAGAGATGCACATCGGGACTGGGATCGTTTGTTTTTCAGGTTGTGTGCTCTTATTTTTGCATGGGAACAGTGTCATGAATGAAAGAAGCAGTAGTCTAGCCAATaaggctttttttatttatattacacaaTGTCTACTTGAAGAAAGGTGGTAGCCTAAAAAAAAGTGGTGACGCCAAAAAGAGCTAGTTAGCAAAGGGAATAGCATTGGTGGTTAGTCTGGTAAACACTAGAATATTAAGAGTTAGGGCCCTAGCAGCAATCGATCTGCTCTGGTCTTTTCATAATAAGCATTTCATGATGTTTTCTCATAGATCTCGAAGATTTAAACACTTGATGAACTTGATGACCATTGAGACTGCAGTATCTCTAAACGTGAAAgttgcaccttttttttttttcttcgatATTTTGAGGAGCAAAGCAGAACCAAAGATGCTCTACTTGAACGTTTAGCAATAGAAACCAGACTGCTGAGGGAAGAGGATACAAAGTCCAGTTCCAGGGAAAGCAGCGAATGGCGGATTACAAACACAGAACTCAAAGGTCCACAGATCAAACGGTTCATCGGTGATAAGGTGTTGACAGTTTCTGTATTAGACGAAAAGTCCAGTAACCTGGTCAACGTTTAACTTTTACTACTTTTATGTTTGTGGCCTAGATCTCAGATGACATGCCAGACAGAGTTTTATGcggttttattgctttattttatgaaatttgTCTTGGTTACCCAATAAGGCtggatgaatagatgaatggatggatataaACAGTCTGCATGGATGGGAATATGAAGCAAACATTGTTTCTGttgctaaaaagaaaaaatgaattgATATTTTGGTCACTTTGTTCAATTTGGATCAGTTTGTTCAGAAAGGATTTaaattgtacaaaaaataaCTTCAAACAGATTTGTGGCAGGGTGTGTAAATGTGGTATGCATGTTCTGTAATGAGGGAATTTTACATAGAAAATCTTTTAAAAGCTGCACTGTATAATTCATTACACTGGAAAAATGTTCTGATGGAGCATTTTTAATGTTGTTAATGCTATTATTTCATCATATGCTTGGCTTGGCGCAAAATCAGGTCTTGGCTAAAGTCCATCCAAAAATGtgatcagtattttttttttatatatatatataatttatacatgGAAATTTAACATGTTACGCAGTTCTGCTCAACCTCATACCATGTTTCTTTGCCAAAGTGCCTGACTGATCTGTAGCGCCTCACTGTGGCCATCTCCACTGAATGCTGAAATCGGCTCAGtggatcaataaaaaaaaacaacctttcAAACAAGA

Function

NR:

description
PREDICTED: NUAK family SNF1-like kinase 2

GO: NA

KEGG:

id description
K08800 NUAK; NUAK family, SNF1-like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256702.2 True 3451 mRNA 0.47 7 17856281 17880950

Neighbor

gene id symbol gene type direction distance location
med20 med20 coding downstream 18941 17830616 ~ 17837340 (-)
LOC103032918 usp49 coding downstream 26709 17815209 ~ 17829572 (-)
elf3 elf3,ehf,LOC105900760 coding downstream 130028 17717899 ~ 17726253 (-)
LOC103021559 LOC108415296 coding downstream 184008 17665117 ~ 17672273 (-)
c22h6orf89 cunh6orf89 coding downstream 228882 17621467 ~ 17627399 (-)
LOC103032297 celsr2 coding upstream 52643 17933593 ~ 18019678 (-)
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding upstream 141508 18022458 ~ 18041503 (-)
LOC103031655 NA coding upstream 263625 18144575 ~ 18149637 (-)
atad3a atad3a,LOC103357928 coding upstream 313857 18194807 ~ 18208696 (-)
crocc LOC108415825 coding upstream 364860 18245810 ~ 18288745 (-)
G190908 bysl,LOC107572361,LOC107723053,LOC107569751 non-coding downstream 8964 17841514 ~ 17847317 (-)
G190896 srsf3,srsf3b,LOC107569752,LOC107690536,LOC108413700 non-coding downstream 91484 17755943 ~ 17764797 (-)
G190891 LOC108412444 non-coding downstream 109548 17738514 ~ 17746733 (-)
G190889 NA non-coding downstream 139449 17691046 ~ 17716832 (-)
G190887 NA non-coding downstream 154439 17664014 ~ 17701842 (-)
G190924 NA non-coding upstream 32423 17913373 ~ 17914407 (-)
G190927 NA non-coding upstream 42733 17923683 ~ 17928468 (-)
G190917 NA non-coding upstream 49206 17930156 ~ 17938150 (-)
G190931 NA non-coding upstream 68798 17949748 ~ 18008864 (-)
G190933 NA non-coding upstream 93581 17974531 ~ 18071642 (-)
G190788 NA other downstream 636501 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 662534 17181114 ~ 17193747 (-)
cass4 NA other downstream 986820 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1256964 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1395353 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 258413 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 286290 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 430502 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 827369 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1016559 18897509 ~ 18902285 (-)

Expression


Co-expression Network