LOC103031655


Basic Information

Item Value
gene id LOC103031655
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18144575 ~ 18149637 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256743.2
GTTAGTAGATCAGAggctgcaacacacacacacacacacacacacacatacaagatGGACAGAAATATGGACAGAAGAATAACAGGATAAAGGATAAGGAATAATGGAGCTTCTGACTATAGAGGCCATTCTGTTCGGCTTTCTGGTCTTCTCTGGCATTCTGGGAAATATGTTGGTCATCTACgcgGTGTTCCAGTGTGCTCTGGACAACCCGTCTCACCACCTCTCCCCGTCTGACATCATCCTGCTGAACATCTCCATGGCCAACCTCCTGACCTCCGTGTTCCGCACCATACCCATCTTCATCTCCGACCTGGGCCTGAAGGTGTCGCTGGAGACCAACTGGTGTCGCGTCTTCATGCTGCTGTGGGTGTGGTGGCGGGCGGTGGGCTGCTGGGCCACGCTGACGCTCAGCGCCTTCCACTACGCCACCCTGAAGCGTAAACGCGTCTCCACGTGCCCTCAAGCGCTGAGGAAAGACCGCAGGCTCACGTGGGGAGCTCTGGGGCTGGTGTGGGGCACCAATTTACTGTTTTCGATACCGGCGTCGGTCTTCACGTCGCACGTGCACGGAAACGCCACCACTGAAGTGATGGTGATTAGCTGCACCACGCGGCCCCTGCTGGGCTGCATGTGGAATTTCCCGACCCGTGAACAAGGCTACGCCTTCGCCGCCGCTTCGATGGCGCTGAACGAGGTTCTACCCCTGGTTCTAATGGTGGGAAccaacctggcaaccctgcacACTCTGGCCAAGCACATCCGCGCCGTCGCCGCCGGGCCCGAGATGGCGTCGGGTCATTCGAACAGCGAAAAGAAGGCGGGTCACGTGATCCTGGCCTTGGTCACCCTGTTCGTGGTCTGCTGGGTGTTACAGGTTGCCGCGGTGACGTACTATAACTACGAGCGTGGAAAACACACCGACAGCCTGCTGACCGTCTCCCAGTTCTCGTCCTCGCTGTTCGTGGGCTTCAGCCCCATGGTGGTGGCTCTGGGACACGGCAAGATGCGCAAGAAAATCATGGGCATGCTGCAGAGGTGGCTGCGGAAAGCTCTGTGCAGAGACGCCGAGGAGCACAAGAGGGCGCCGGAGATCAGCTCCACCATAAACAGCACCATcacacagaaacagacacaTCACTGACATTATAGCAATGTGAACACAACTTAATAACTGTTACAGGAACTCCAAGACGTCAAAACCAGTCTCCTCATTTATAACGATgaaccatatttttcgcactataaggcgcaacggattataaggtgcacactatgtgacactagtaaggaacaggggtgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256743.2 True 1304 mRNA 0.56 2 18144575 18149637

Neighbor

gene id symbol gene type direction distance location
capzb capzb,LOC105897928,LOC106565651,LOC106583096 coding downstream 103072 18022458 ~ 18041503 (-)
LOC103032297 celsr2 coding downstream 124897 17933593 ~ 18019678 (-)
LOC103045494 LOC108415559 coding downstream 263625 17856281 ~ 17880950 (-)
med20 med20 coding downstream 307235 17830616 ~ 17837340 (-)
LOC103032918 usp49 coding downstream 315003 17815209 ~ 17829572 (-)
atad3a atad3a,LOC103357928 coding upstream 45170 18194807 ~ 18208696 (-)
crocc LOC108415825 coding upstream 96173 18245810 ~ 18288745 (-)
necap2 necap2,LOC108414094 coding upstream 139804 18289441 ~ 18302232 (-)
LOC103030071 LOC107395124,LOC106516167,LOC105904852,LOC108254707,LOC107679546,LOC107711958,LOC107591783 coding upstream 251586 18401223 ~ 18413418 (-)
slc25a20 slc25a20 coding upstream 267587 18417224 ~ 18428759 (-)
G190933 NA non-coding downstream 72933 17974531 ~ 18071642 (-)
G190931 NA non-coding downstream 135711 17949748 ~ 18008864 (-)
G190936 NA non-coding downstream 149215 17994680 ~ 17995360 (-)
G190917 NA non-coding downstream 206425 17930156 ~ 17938150 (-)
G190927 NA non-coding downstream 216107 17923683 ~ 17928468 (-)
G190982 NA non-coding upstream 40147 18189784 ~ 18191373 (-)
G190949 NA non-coding upstream 43943 18193580 ~ 18217992 (-)
G190983 NA non-coding upstream 65111 18214748 ~ 18215095 (-)
G190958 NA non-coding upstream 79353 18228990 ~ 18229662 (-)
G190988 NA non-coding upstream 90457 18240094 ~ 18248374 (-)
G190788 NA other downstream 924795 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 950828 17181114 ~ 17193747 (-)
cass4 NA other downstream 1275114 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 1545258 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 1683647 16345701 ~ 16460928 (-)
LOC111195395 NA other upstream 17603 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 161815 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 558682 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 747872 18897509 ~ 18902285 (-)
LOC103036492 card19,LOC108443695 other upstream 1361684 19511321 ~ 19528580 (-)

Expression


Co-expression Network