LOC103046266 (chd5,LOC107555845,LOC107691315)


Basic Information

Item Value
gene id LOC103046266
gene name chd5,LOC107555845,LOC107691315
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 8346072 ~ 8431062 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601976.2
ttccatcctatctttttttgtttctttctctcctgtctgtttctctctctctctctccctctctctgtctttgtgtcGGGCTGCGCTGCCTCGTCACCTTGACAACGGCGCTCGTGACTCTCCGGTGGTCCTGAACGCGCGAGCCTATTGCATCGAGCGCTAACCGGCTCTTTAATTGGCCGCGTTCTGCATCTGTTGCACGATCTAGACGGAGATCACTCCTCAACCCAACCCccctgaattaaaaaaaaaattacagcgcGAGAGCCTTCctttacttttaaataagaGCATCCTCGCGCCACTTATACCCACCTGTAAACCAACCACAACACAggctcgcacacacacacactcacgcgcGCGCACGCGACGGCCCTCTCTCTGTCCCGGTCTGTGCGTGGCGTGTTGGTCGATCGTGCAGGGGGGGAAAAACCAAACCTGGCGCGTGTGATGCAAACAAAGACGAGCACAGTTTCCCCCACCCCTCTCTTGCGCTCGTGCGGTGGGTCGGTCGGTCTGGATGTTGATCCAGAGATGATGTTGCTCGCCGTACACGGCAACGGACAGAAAGCACGCGACAGCACTCGAAACAACTTTCGTCCACGTTTTCCCCTCAACCCCACGTAAGCCTCAGAATGCACGAGCTCGGCGCTGTGAGCGTGtttgtgtgagcagtgtgtgcgCGAGCAATGTGGTTGTGCGCGTGCGTGCATGTACTAGTCCAACTGGTAACTAAGGGGGAAAGCACTACTAACTAGTCGTGCCCCATCATCATTATGGGATGGATCGCCATGGCAACCGACCAGACGTCACAAGCTGGGCATGTGTGTTCCATTTTTGGCTCTTTCTTATTTTCAGAGCGGAGGATTTGGATGGAGGAGGGAATGGAGAGATTTTTTGGGGCGGCTTCCATGTAGGGCAGCCAtatttccctttttctttttttcctcttttccatcttcttcttctctttaatTTTTGGGGGTGCCAAGTGTTTTCTCAAGCCCCTCACCTTCGCTGGACGtcctttcttcctcttcttcactGAAAGGCGTTGTTGCATTGCTGAAAGgctgcctctgctgctgctctgaagGGGTTAAGTTTCCACGACTTTAGTGAGCTCTAGCttggatgtgatttttttttcctcccccccccccctccttttttttctctgggtAATGCAGTAAAGATGCCCGGATCGCTGAGCAATGAAGAAGAGGGGCAAGACGATCTGGATTTTGAAGACGACATAGCAGATGAGGATGAAGAAGATGAGCGGGACAATGTGCCGCTGTCACCCCTCGAACGCTTCTTTTCTGACAACGATTCGGtcaaacagaagaagaagaagcccaGCAAGCTGAAAGAGGGCAAGATGCCGAaagtaaagaagaagaaaaaagagATTCCGAGTGTTGGTGAGCGTGAGGACATGTCAGAAAGGGATGACCATGGACATCGGTCAGGAAGTGAGAGTAGCAGTTACGGCAcactgaagaaaaagaagaagaagcccaaagagaaaaaagagaagaaagccaaatggaaaaagaaagatgatgatgatgaagatgacgatgatgatgatggaaatATGAAGGAGCCCAAGTCTTCGAGCCAGCTGATGGAAGAATGGGGTCTGGAGGATGTGCAGTATGCTTTCTCTGAAGACGATTACAAAACCATTACTAACTACAAGGCTTTTAGCCAGTTTCTCAGGCCCCTCATTGCCAAGAAGAACCCTAAAATTCCCATGTCCAAGATGATGACAGTGTTAGGAGCCAAGTGGCGGGAGTTCAGCGCCAATAACCCATTCAAAGGCTCTTCTGCCACGGCCGTGGCTGCTGCTGTGGCTGCAGCCGTGGAAACAGTCAATGTGGCCCCGCCCATCTCTCTTAGCAGTATCCAGCAACTTTCTCCAACGGGGCCAATCAAAAAAGCCAAAACCAAAGAGGGGAAGGGGCCCGGTGCTAGGAAGAAAAGTAAACCAGTAAAAGACACGAAAAAGAAAGTGAAACCCAAGAAGCCCAAATCAAAGGCAGGCCAGAGCGGCAAAAGGAAAAAAGCCTCTTCGAGCGAGGAGGATTTCTTAGACGACTTCTCAGACTTTGATGATGTCAGCATACACAGTGCCTCTGTTCGCGCCGACGCCTCGGGTGCACCCAAGAAAAAACCCCGCCGAGGACGCAAAAAGCGGAAAAGAGAGGATGGAGACGGATACGAGACGGATCATCAGGATTACTGTGAGGTGTGTCAGCAGGGAGGAGAGATTATTCTGTGTGACACCTGCCCCAGAGCCTATCACCTGGTGTGTCTCGACCCGGAGCTGGAGAAAGCTCCCGAGGGGAAGTGGAGCTGCCCCCACTGCGAGAAGGAGGGCATTCAGTGGGAGGCCAAAGAcgatgatgaagaggaggaggaggctggTGGTGAAGAAGAGGACGACCACATGGAGTTCTGTCGAGTGTGTAAGGATGGAGGGGAGCTGCTGTGCTGTGATACGTGTCCGTCCTCCTATCACATCCACTGCCTCAACCCACCCCTGCCTGAAATACCCAACGGAGAATGGCTATGCCCACGATGTATGTGCCCCCCACTTAAAGGGAAAGTTCAGAGGATTCTGCACTGGATGTGGGGGGATCCCCCACTACCCCCTGAAGCTCCTCCGACCCAGGATGGAGAGAAAACAGATATTCTAGCAAAACCTCCACTCAAGGGCCGGCCGGAGAGACTGCTGTTTGTTAAGTGGGCTGGACTGTCGTACTGGCACTGTTCATGGGTCAACGAGTTACAGCTGGAGCTGTACCACACGGTCATGTACCGGAACTACCAGCGGAAGAATGACATGGATGAACCTCCGCCATACGATTACGGCTCTGGAGAGGAGGAGCTcaataatgaaaaaaggaaGAGTAAAGACCCAGAGTATGCTGCCATGGAGGAGCGGTTCTACCGCTACGGCATCAAACCTGAGTGGATGATCATCCATCGGATACTCAACCACAGTTTTGATAAGGATGGAGATGTTCATTACTTGATCAAATGGAGGGACCTGCCATATGACCAGTGCACTTGGGAGGTAGACGACTTTGATGTCCCAGAATACGAGCCCTTTAAACAGGCCTATTGGGACCACAGAGAGCAGATGCTTGGCGAGGACCTTCGCCCCCTTGTGgtgagaaaaggaaagagaccAAAAGAGGAAGTGAAGAGGAAAGAGGCTCCACCTGAGACTCCAGTTGTTGATCCTACAATCAAGTTCGATCAGCAGCCTTGGTACATCAATGCCACGGGAGGAACGCTGCACCCGTACCAGCTGGAGGGCCTGAACTGGCTGCGTTTCTCCTGGGCTCAGGGCACAGACACCATCCTGGCTGATGAGATGGGACTGGGCAAGACCGTCCAGACTATAGTATTTCTGTACTCACTCTACAAAGAGGGTCATTCCAAAGGGCCTTTCCTGGTCAGCGCTCCGCTGTCCACTATTATTAACTGGGAGAGAGAGTTTGAGATGTGGGCGCCGGATTTCTACGTGGTAACATACACAGGGGACAAGGATAGCCGGGCTGTCATTCGGGAGAATGAATTCACTTTTGAGGACAGTGCCGTCAAATCTGGACGTAAAGTTTTCCGGATGAAGAAAGACACTCCTGTGAAGTTTCATGTGTTGCTGACCTCGTACGAGTTGATCACCATTGACCAGGCCATTCTGGGATCTATTGGCTGGGCCTGTCTTGTAGTGGACGAAGCTCACAGGCTAAAGAACAACCAGTCTAAGtttttcagaaTTCTGAATGGCTATAAGATCTATTACAAGCTACTCCTCACTGGAACTCCACTGCAGAACAATCTAGAAGAGCTATTCCACCTACTTAACTTCCTCACCCCAGAGCGCTTCAACAATCTGGACGGCTTTCTGGAGGAATTTGCAGACATCTCTAAAGAAGACCAGATAAAGAAGCTGCATGACCTGCTGGGACCGCACATGCTCAGGAGGCTGAAGGcagatgtttttaaaaacatgccGGCAAAGACAGAGCTCATTGTCCGAGTAGAGCTCAGCCCCATGCAGAAGAAGTACTATAAATTCATCCTGACACGGAATTTTGAGGCTCTGAACTCCAAGGGAGGGGGAAACCAGGTTTCTTTGCTCAACATCATGATGGACCTAAAGAAATGCTGCAATCACCCTTACCTGTTTCCTGTGGCAGCtgtgGAGGCGCCGGTGTTACCCAATGGCTCTTACGACGGCAACCTACTGGTGAAGTCCTCAGGCAAACTCACTCTACTTCAGAAGATGCTGAAGAAGCTCAAAGACGAAGGACACAGAGTCCTTATTTTCTCCCAGATGACTAAGATGCTGGACCTGTTAGAGGACTTTCTGGAGTTTGAAGGCTATAAATACGAGCGTATTGACGGGGGCATCACAGGAGGACTGCGGCAGGAGGCCATTGATCGCTTCAATGCTCCGGGGGCGCAGCAGTTCTGTTTCCTGCTGTCCACACGGGCCGGGGGACTGGGGATCAATCTGGCAACCGCTGATACAGTTATCATCTATGACTCTGACTGGAACCCTCACAATGATATCCAGGCTTTTAGCCGAGCACATCGTATTGGGCAGAATAAGAAAGTGATGATCTATCGTTTCGTAACACGAGCATCTGTTGAGGAACGAATCACTCAGGTGGCCAAACGCAAGATGATGCTGACCCATCTGGTGGTGCGGCCAGGGTTAGGGTCTAAAACGGGATCCATGTCCAAACAGGAACTAGATGACATCCTTAAGTTTGGCACAGAGGAGCTCTTCAAAGACGATGTGGAAGCTATCGGGGACAATAAGGATGGAGAGGAAGGCAATGTGATCCATTACGATGACAATGCCATCTCCAAACTGCTGGACCGCAGCCAGGACGCCACGGAGGACACCGAGATTCAGAACATGAACGAGTACCTCAGCTCCTTCAAGGTGGCACAGTACGTGGTTCAGGAGGAAGACAGAGAGGAGGAGGTTCAAAGGGAGATTATTAAGCAGGAGGAGAACGTGGATCCAGATTACTGGGAGAAGCTCCTACGGCATCATtatgaacagcagcaggaggaccTGGCACGCAATCTGGGCAAGGGCAAACGCATCCGCAAACAGGTCAACTACAACGACACATCTCAGGAGGACCAagAATGGCAGGATGATCTTTCAGACAATCAGTCCGAGTACTCTGTGGGATCcgaggatgaggatgaagatTTCGAGGAGAGGCCTGAAGGAGGGCGCAGACAGTCTCGCAGACAGCTGAAGAGTGACCGGGACAAACCACTGCCCCCACTGCTGGCTAGGGTAGGGGGCAACATAGAGGTGCTTGGTTTTAATGCACGTCAGAGGAAGGCATTCCTGAATGCTATCATGCGATGGGGGATGCCACCACAGGATGCTTTTAACTCACACTGGCTGGTCAGAGACCTGAAGGGCAAGAGTGAAAAGGAGTTCAGGGCATACGTCTCATTGTTTATGAGGCACCTGTGTGAGCCTGGAGCTGATGGGGCAGAGACATTTGCGGATGGTGTGCCGAGAGAAGGTCTGTCCCGACAGCATGTTCTCACCAGGATCGGAGTCATGTCTCTGGTTCGGAAAAAGGTCCAGGAGTTTGAGCATGTGAATGGTAAATATAGCTCTCCTGAGCTAATTCCTGCAGGACTGGAGCTGAAGAAATTGACAGAGAGTCTTTCATCTGACCCAAACACTCCTGTTCCAGCCAGCCCTGCTCCAACACAACCCAGCACACCCGTACCCTCAGATAAAACTGATGGTGGTCCTGGTCTTCAAGAAGACAAAGAGGCTGCTGACCAGGAGAGCACCAAGCCTACAGAGTCTGAGACATCTAAAGAGTCAGAGCCTTTGCCCTTCCCCGAGAAGGCTACAGAGAACGAAGACGTGAAGAGAAGCAGCTCTGAGGAGAAGAGTAATGAAGAgagtgaaaagaaagaaaacacagcatCCCAAGCAGAGCCATCGGCCAATCAAACACAGCCAACATCCAAGCAGACAGAGCCGTCCACCAATCAGAATCAGCCTGCATCTACAGtagAGCAAAGTAAAGATGCAGAGAGCGCAGCTGAGAAATCAGAGAGTGACTCTACGCTGGTAAAAACTGAGGATAAAGAACCAAGACCAGTTTCCACAGCTGCTCCCCATGAGCCGAAATCCGAGGATGCTGCCGAGACGCAGCTGAATGGAGATAAAGAAGCGAGGGATGAGGCAGACGAGAGCCACAAAGACGACAAGAACGGCGTCAAGACACGCTTCATGTTCAACATCGCAGACGGAGGCTTCACAGAGCTGCACACTTTGTGGCAGAACGAAGAGCGCATAGCCGTGTCATCTGGCAAGATGTACGAAATCTGGCACCGCCGCCACGACTACTGGCTGCTGGCTGGCATTGTAACCCATGGCTATGCTCGCTGGCAGGACATCCAGAACGATCCTCGCTATGCCATCCTCAACGAGCCCTTCAAGACTGAGATGAACAAAGGCAATTACCTGGAGATGAAGAACAAATTTCTGGCACGACGTTTTAAACTGTTGGAGCAAGCCCTGGTGATAGAAGAGCAGTTGCGCAGGGCAGCCTATCTGAACATGACCCAGGATGCCGGCCACCCTGCCATGGCCCTGAACACACGCTTTGCTGAGGTTGAGTGCCTGGCCGAGTCCCACCAGCATCTCTCCAAAGAGTCACTGGCTGGCAACAAGCCAGCGAATGCTGTTCTGCACAAAGTTTTGAACCAGCTGGAGGAACTCCTGAGTGATATGAAGGCTGATGTAACGCGGCTGCCCTCCATGCTCTCCCGTATCCCTCCCGTATCCGCCCGGCTACAGATGTCCGAGAGGAGCATTCTCAGCCGACTCACGAGCCGCGGCAATGAGCCGCCTCCACAGCAGccTTTTCCACAGGGCTCGTTTGGCTGTTCTCAGATGTATAGTAACAGTTTTGGAGGAGGATTTAGGGGGCCTGGTGGGGCACCCATGGTCAATTATAGCCAGATGCCCCTAGGACCATACGTCAGTGTGTCCTCAAACGGCCCCCCACTTCCCAGCAGCCACCTAGACAAGAAGTCCAGCGACGCTCTGAGGGACATGTCCCCACCTGAGCTGAAATCCGGCAAGCCCTCTGATGTCATCTGCATTGAAGACTAGCCATGACTTCCCCGTTCTTTCAGTTAAATTAACACAGATACTATTCCCTCAAATTAATCAGTTCTATACAGATTCTTTCAATTGCACTTTCGTCTCAAAGAATAAGCATAATTTTATTTGGTAAGATCctgcttttttaatgtaatttattttcacTTCAGTGATGATGATGGGAACGTGTGTGGATGGAGACAGGActgaggatggagagttttaaGGCACTGGTCATCAGGCCTTGGTGCTTAAAAAGAATtgactttttgctgttttgacACATTTTCTGTCAAAGACTCTTAATTattatctctgcttttattgAGCCATTTTGGTGGGGCTGCTCGTCCTGAACTAGAATCCTGCACATCTCTTGGGACGTCATGTACAATCCCTTCCTTTTCTGCACCTCTAATACCTTCTTTCTGCTCTTCGGCTTGATCATGACGCACCAATCCTGCCCCCCAGTGGTTCTCTCTGTGTAGTGAAAGTGAAAGAGGAGGCAAATATAGTGTGACAGCTGGAGATTGCCTCAGCGGTGAGAAACATCCTTTTGTTTGGAATGCATTGTAAAGTGATTTAACACATTTTCACTAGTTGAGGGCTGGGAAGAAGTGCGGGATGGATGTAAACGCATTTTTTGTGCACTATGGTACGGTCTCTGCCTGTATCATAAGAATTATTCAGCCATAACCTGGAATTACTAACATGTTAAATATAGACCTGTcaggtttttttattcttttttgcttgataatataaacaaacataaatatctAATCATTAACTGGCATCCTGGCAGGTTTCCTATACATTATCTACAAAAACTAGTGTAGTTGAAAATCGTCTGTGATACATTTCCTTAAGCTCTGAATGtttttga

Function

symbol description
chd5 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within ATP-dependent chromatin remodeling; embryonic viscerocranium morphogenesis; and head development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and testis. Orthologous to human CHD5 (chromodomain helicase DNA binding protein 5).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 5 isoform X1

GO: NA

KEGG:

id description
K14435 CHD5; chromodomain-helicase-DNA-binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601976.2 True 8075 mRNA 0.50 41 8346072 8431062

Neighbor

gene id symbol gene type direction distance location
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 2725 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 101075 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 170902 8141553 ~ 8175170 (+)
LOC103023171 LOC103023171,LOC108438613 coding upstream 297255 8025007 ~ 8048817 (+)
LOC103023694 LOC103023694,LOC108438614,LOC108280988 coding upstream 335512 7828510 ~ 8010560 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding downstream 7651 8438713 ~ 8733125 (+)
klhdc7a LOC108438577 coding downstream 1405037 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 1592930 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 1688971 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 1746068 10177130 ~ 10180602 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding upstream 206567 8121744 ~ 8139505 (+)
G188062 NA non-coding upstream 225444 8120330 ~ 8120628 (+)
G188051 NA non-coding upstream 295960 8049638 ~ 8050112 (+)
G188009 NA non-coding upstream 344695 8000834 ~ 8001377 (+)
G187904 NA non-coding upstream 967484 7377151 ~ 7378588 (+)
G188149 NA non-coding downstream 69102 8500164 ~ 8501035 (+)
G188178 NA non-coding downstream 339246 8770308 ~ 8771086 (+)
LOC111195453 NA non-coding downstream 388094 8819156 ~ 8820096 (+)
G188185 NA non-coding downstream 418244 8849306 ~ 8849567 (+)
G188186 NA non-coding downstream 424444 8855506 ~ 8891767 (+)
agtrap agtrap other upstream 74360 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 232830 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1153846 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 1247400 7077165 ~ 7098672 (+)
p3h1 NA other upstream 2547093 5779891 ~ 5798979 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 852733 9283795 ~ 9819955 (+)
G188325 NA other downstream 1423245 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 1670693 10101755 ~ 10106530 (+)
G188624 NA other downstream 1872298 10303360 ~ 10303665 (+)
G188771 NA other downstream 2417009 10848071 ~ 10852736 (+)

Expression


Co-expression Network