LOC103029919


Basic Information

Item Value
gene id LOC103029919
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27301296 ~ 27303940 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605469.2
CGCTGTTTCTACACTAAACCGCTTGGTAAAAGCAGTAAACAGTCGGAGGAGAttcgtgtgtttgtgttgttggAGACAGTAGTGAACATGACTTCTGATaaactggagtttttaaactcgTTTTTCTCTCAGCGGCTGCTGGCGGCTGCTGGAGAGATATTCCAGGTGGTGAAGGACACGATTACTGAATACCAGCAGGAAATAAACCGGATTAATCAGGAAAACCAGAGTCTGAAGATAAGGCTGAGGGAGAGGAGTGGGAACAATGAAGCAGATGATCAGTCCAGTCAAGCTGTTCCTATGGATGTACCAAACTATAGCCAAGAACACCTGGACACCAAGCCCTCAATCATAAATGTGAAAGTGGAACTCTCCACCACTTTGCACCCGGATGCTGAATCACAGGATCCATCACAGGACCCGTCAAATGATCCACCGTCATCTTCATCTTGTTCTCCATATCCAGAATCCGTGGACTGTACAATCATCTGCAAGGATGAAGCTCCAGAGATCAAACATGAAATAGTTGAGaattatcatcatttaaaaggtCAAAGCACTTCTTCTCAGTGTTTGATATCCCCGGCTGAAACTCTCTCCCAGACTCAGGCTGGTGAACCGGTGGTTTATTGTGAGTTCTGTGGAAAGCCTTTTGATACTCGTGAGCAGCTTAAGCAGCACCTCGTTATCCATAGGGATGAACGTCCCAGGCCGTATCGCTGCGACCTGTGTGATAAGAGCTACAGCTATGCCCAAGTGCTGGAAACACACCGTAGAACTCACACCGGAGAGAGACCATACGACTGTCGGTTCTGTGGGAGACGCTTCAATCAGAAATGTCACCTGAAGTACCACGAGAAAATTCATACCGGTGAAAAGCCGCACAGCTGTTCGCTTTGTGGAAAACGATTCATTCAGAAAAGTCAAATGAAAAGGCACACCTGTAACCCTTATGAAACTGCGTTCAGGCAGTCAGGCAAGCCACCAAGCTGCAAATGAatttcagtaaataaaacatgaacCGTAATGAATGCAGTTATATTAGCATCATATAGAATGGTGTACTGATTGTGCTTATTAAGTCAGACCTGTATGGGGCAGAGCAAGAAGGTAAATACAGGAAAGAAAATAAGTCTGTATTCTGGACTACTGCAGATTTGTCTACAGGGAGCAGCAGAAGAGATGGCAGAGTAATCACGAagctacaatttaaaaaatattaattaatcatcCCATCAGACATACTAATGCCTGGTCCACACTACATAATCTTAGATAATATTATCCAATGTTGAAAACATTAGACATAAAGACATTTTTCATGCTGATATACACAAAAGTGAATACCCTTTAGACATTATCGACTGTGTGTTGAGTTCTTTAGAGGGCAcacagctgtacactgactactttacatagTATCAAAGTTTCATATTTTCAGTGTTGTTCCATTAAAATATGTGATGGGTGTACTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605469.2 True 1477 mRNA 0.43 2 27301296 27303940

Neighbor

gene id symbol gene type direction distance location
LOC103046766 LOC108436454 coding downstream 1725 27296666 ~ 27299571 (-)
LOC107197599 NA coding downstream 8487 27287220 ~ 27292809 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding downstream 10977 27274657 ~ 27290319 (-)
LOC103032351 LOC108435192 coding downstream 90980 27197051 ~ 27210316 (-)
prelp prelp coding downstream 130301 27162747 ~ 27170995 (-)
bcl2l15 NA coding upstream 141539 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 453287 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 607735 27911675 ~ 27955052 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding upstream 658427 27962367 ~ 28008609 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding upstream 720397 28024337 ~ 28028670 (-)
G193165 NA non-coding downstream 1347 27264467 ~ 27299949 (-)
G193160 NA non-coding downstream 61394 27239426 ~ 27239902 (-)
G193156 NA non-coding downstream 70994 27230099 ~ 27230302 (-)
G193110 NA non-coding downstream 162060 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 302223 26927108 ~ 26999073 (-)
G193178 NA non-coding upstream 20466 27324406 ~ 27324839 (-)
G193179 NA non-coding upstream 24802 27328742 ~ 27331162 (-)
G193181 NA non-coding upstream 52038 27355978 ~ 27356313 (-)
G193185 NA non-coding upstream 66235 27370175 ~ 27370433 (-)
LOC111195339 NA non-coding upstream 79040 27382980 ~ 27384041 (-)
G193097 NA other downstream 268207 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 577190 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1422643 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2083746 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3195398 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 86854 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 121102 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 707051 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 890439 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1272167 28576107 ~ 28586222 (-)

Expression


Co-expression Network