LOC103046766 (LOC108436454)


Basic Information

Item Value
gene id LOC103046766
gene name LOC108436454
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27296666 ~ 27299571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605466.2
AGGGTAGCACATATCGACGGAACACCCGCTCTGTAGAGGAAGTGGAATTATTGCTATAGTGATTTAGCGCGgcggtgagtgagtgtgttgttgttgtgtaaAAGATGAATAAAATGGAGAGTTTAAACTCTTTCTTTATAGAGAGGTTAATGAGTGTGGCCGGGGAGATATGTGCCGCGGTTAAAGAGGCGGTGTGTGAGTATCAGGAGGAGGCGGAGAGAACTAAACAGGAGAACCAGCGGCTGAAGGAGATTCTGACTGAGATCACCGTCTGTATCAACACCCAGGCTCAGAGAGCCGCAGATCTACAGCTACCTCGTGCTGATGGAGATCCTCCAGAGCAGAACTCCGACCAAAGACCACTGGACTCACATCTGTCAGAATTACAGCTGAACCTGGAACTTTCCACCACTGAGCAAGACCCTGATCCACGGCCACCATTGAATAATGTATCTGCAAGCAGCTCTGCCTTTGTTCATGGTCCAGATCCAGCCAGTCAAGCTGTTCGTCAGGAGTTCCAAAATTTCAGCCAGGAGCCACTGGACACAAATCCCCCAATTATACAAGTAAAAGAGGAGCTTCCATGCTCTCTCAGAATAATGCATCAGAATACTGAAGCCCACAAACCATTGAACAACCCACTATCCCCATCATCCTCTCCCTCTGCAGCAGCAGTATATAATGAGGAAACTCCTCAGCATCCTTTCAGAGACATTGTGAAGGAAGAAATCGGTGCTGAAGGTCCACATACCTCTGAATGTACAATCAAATTGGAACCGTGGGACTCGCAGGGTGTCTGCTCTGATAACGGAACCGTAGTACAAACCGAAAATCTATCAGAGAACCATCTGGAAGCTTTAAGGGAAGGTCCCGACAGCATCCCTTCTCTTCAGTATACAGTTCAATCTGATAATGTTCCTCAGAGCCAGAGCCCTGCAGGTCTTTTCTGCTGCAGGTACTGTCGAAAATCCTTCAAAAGTCGTGGCAGCTGAAGCAGCACATGGTCGTGCATCAGAAGTACAGGCCTTACCGCTGCGACGTGTGTGGAAAGTCCTACAGTTACGCACAAGTGCTGGAGATCCACTACAGGACCCACACTGGAGAGAGACCGTACAACTGTCGCTTCTGTGGCCGGTCCTTCAGACAGAGAAGTCACCTGACTGACCACGAAAGAATTCATACCGGGGAAAAGCCATATAGCTGTACAGTTTGTGGAAAGCGTTTCATCCAGTCGAGTCAGGTTAAGAAGCACTTTCGCAACCTTCATCAACGGACTGTATATCAGAAGTAACTACTGAATCGCTGCTGAAGGACATTTAATAGGTGTTACATGTTTTGTGTCTGCATTTAatgtagggatgcaccaatgtTGGGAATTCGATGATGATACTGTATATTGACATTTGTTACTTGCAGAAAGTAAAGACACCCtggtttaactttaaaattaattaaaactgaACGAAACGGACAAAATTTATATCACCATATAATCCTTCATTTCGGTCGATATGATATTCCAAtattgaaataaacattatagcCTCTGCCCTTGGTGTGCACAATGACATGCTTTTGGGGTTGggtgatattgtaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: zinc finger protein 354A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605466.2 True 1610 mRNA 0.45 3 27296666 27299571

Neighbor

gene id symbol gene type direction distance location
LOC107197599 NA coding downstream 3857 27287220 ~ 27292809 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding downstream 6347 27274657 ~ 27290319 (-)
LOC103032351 LOC108435192 coding downstream 86350 27197051 ~ 27210316 (-)
prelp prelp coding downstream 125671 27162747 ~ 27170995 (-)
LOC103047370 NA coding downstream 143340 27147714 ~ 27153326 (-)
LOC103029919 NA coding upstream 1725 27301296 ~ 27303940 (-)
bcl2l15 NA coding upstream 145908 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 457656 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 612104 27911675 ~ 27955052 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding upstream 662796 27962367 ~ 28008609 (-)
G193160 NA non-coding downstream 56764 27239426 ~ 27239902 (-)
G193156 NA non-coding downstream 66364 27230099 ~ 27230302 (-)
G193110 NA non-coding downstream 157430 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 297593 26927108 ~ 26999073 (-)
G193062 NA non-coding downstream 397262 26898271 ~ 26899404 (-)
G193178 NA non-coding upstream 24835 27324406 ~ 27324839 (-)
G193179 NA non-coding upstream 29171 27328742 ~ 27331162 (-)
G193181 NA non-coding upstream 56407 27355978 ~ 27356313 (-)
G193185 NA non-coding upstream 70604 27370175 ~ 27370433 (-)
LOC111195339 NA non-coding upstream 83409 27382980 ~ 27384041 (-)
G193097 NA other downstream 263577 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 572560 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1418013 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2079116 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3190768 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 91223 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 125471 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 711420 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 894808 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1276536 28576107 ~ 28586222 (-)

Expression


Co-expression Network