LOC103047010 (syt6,LOC107727826,LOC107560238,LOC107655078)


Basic Information

Item Value
gene id LOC103047010
gene name syt6,LOC107727826,LOC107560238,LOC107655078
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23208885 ~ 23282019 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601696.2
TCCCGGCCCTCCGCGGTGAAGAGCGACGGCGGGCGTCCGAGGCTTGAACGATGCGAGTCGCTGCCCCTCCTGAGGAGCCCGACGTGTTCTGTGAGAAGGCTGTGGCCCTCATTGTTGACCTCTGCCTGGACGACAGCCCTCTGCTGGACGCCGACACATGCCAGGACTTCCTAGTGCTGCTGACCAACCCTAGCCATGACCTCTCCAGCTCAGACATTTCTTTTAGTGTCCTGCTCTTGGTGTTTGTGCTGGGCGGCCTGGCCctgctgggtgtcatcagcctCGCCACCTGGAAGCTGTGCTGGGTGCCCTGGCGCAGCGAAGCCCTCTCGTCCAGCGCCACCGCCCTCACCCCCGCCCGCCCCGACCGTGAGCTGAGCAGCGACGTTGACCGAGACTATTACTCAACCCAGGCAGACATCATGGCGGCAGACAAGCTGAAGGATCCCGAAAACTTCCTGGAGGCCGCGGTGAAAATCAGTCACACGTCTCCAGACATCCCGGCAGATGTCCAGCTTTCCATGAAGGACCACCTGCTGAGACGGACGCGCATATCCCGACAGACCACCGAGCCCGCCTCCTCCAACAGGCACAGTTCTTTCAAGAAGCATCTACCCAGGCAGATGCACCATGTGACCAGTGTGGACCGAGGGAGCGATTTCCTGGATGTGGACGACCACCCCACCTGCACCGCCGCCGCTCTCGGACGAATACAGCCTGAACTGTACAAACAAAGCACGCAGGAGGCTGAGGAATCGTCCAAGAACGAAACGGCCTGCGGCAAAATCAACTTCTCACTCAAGTACGATTACGAGGGCGAACAGCTTCTCGTCACCATCCTCAAGGCTCTGGACCTGCCTGCCAAGGACTTATGCGGCAGCTCGGACCCCTACGTCAAGATCTACCTGCTGCCAGACCGCAAATGCAAGTTCCAGACCCGCGTGCACCGCAAGACCCTCAACCCCACGTTTGATGAAATGTTCCAGTTCCCCGTTCCCTACGAGCAGCTCCCGGCCAGGAAGCTGCACCTCAGCGTCTTCGACTTCGATCGCTTCTCACGGCACGACATGATTGGCGAGGTGATACTGGATAACCTGTTTGAATCGTCCGACCTCTCACGGGAGACATCCATCTGGAGAGACATTCAGTACGCCACCAGTGAAAGTGTGGACCTGGGGGAGATCATGTTCTCGCTCTGCTACCTCCCCACTGCGGGACGCCTCACCATGACGGTCATCAAATGCAGGAATCTCAAAGCCATGGACATCACGGGTTACTCAGATCCGTACGTGAAAGTGTCGCTGATCTGCGATGGAAAACGgctgaagaaaaagaagacgACGATAAAGAAGAACACCCTGAACCCCACCTACAACGAAGCCATCATCTTCGACATTCCTCCAGAAAACATGGAGCAAGTCAGCTTACACATATCCGTCATGGATTACGATCTAGTGGGACACAATGAGGTCATAGGTGTGAATCGTGTGGGCAGTCATGCCGAGGGGCTTGGAAGAGACCACTGGAACGAGATGCTGGCTTACCCGCGGAAACCCATCGCTCACTGGCACCCTCTCCTAGAGCCAAAGAAGTCTGAAAAAGAGTGGAAGACCCGCACAGCAAGTTTCGACAGTCAGGGGTCCTGTCCGTCCCCTCGACTCCCCTCCAGCCCGTAGGGGGCGGGGCCTGAAGCACACGCCTCTCTCTAAGGCTTCTCAAAAGCCAAAAAGATCTACCAGGAGCTGTGGTAAGATTCACACATCCTGAGACGACCTGGCACAACGTCTGTCTGTGTGGACACTGGCATAAGGTACAGACGGACAGAAGGCGGAGTCAAATCCTATTGTGTGTTTGAGCCTAGACAAGCTTCTAATGGGAGGGGgggattatttatatatttatttcattattgatgtatttattttttatttatgtcaatTCCTTCCCCATTTGTCATATTCATGAGCAAGTCCAGAGGGTTATGCTAATAACCATGGATTTCATTGCTCTAAAAaggcaattaataataaaaatatttatgtattaaattaCAGTGTTACTTATGTTTGCCATGGTAGTGTAAAGATATagatcataaaaaaacagtgttttcttCTGATTGGTTTAGGAATttctatgtttttgtttgtttgtttatttgtttatagacTGGCTTATAGAGGAcagtatatatagaatatactCTGAGATGCACATTCAAGTTAGTTTGAACTAATTCAGGAACCATCTTCTGCGCTGTTGTGATCCTGTTTGCCACCCAGCAGGGTTTAAAGCTAAATGCCAAGAGATGAAAAACTATATTGCTTAAATAGTTCCTGAATGGctgtttacaaataaacaataatctgaattatattgatttactgtgtttaaaagcctTTCAGAATAATGTAGCTTTcttgtgaaatttcctcacaaTTCTCAAAaatattcttta

Function

symbol description
syt6 Enables clathrin binding activity and syntaxin binding activity. Involved in acrosomal vesicle exocytosis. Predicted to be located in cytosol and perinuclear endoplasmic reticulum. Predicted to be extrinsic component of membrane and integral component of membrane. Predicted to be active in exocytic vesicle; glutamatergic synapse; and plasma membrane. Predicted to be integral component of synaptic membrane.

NR:

description
PREDICTED: synaptotagmin-6-like isoform X1

GO: NA

KEGG:

id description
K19906 SYT6; synaptotagmin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601696.2 True 2458 mRNA 0.51 7 23208885 23282019

Neighbor

gene id symbol gene type direction distance location
LOC103045076 gpr25 coding downstream 46466 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 64477 23104254 ~ 23144408 (-)
rnpep rnpep coding downstream 110321 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 126757 23074119 ~ 23082128 (-)
LOC103044418 adipor1 coding downstream 136683 23063167 ~ 23072202 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 327234 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 342891 23624910 ~ 23635826 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding upstream 366247 23648266 ~ 23660292 (-)
LOC103042306 NA coding upstream 391089 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 400190 23682209 ~ 23696247 (-)
G192293 NA non-coding downstream 53843 23154582 ~ 23155042 (-)
G192288 NA non-coding downstream 103258 23105108 ~ 23105627 (-)
LOC111195460 NA non-coding downstream 107897 23098838 ~ 23100988 (-)
G192240 NA non-coding downstream 177815 23030652 ~ 23031070 (-)
G192232 NA non-coding downstream 246076 22961247 ~ 22962809 (-)
G192365 NA non-coding upstream 47055 23329074 ~ 23329313 (-)
G192428 NA non-coding upstream 262516 23544535 ~ 23559176 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding upstream 320300 23602319 ~ 23607031 (-)
G192484 NA non-coding upstream 594616 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 710177 23992196 ~ 24049734 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 150080 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 405243 22786163 ~ 22803642 (-)
amhr2 NA other downstream 485980 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 846427 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1357243 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 757227 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1929656 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2592891 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3429234 26711253 ~ 26724106 (-)
G193097 NA other upstream 3749644 27031663 ~ 27033089 (-)

Expression


Co-expression Network