LOC107197084


Basic Information

Item Value
gene id LOC107197084
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31739871 ~ 31747170 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602562.2
ccCCTGAACTCCCGTGTACTCGTGTGATTTCGTTTCTGGAGATTGTTTTGTACTTTTAACCGTTTTCGGCAGTAAGTATAGATCTCCAACATTTTGGACACCACGGCGGGGAGGATGTTCACTCTGGCTGAAGCTCGTGAGCAGGTTATTAGGTCTGATGAGCTTGAAGACGAGAGTGATGACGGTTCAATGGCGGCTAGCATGGACTCGGAGGACGAGGACGCATTCCTGCTTGGAATAGATGCTGTGCTCGACATTGAAGTGGATTCATCCATCACTCTTCCACCTGGTGTCTCTCCTTCAAAACCACTCCCAGGGCCTTGGTCGTCTGTGGACAGCCCTCACACCTCTGCTGGAGGACAGGCTAATGGCAGTGGCACCAGGAGCCCAGGCCCATCTCCAGCAAAAAGAAGAGTGCTCAAGAGTCCAGCGAAGAAGTGCACAGCCCCATCACCACCTGCAGGACTGGAGAGATGGTTTGACAACTCTGAGGAAGACGAGCAGCCTCGTCCACTGCAGTTTCGCCCCAGGAGGACTCCAGGAGTTCAGCTGGATTTTCAGACAGACTACAGTGCCTCGGAAATTTTCCAGCTGTTCTTCAGTAAAGAGGTGATCCGAACCTTGTGCATAAATACCAACAAATATGCGGCACGGAGAAGCGAGGAGGGCATGAAGAAGCAGTGGAAGGATGTAAACGCTGATGAAATGCTTCATTTTCTCAGCATAATCATCTATATGGGACTGTTGAAGCCTTCAGCTGTCCGGGACCTGTGGAGAAAGGACCGTTTACACAGCCATCCATTTCCTGCTTCTGTGATGGCCGGGTACCGGTATGGGGATATCGCTGCATACCTGCACATGAGTGACCCAGATTCAGATGCCAAAAATGACCAGCTCAGAGGTGAGCCTGAGTACGACGGTCTCTTCCGCCTAAAGCCGCTTCAGGAACAGATCTTGTCTGCCTGCAGAGCCTACTACCAGCCACACCAGAACCTCTCTATAGATGAACGCATGGTGGCAACCAAAGCGAGAATCGGGATGAAGCAGTACATGAAGAACAAGCCCACCAAGTGGGGGTACATGCTCTTCGTCCTGGCTGACAGCTCCAGTGGCTACACATGTAACTTCAGTGTCTATGAGGGAAAGGCAAGGAAACCATCAGGAAAAGGCCTGAGCTTCGATGCTGTTGTCAGTCTGCTCCATGTGCCCTCTCTGGGCACAGGGTACACGGTGTATGTTGACAACTTTTACACCAGCTCACTGCTCTTCCATCACCTGCACAGAATTGGTTTTGGGGCCTGCGGAACCATCCGTGAGACCAGGATAGGCTTCCCAAAAACAACGGTCAATGCCCTGCCAAAAGATGCGAACCGTGGCGACATGCGATGGATCAGGGATGGCTCACTGCTGTTTGTGAAGTGGAGGGACACGCGAGACGTCACAGTGTGCTCCACTGTCCACAAAGCTTACAGCGGGCAGTCTGTGCAGCGTCGCATCAGAATAAAAAACGGAACCTGGTCCACCCAACAGATCCCTGTGCCCGAACCAGTGAAGGCGTACAACAAGTTCATGGGGGGAGTTGACTTGTCTGACGCTCTCATAAAATACTATTCTGTGACGCAGAAGACCAGGCGTTGGTATGTGAAGCTGTTTCTCCATTTTGTTGACATTGCCGTGGTGAACAGCTTCATCATCCACAAGGAGATGGCCCTGGCAAGGAAGCAGAAGCCTCTCAGCCAGAAGAGCTTCAGGGAGGTGTTGTGTATGGAGCTGGCTGATGTTGGGCAGCCACAGGTATCCATCCCTGCAGAAGTCCCCAGTGAGACATCCTCTTCATCGGTGCCTCAAGATAAAGAGTTGAAACCAAAGGGGTGCTTTCCTGTTCCAGTTTCTGAGGTGTCTGCTGAGAATCGAATGAAAGCCACACAAGGCAGGAGGAAATGTGTGCAGTGCAAGATGAAAACAGCGTTCATGTGTAGATCGTGCAGCACTCCACTCTGCATAATCGTGGACCGAATGTGCTTTACAGAGTGGCACGACCAGAAGAGCGCTTAGGCACACATACTTTTGTACATTCTTGTAAATAGTTTGagttgttctgttctgtttttgccTCCTAAAATCCAACGCCTCATCCACATTGTAGGAGGTGGTAACTGAACATTGCAAGTATAACAGTGCAGCTGTACTGGCTAACGGTGCTCTGGTATGGATATGCTTGAAGAATAGATAAACTActgcctttaaaagactttgaTGTACAATATGTGGTGTCCGAAAGGTTTTgggtacatttttacattttgcataagatcattaaaaaaaaaaaaaaaaaagaaagaaatgcgcTCTGGTGAGGTTTTGAACCCTTTAGAGACACCTAGTGGACACCTAATGTAATACTGTGTAGCTTTTGTAGTTGTTTGTCAAGAGACCCTACTaaatcaggaaatgtagagcATTGACTAATCAccaacatttatacacacattgtaaactcACATTGTAAActcaaaaacctttttttaacaagtttttttattttttatttttttacattttcctttgCATTTGACGTACTCAAATGTAAcctaaataatggaaataaaagtctggaagtgaattattgttttgttcCATGTTTAAGTCTACTTTAGTTTAAGCCCTGAATGGTCATTGTGCTGTATGTAAATCTAAAGATATCCAGTGTTATAGCGCAGTAGTGCAAATCGCATTAAAATTAGCATAGAATTAGATATGTGTAACAATGCAGGTGCAATACATGAAAATAGAcagttggtggggtgtaagatagtaatgaacGATGCATTGAACCTTGCGCAGGATGTTATATAGGGCCCAAAGTGGTATTTGTCagtgtaactctgtattgtagtgctTGATAAAGGTTTGCCAAAGCTAATCCTTGCCTATAAAATTCTATCATTGTTGAATAAATGTTCATTATGTAGCACCATCTAAGGGATCAGTTATCAACAGGAGCTGTACTACTTTTACTGAATTACTGTTGAATTGGTTCCATTTGGTCGTGTCTCCAAACACGAATTAGTTTTTCACGAGTGCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602562.2 True 3087 mRNA 0.46 2 31739871 31747170

Neighbor

gene id symbol gene type direction distance location
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 304384 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 369325 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 452767 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 509042 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 883322 30847297 ~ 30856549 (-)
thoc7 thoc7,LOC107739288 coding upstream 31187 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 93938 31841108 ~ 31844991 (-)
LOC111195428 kdm1b coding upstream 157065 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 182556 31929726 ~ 32080712 (-)
adamts9 adamts9 coding upstream 352296 32099466 ~ 32196761 (-)
G194046 NA non-coding downstream 37619 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 42101 31696272 ~ 31697770 (-)
G194040 NA non-coding downstream 168583 31546553 ~ 31571288 (-)
G194038 NA non-coding downstream 216068 31522742 ~ 31523803 (-)
G194034 NA non-coding downstream 242635 31496002 ~ 31497236 (-)
LOC111195341 NA non-coding upstream 147332 31894502 ~ 31899990 (-)
G194105 NA non-coding upstream 154638 31901808 ~ 31902072 (-)
G194153 NA non-coding upstream 333845 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 334338 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 583156 32330326 ~ 32334659 (-)
cadps cadps,LOC107549847 other downstream 85661 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 545822 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 564993 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 908914 30809794 ~ 30830957 (-)
G193737 NA other downstream 1559745 30165761 ~ 30180126 (-)

Expression


Co-expression Network