cse1l (cse1l,LOC107750990,LOC107699361)


Basic Information

Item Value
gene id cse1l
gene name cse1l,LOC107750990,LOC107699361
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29280150 ~ 29291603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256856.3
ATGCGCGACGTCGTGACCGCGCAGTTGTTTGAGACGTTTGAAAGCGGGTGAAGTTCCCGATCATCACATCTGTCCGCCGGTCATTACAGCACTTCAGCAGCGCGCTCGCTACAATGGAGCTAAACGATGCTAACCTCCAAACTCTGACGgagtatttgcagaaaacactAAACCCAGATCCACTCGTCAGGCGCCCAGCTGAGAAGTTTCTAGAGTCAGTAGAAGGGAATCAGAACTATGCGCTGTTGCTATTGACAACACTAGAGAAGTCCCAGGATGAGGTTATCCGTGTGTGTGCTGCAGTCACCTTCAAGAACTACATCAAGAGGAACTGGCGTATAgttgaagATGAACCCAACAAAATATCAGACCCTGATCGAACAGCTATCAAAGCtaacattgtaaatttgatgcTTACCAGCCCtgagcaaatacagaaacagCTAAGTGATGCAATCAGCATCATCGGACGAGAAGACTTCCCACAGAAATGGCCTGACCTCCTGACTGAGATGGTGAACCGCTTTCAGGGTGGAGACTTCCACATCATTAATGGGGTTCTTCGCACTGCTCACTCACTTTTTAAAAGATATCGTCATGAGTTCAAGTCCAACGAACTGTGGATGGAGATCAAGCTGGTGCTGGACACTTTTGCTCAGCCCCTTACTGAGCTGTTTAAGGCCACAATTGATCTGTGTCAGACTCATGCTACGGATGTCAATGCTTTGAAGGTCCTCTTCTCCTCCCTCACACTCATATCAAAGCTGTTCTACAGTCTCAATTTCCAGGATCTTCCTGAGTTCTTTGAGGACAACATGGAGACGTGGATGACTCATTTCCACAATTTGTTAACTTTGGATAACAAACTTTTACAAACTGATGATGAAGAAGAAGCTGGTCTCCTGGAGCTGCTGAAATCACAGATTTGTGACAATGCTGCACTGTATGCACAGAAATATGACGAGGAATTTCAGCCTTACCTGCCTCGCTTTGTTACAGCCATCTGGAATCTGCTGGTTACAACAGGACAGGAGGTCAAATATGATCTGCTTGTTAGCAATGCAATTCAGTTCCTGGCATCAGTGTGTGAAAGGCCGCACTACAAGCATCTGTTTGAAGACCAGAATACACTCACCAGCATCTGTGAAAAGGTCATCGTTCCTAACATGGAGTTCAGAAGTGCAGATGAAGAAGCATTTGAGGATAATTCAGAAGAGTACATTATAAGGGACCTTGAAGGCTCagACATCGACACAAGGCGGCGAGCTGCCTGTGATCTGGTGCGAGGCCTGTGCAAGTTTTTTGAGGGACCTGTGACTGCTATCTTTTCCGGTTATGTCAACTCCATGCTGACAGAGTATGCCAAGAACCCTTCAGTGAACTGGAAACACAAAGATGCAGCCATTTATCTGGTCACATCGCTGGCCTCTAAGGCCCAGACACAAAAGCATGGAATCACACAAGCCAATGAGTTGGTGAACCTGTCAGAGTTCTTTGTGAACCACATTTTGCCAGATCTGAGGTCTCCAAATGTAAATGAATTTCCAGTCTTGAAGTCAGATGCCATCAAGTATGTGATGACCTTCAGAAGTCagCTTCCTAAGGAGCAGCTGTTGGAGACCGTGCCTCTGCTGGTAGCTCACCTACGGGCTGAGAGCACAGTGCAGCACACCTATGCTGCTCACGCCCTAGAGCGCCTCTTCACAATGAGGGGACCCAACAACTCCACACTtatctCCGCTGCTGAGATGGCACCATTTACAGAGCAGCTCCTCAACAACCTGTTTAATGCCCTGGCGATACTTGGGTCCTCTGAGAATGAATACATCATGAAAGccaTCATGCGAAGCTTTTCCCTCCTACAAGAAGCAATTGTGCCCTACATTCCTACCTTGATTGGCCAGCTTACTCATAAACTCCTCCAAGTCAGCAAGAATCCCAGCAAACCCCATTTCAACCACTACCTGTTTGAGTCCCTGTGCCTGTCCATCCGGATCACATGCAAAGCAAACCCAGTCAGTGTGAGCAGTTTTGAGGAGGCCCTTTTCCCTGTCTTCACAGAGATTCTCCAGAGTGACGTGCAGGAGTTTGTTCCGTACGTGTTCCAGGTGATGTCTCTGCTGTTGGAGATCCACACTAACAACATCCCCTCCTCCTACATGGCCCTCTTCCCTCACCTGCTTCAGCCAGTTTTGTGGGAACGCACAGGCAACATCCCCCCTCTGGTCCGGCTGCTGCAGGCATACCTGGAGAAGGGTGGCGCCACCATTGCCAGCTCTGCTGCAGATAAAATTCCTGGTCTGCTTGGAGTGTTCCAGAAGCTCATCGCCTCCAAAGCCAATGACCATCAGGGCTTCTACCTGCTAAACAGCATAGTGGAGCACATGCCACCGGAGTCGATTACTCAGTATAGGAAGCAGATATTCATCCTGCTTTTCCAGAGACTCCAGAGCTCAAAGACCACCAAGTTTCTCAAGAGTTTCATGGTCTTCATTAACCTGTACTGTGTGAAATATGGGGCAATTGCTTTGCAGGAGATATTTGATGACATCCAGCCAAAAATGTTTGGTATGGTGTTGGAAAAGATCGTGATTCCAGAGGTGCAGAAAGTATCTGGGCAAGTGGAAAAGAAGATCTGTGCTGTGGGCATCACGAAGATCCTGACTGAGTGCCCAGCTATGATGGACACCGAATACACCAAGCTCTGGCCTCTCGTGCTCCAGGCTCTGATCGGTTTGTTCGAGTTGCCGGAGGACGACAGTATTCCAGATGATGAGCATTTCATTGACATTGAGGACACACCAGGGTACCAGACAGCATTCTCTCAACTGGCCTTTGCTGGAAAGAAGGAACATGATCCAATTGGAGATGCTGTCAGCAATCCCAAAATCCTGCTGGCTCAGTCGTTACATAAACTGTCCACAGCTTGCCCTGGCAGGGTTCCCTCAATGCTGAGTACAAGTTTGAACACTGAGGCGCTCCAGTTCCTGCAGGGTTATCTCCAGGCAGCTTCGGTCCAGCTGGTTTAAAGAGGACGCTGGCTTTCTCCACGCTTTGTTCCTAAAGTCTGTCAACGCACCGCAGGGGGAAGACGACGAGTCACTGTCGAGATTGGGACTGACGTAACTGGACTACACGAACCGACAGACGGACCAGTCGACTtgacatctcacacacacaagcaacaGCAGGGTTGCCCAAAATTGTGCCGTCATCTGCAAGAGGCTATTTTTAACAgttgtaaaaagacaaaatggaAGTATGCTGGCACAGTTAGTTAAGGTTGAGTCGATGCTGCTTCAGCACTTGAGAATATTCGATATAGAGCTTTATTCTGACTCCTTCAGTTTACCGGTCCGCTGGCATTTAAAATCTGGGACAACAACATGTCCATAACATacataaacagtatttttttgaaAAGATAATGACTAAAAGAGACTTTGACGAACATTTGACCATACAAGTTGGATGACATTTGATGTCTTTGCAAAACAGGGggagtgtgtttttctgtagtTTCTGAAATTGATTTTACTGTACAAAAATAAGGGCTGTCATTGTGGCACTAAAAACAAAGCTCTTACCCCTCCCACCACCCTATTGTTCTccttattttcttcttcttttctttgttgcatgtgtttattgttttgtctTTGTCTGGTCTTAGTTTTAAGGCTTTGTCTACTTGTTAATAAAGAGATGCACTTGTAa

Function

symbol description
cse1l Predicted to enable nuclear export signal receptor activity. Acts upstream of or within body fluid secretion. Predicted to be located in several cellular components, including apical plasma membrane; basal plasma membrane; and lateral plasma membrane. Predicted to be active in cytosol and nuclear envelope. Is expressed in brain; digestive system; endoderm; and retina. Orthologous to human CSE1L (chromosome segregation 1 like).

NR:

description
PREDICTED: exportin-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007589 body fluid secretion biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256856.3 True 3717 mRNA 0.47 25 29280150 29291603

Neighbor

gene id symbol gene type direction distance location
LOC103040276 NA coding downstream 1586 29269921 ~ 29278564 (-)
LOC103042113 LOC103042113,LOC108435091 coding downstream 25321 29233512 ~ 29254829 (-)
LOC103040895 LOC108436021 coding downstream 61142 29177346 ~ 29219008 (-)
LOC103042433 taf4,LOC108436032 coding downstream 106655 29151721 ~ 29173495 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 709208 28546579 ~ 28570942 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding upstream 10931 29302534 ~ 29759625 (-)
LOC103043315 NA coding upstream 1427373 30718976 ~ 30720245 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding upstream 1437632 30729235 ~ 30802508 (-)
gnl3 NA coding upstream 1555694 30847297 ~ 30856549 (-)
sfmbt1 sfmbt1 coding upstream 1904219 31195822 ~ 31230829 (-)
G193642 NA non-coding downstream 13761 29263974 ~ 29266389 (-)
LOC111195426 NA non-coding downstream 47183 29227704 ~ 29232967 (-)
G193638 NA non-coding downstream 103285 29176455 ~ 29176865 (-)
G193637 NA non-coding downstream 104026 29175914 ~ 29176124 (-)
G193568 NA non-coding downstream 349229 28875917 ~ 28930921 (-)
G193649 NA non-coding upstream 5198 29296801 ~ 29297084 (-)
G193652 NA non-coding upstream 88144 29379747 ~ 29380489 (-)
G193662 NA non-coding upstream 292849 29584452 ~ 29584846 (-)
G193678 NA non-coding upstream 440969 29732572 ~ 29733272 (-)
G193723 NA non-coding upstream 512879 29804482 ~ 29805915 (-)
G193541 NA other downstream 681512 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 693928 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 1067080 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1264538 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1578819 27425042 ~ 27701331 (-)
G193737 NA other upstream 874158 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1518191 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1878695 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1883204 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2159200 31450803 ~ 31654210 (-)

Expression


Co-expression Network