LOC107197599


Basic Information

Item Value
gene id LOC107197599
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27287220 ~ 27292809 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605467.2
AGAACTCTGCTGATAAACCAGTAGGGGGCGGTGTGGAGCTGAGTGCGTTTTTTCTCAGCAGACTGAGGCATTGAGGAAGCGGAGCGGCGTCCAGGAGAACTATTCAGATTTATTCACAACAAACCGAGGTTTAACATGAGCAGAATTGAGCACCTGAGCTCCTTCTTTATAGAGCGGTTAATGTCGGTGGCTGCAGAGATTTATGAAGCGGTTAAAGACACTGTTTCTGACTatcagagagagatagagctgaCTAAAGAGGAGAACCACCGTCTGAGGAAACTGCTGGAGGAGATCAGCCTCAGCGCCCGCGAAGAACCCGGAGACCCGGACACCgATCTGCAGCCCAGTCATCCTGAGCCGTCTCCAGAAAAACTAGACTTCTACCAAAGACCGCTGCCTTCAAATTCCTCTGTATTACAGCAGAAACTTGAGCTCACCTCCGTAAAACAAGAACCTGAGTCGCAGCAGCTGCCTCCAAATGATGTATCTGCAAGCGCTTCTCCATGTGCGAAGAGCGTCCACGGTGAGGAGTTTACATGTTTGTCAGACACATGGACTAGCCATGCAGACGGAATGCTTCATGAACCACAAAACGCCAGCCAAGGCCTACAGGACACAGAGCCCTCACTAAAACAGGGGAAGCTTGAGCTCGCCACCATGCAAGAAGACCCTCATCCCCAACAGAAGCATGTAGGTCAGTCATCATCGGTGTCCCATAAATCTTTGGATGTGGAGGGAAGAAAAGGTGACTGTCTATATAGAAACCCTGTTCTGATAATCAAGTTAGAACCATGTGACTTAAAGAAACCACAGTCATCTAAGCCCAGCCCCAATACTGCCGAAACCTGTAATCCAGTGTTGGAACCCATATCCACCCATGTTGAAATGACCAATGCTGCACCAGCAGCTGTGCCATCAGCAGAGGAAGCAGTGTCCAGCAGTGGCGTAAGTGATAACCCATTAATAACGAGGGTTTGGTCTCTAAATATGCACAACACCAGGACTGATAAAGAAGATCTGTACCACATAGAGAGACCGTTCCTCTGCGAGTCCTGCGGTAAAAGGTACAAACAGAAGAAGCACCTGAAGGACCACCAGAGACTTCACACTGGAGACCGGCGCTTCAGCTGCTCTGTATGTGGGATGcgttttttttggacaaatcAGGTCAAGGTGCACATTCAGCGCCACCACAAACGGCAGGAAGCTACAGTGCTTAGAATGCCATATTTGTAACATTGGAACATCATGAACATTGAATGTCTTTTAAATCTGCCCCAGGGATTCTCTACCTTTGTTGTTTGAATAtagtacaaataaaatgtgtgtttcttTGGA
>XM_015605468.2
AGAACTCTGCTGATAAACCAGTAGGGGGCGGTGTGGAGCTGAGTGCGTTTTTTCTCAGCAGACTGAGGCATTGAGGAAGCGGAGCGGCGTCCAGGAGAACTATTCAGATTTATTCACAACAAACCGAGGTTTAACATGAGCAGAATTGAGCACCTGAGCTCCTTCTTTATAGAGCGGTTAATGTCGGTGGCTGCAGAGATTTATGAAGCGGTTAAAGACACTGTTTCTGACTatcagagagagatagagctgaCTAAAGAGGAGAACCACCGTCTGAGGAAACTGCTGGAGGAGATCAGCCTCAGCGCCCGCGAAGAACCCGGAGACCCGGACACCgATCTGCAGCCCAGTCATCCTGAGCCGTCTCCAGAAAAACTAGACTTCTACCAAAGACCGCTGCCTTCAAATTCCTCTGTATTACAGCAGAAACTTGAGCTCACCTCCGTAAAACAAGAACCTGAGTCGCAGCAGCTGCCTCCAAATGATGTATCTGCAAGCGCTTCTCCATGTGCGAAGAGCGTCCACGACACATGGACTAGCCATGCAGACGGAATGCTTCATGAACCACAAAACGCCAGCCAAGGCCTACAGGACACAGAGCCCTCACTAAAACAGGGGAAGCTTGAGCTCGCCACCATGCAAGAAGACCCTCATCCCCAACAGAAGCATGTAGGTCAGTCATCATCGGTGTCCCATAAATCTTTGGATGTGGAGGGAAGAAAAGGTGACTGTCTATATAGAAACCCTGTTCTGATAATCAAGTTAGAACCATGTGACTTAAAGAAACCACAGTCATCTAAGCCCAGCCCCAATACTGCCGAAACCTGTAATCCAGTGTTGGAACCCATATCCACCCATGTTGAAATGACCAATGCTGCACCAGCAGCTGTGCCATCAGCAGAGGAAGCAGTGTCCAGCAGTGGCGTAAGTGATAACCCATTAATAACGAGGGTTTGGTCTCTAAATATGCACAACACCAGGACTGATAAAGAAGATCTGTACCACATAGAGAGACCGTTCCTCTGCGAGTCCTGCGGTAAAAGGTACAAACAGAAGAAGCACCTGAAGGACCACCAGAGACTTCACACTGGAGACCGGCGCTTCAGCTGCTCTGTATGTGGGATGcgttttttttggacaaatcAGGTCAAGGTGCACATTCAGCGCCACCACAAACGGCAGGAAGCTACAGTGCTTAGAATGCCATATTTGTAACATTGGAACATCATGAACATTGAATGTCTTTTAAATCTGCCCCAGGGATTCTCTACCTTTGTTGTTTGAATAtagtacaaataaaatgtgtgtttcttTGGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605467.2 True 1341 mRNA 0.48 3 27287220 27292809
XM_015605468.2 False 1317 mRNA 0.48 3 27287220 27292809

Neighbor

gene id symbol gene type direction distance location
LOC103032351 LOC108435192 coding downstream 76904 27197051 ~ 27210316 (-)
prelp prelp coding downstream 116225 27162747 ~ 27170995 (-)
LOC103047370 NA coding downstream 133894 27147714 ~ 27153326 (-)
il10 NA coding downstream 153364 27129152 ~ 27133856 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding downstream 937515 26114437 ~ 26349705 (-)
LOC103046766 LOC108436454 coding upstream 3857 27296666 ~ 27299571 (-)
LOC103029919 NA coding upstream 8487 27301296 ~ 27303940 (-)
bcl2l15 NA coding upstream 152670 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 464418 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 618866 27911675 ~ 27955052 (-)
G193160 NA non-coding downstream 47318 27239426 ~ 27239902 (-)
G193156 NA non-coding downstream 56918 27230099 ~ 27230302 (-)
G193110 NA non-coding downstream 147984 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 288147 26927108 ~ 26999073 (-)
G193062 NA non-coding downstream 387816 26898271 ~ 26899404 (-)
G193154 NA non-coding upstream 2919 27295728 ~ 27305659 (-)
G193178 NA non-coding upstream 31597 27324406 ~ 27324839 (-)
G193179 NA non-coding upstream 35933 27328742 ~ 27331162 (-)
G193181 NA non-coding upstream 63169 27355978 ~ 27356313 (-)
G193185 NA non-coding upstream 77366 27370175 ~ 27370433 (-)
G193097 NA other downstream 254131 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 563114 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1408567 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2069670 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3181322 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 97985 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 132233 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 718182 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 901570 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1283298 28576107 ~ 28586222 (-)

Expression


Co-expression Network