LOC103042113 (LOC103042113,LOC108435091)


Basic Information

Item Value
gene id LOC103042113
gene name LOC103042113,LOC108435091
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29233512 ~ 29254829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607748.2
GATTAAGATTGGACTTAGTATTTTGACTGATATTTATGCTAGTATCAAGATTAAGATTGGGGGTTGGCTGTAAACTGGTTCTAAAGTTAGTATCAGGCTTTAGACTGATTTTAATGTTAGTATTAGGATTAAGACTGGGGGTTGCCTGTAGACTGGTGCTGAAGTTGGTATCAGGCTTTAGACTGAAGTTAATGTTAGTATTGCAATTAAGATTGATCCAACATTTGATCCCCCACCCCTGTGTCTTATCTATGACCCCCACCATTACCGTCTTTAGTGTCTTCACCTTTAGATCTCGCGCCCAGACCCAATCAGCCCCCTACCCTTGGTAAAGCTCCCGGATGCACGCTCGCCCCTCCCCCGCCGTTCCGCGCGCTACTTAAACTCCAGCGCGAGTTACAGCGCTGCTGTGAGCGCGAGCTGCCTGTGGCTGAATCTACTGCATTAAAGTCGGACCAGCGCGCGCCCTTCTTCTGCACGAGTCTGCGATAACCCGGATTAAAGGGATCTTTAGACATCGTCTTCCTGCTTCTCtacttcatcatcatcttcattatCCTCATCTTCCTCAGAATGCTCtctgcgctgctgctgctcgtGTGGAGCTGGAGCGTGCAGCCGGTGTCGGGGGCGCGCGGTGCGGCGGAGAGCCCGTTTCCCGCTGCTGCGGCGGAGCGGCGCGCGGTGCAGCGGGAGATCCTCGCGCTGCTCGGGCTGCCTCACCGCCCGCGGCCGCCCTCCCCGCTAAAGCGCACAGCCGCCCCGCTCTACATGCTGGACCTGTACCGCGCGGTACTCGCGGACGGAACCGAGCCGCGCGCGCCCCTCCCGCCCACCGAGCACGAGGAGGAGCGGCTGCTGAGCGACGCGGACATGGTGATGAGCTTCGCCAACCTGGTAGTGGATCCTGAGGAAGACCCTAATGTGTTTCATCAGTACCACCGCTTCGACCTGTCCCGCATCCCGGACGGGGAAACGGTAACGGCTGCAGAGTTCCGCGTCTACAAGGAGTTTGTGCACGAGCGTTACGAAAACGAGACGTTCCACGTCAGTGTGTATCAGGTGCTGCGCGAGCAGGACGGAAGGGAATCGGATCTGTTCCTGCTGGACTCTCGGGTAGTGTGGGCAGCTGAAGAAGGATGGCTGGTGTTTGACCTCACGGCCACCAGCAACCACTGGCTGCTGCACCCGAGTCAAAACCTGGGGCTGCTGCTGGCTCTGGAGAGCGTAGAAGGCGAGCGCATAAACCCCAGGGCGGCAGGGCTGGTGGGCAGCAGAGGACCTCAGAACAAGCGGCCATTCGTCATAGCGTTCTTTAAAGCTACCGGAGTGCGTCTCCGCAGTGTCCGCTCGGCCCCAGGACACAAGAGGAACCAGAACCGGTCCAAAGCCCCGAAACATGCGGCTCCGTCCACCCAGGAGGCCCTGAAACTGGCCGAGGCTGCAGAGAATGTCAGCGTGGATCCAAAACAGGGCTGCAAGAAACATGAGCTGTACGTTAGCTTTCGGGACCTGGGGTGGCAGgACTGGATTATAGCTCCAGAAGGCTACGCTGCGTATTACTGTGAGGGAGAGTGTGCGTTCCCTTTAAACTCCTACATGAACGCCACCAACCACGCCATCGTTCAGACTCTGGTGCACTTTATAAACCCGGACTCCGTCCCGAGGCCGTGCTGCGCCCCCACCCAGCTCCACGGCATCTCCGTACTTTACTTCGACGACAGCTCCAACGTCATCCTAAAGAAGTACCGCAACATGGTGGTCAGAGCCTGCGGATGCCACTGACCATGTATTCCACTGGTCATTGACTGAGAGAGAACAATGAAGAAAGCCAGTCAGTTGTTCATCCAGGAGCCATGTGTTTTAATGGGACTCGTTAACTGGGGCAATGCTGGCATCTGTGCCACACAGAACCACAGTGGAAATATGGTGGAAATAGGGCACCCAAAGTGGAAAATAGTGGGAGGCACATTGAAACGGCATGTTTCAATCCACGAGCACAGTGAAGCATGAAGAGATGGGGCAATAAAGGCTCACTTATGGATTGGAATTGGGTTAAAGTGATTGTTAAAGTTTGGTAAATCAAATAAGTCAAAGTTCAAATTGTGCTTTTTGGCTCTAAGGCTAAAGCAGTGAGTAAACTTATAAACACCTGTTAGTACAGAACACCCAAATAAATCTGttaagtataaaaactaaacaaagtaTGGAGACTTAGGTCAACCATAAAAAACCATCAGGACCTTCTCTAGGCCTTTAAAAATGTCAGATTATTTTtggaatttaaaaaagaaaatctgcatttttttatttaatagtgtTATCAGGCTTGTTGTTCTTGTAAAACCAAATATTTCAAAGACAAAATTCACAAAATGGAagtgaaataagaaaaaagagatCTTAGATGTGCTTTTTTCTACACTTCATGCTGTTCTTTCTTAGAAAAGCTTTTGTGAATCCGTCCCCTGGAGTATTTGATGAACTACAGACATAACTAGAAAGTAATGGAGGAATCAACCAACCCTTTGTAGCTTCGTAGATCAGGTTTTGATTTACAGTTAGTAATAGCTTCACAAGAAACATCAGTCCAGGTCTGCTGGAAGCCCCTGTGTATGCCACTGACTGTGAATATGAGAGTAGTACGTCCAGGTTTCAGTCAGGTTGCTGGTAATGGAGAACAGTGACAAAAGTTCAGTGCAAAAATTCTTTACTGCAATAACgtgaaaataatgcaaaggaaaatatatgtaaaagtcTATtgtaaatttcaaataaaacttATTGAATGTGTTTTACAAGTCT
>XM_022682773.1
aGGATTAAGATTGGACTTAGTATTTTGACTGATATTTATGCTAGTATCAAGATTAAGATTGGGGGTTGGCTGTAAACTGGTTCTAAAGTTAGTATCAGGCTTTAGACTGATTTTAATGTTAGTATTAGGATTAAGACTGGGGGTTGCCTGTAGACTGGTGCTGAAGTTGGTATCAGGCTTTAGACTGAAGTTAATGTTAGTATTGCAATTAAGATTGATCCAACATTTGATCCCCCACCCCTGTGTCTTATCTATGACCCCCACCATTACCGTCTTTAGTGTCTTCACCTTTAGATCTCGCGCCCAGACCCAATCAGCCCCCTACCCTTGGTAAAGCTCCCGGATGCACGCTCGCCCCTCCCCCGCCGTTCCGCGCGCTACTTAAACTCCAGCGCGAGTTACAGCGCTGCTGTGAGCGCGAGCTGCCTGTGGCTGAATCTACTGCATTAAAGTCGGACCAGCGCGCGCCCTTCTTCTGCACGAGTCTGCGATAACCCGGATTAAAGGGATCTTTAGACATCGTCTTCCTGCTTCTCtacttcatcatcatcttcattatCCTCATCTTCCTCAGAATGCTCtctgcgctgctgctgctcgtGTGGAGCTGGAGCGTGCAGCCGGTGTCGGGGGCGCGCGGTGCGGCGGAGAGCCCGTTTCCCGCTGCTGCGGCGGAGCGGCGCGCGGTGCAGCGGGAGATCCTCGCGCTGCTCGGGCTGCCTCACCGCCCGCGGCCGCCCTCCCCGCTAAAGCGCACAGCCGCCCCGCTCTACATGCTGGACCTGTACCGCGCGGTACTCGCGGACGGAACCGAGCCGCGCGCGCCCCTCCCGCCCACCGAGCACGAGGAGGAGCGGCTGCTGAGCGACGCGGACATGGTGATGAGCTTCGCCAACCTGGTGGATCCTGAGGAAGACCCTAATGTGTTTCATCAGTACCACCGCTTCGACCTGTCCCGCATCCCGGACGGGGAAACGGTAACGGCTGCAGAGTTCCGCGTCTACAAGGAGTTTGTGCACGAGCGTTACGAAAACGAGACGTTCCACGTCAGTGTGTATCAGGTGCTGCGCGAGCAGGACGGAAGGGAATCGGATCTGTTCCTGCTGGACTCTCGGGTAGTGTGGGCAGCTGAAGAAGGATGGCTGGTGTTTGACCTCACGGCCACCAGCAACCACTGGCTGCTGCACCCGAGTCAAAACCTGGGGCTGCTGCTGGCTCTGGAGAGCGTAGAAGGCGAGCGCATAAACCCCAGGGCGGCAGGGCTGGTGGGCAGCAGAGGACCTCAGAACAAGCGGCCATTCGTCATAGCGTTCTTTAAAGCTACCGGAGTGCGTCTCCGCAGTGTCCGCTCGGCCCCAGGACACAAGAGGAACCAGAACCGGTCCAAAGCCCCGAAACATGCGGCTCCGTCCACCCAGGAGGCCCTGAAACTGGCCGAGGCTGCAGAGAATGTCAGCGTGGATCCAAAACAGGGCTGCAAGAAACATGAGCTGTACGTTAGCTTTCGGGACCTGGGGTGGCAGgACTGGATTATAGCTCCAGAAGGCTACGCTGCGTATTACTGTGAGGGAGAGTGTGCGTTCCCTTTAAACTCCTACATGAACGCCACCAACCACGCCATCGTTCAGACTCTGGTGCACTTTATAAACCCGGACTCCGTCCCGAGGCCGTGCTGCGCCCCCACCCAGCTCCACGGCATCTCCGTACTTTACTTCGACGACAGCTCCAACGTCATCCTAAAGAAGTACCGCAACATGGTGGTCAGAGCCTGCGGATGCCACTGACCATGTATTCCACTGGTCATTGACTGAGAGAGAACAATGAAGAAAGCCAGTCAGTTGTTCATCCAGGAGCCATGTGTTTTAATGGGACTCGTTAACTGGGGCAATGCTGGCATCTGTGCCACACAGAACCACAGTGGAAATATGGTGGAAATAGGGCACCCAAAGTGGAAAATAGTGGGAGGCACATTGAAACGGCATGTTTCAATCCACGAGCACAGTGAAGCATGAAGAGATGGGGCAATAAAGGCTCACTTATGGATTGGAATTGGGTTAAAGTGATTGTTAAAGTTTGGTAAATCAAATAAGTCAAAGTTCAAATTGTGCTTTTTGGCTCTAAGGCTAAAGCAGTGAGTAAACTTATAAACACCTGTTAGTACAGAACACCCAAATAAATCTGttaagtataaaaactaaacaaagtaTGGAGACTTAGGTCAACCATAAAAAACCATCAGGACCTTCTCTAGGCCTTTAAAAATGTCAGATTATTTTtggaatttaaaaaagaaaatctgcatttttttatttaatagtgtTATCAGGCTTGTTGTTCTTGTAAAACCAAATATTTCAAAGACAAAATTCACAAAATGGAagtgaaataagaaaaaagagatCTTAGATGTGCTTTTTTCTACACTTCATGCTGTTCTTTCTTAGAAAAGCTTTTGTGAATCCGTCCCCTGGAGTATTTGATGAACTACAGACATAACTAGAAAGTAATGGAGGAATCAACCAACCCTTTGTAGCTTCGTAGATCAGGTTTTGATTTACAGTTAGTAATAGCTTCACAAGAAACATCAGTCCAGGTCTGCTGGAAGCCCCTGTGTATGCCACTGACTGTGAATATGAGAGTAGTACGTCCAGGTTTCAGTCAGGTTGCTGGTAATGGAGAACAGTGACAAAAGTTCAGTGCAAAAATTCTTTACTGCAATAACgtgaaaataatgcaaaggaaaatatatgtaaaagtcTATtgtaaatttcaaataaaacttATTGAATGTGTTTTACAAGTCT

Function

NR:

description
bone morphogenetic protein 7-like isoform X1

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048264 determination of ventral identity biological_process
GO:0040007 growth biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001947 heart looping biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607748.2 True 2805 mRNA 0.50 7 29233512 29254827
XM_022682773.1 False 2804 mRNA 0.50 7 29233512 29254829

Neighbor

gene id symbol gene type direction distance location
LOC103040895 LOC108436021 coding downstream 14504 29177346 ~ 29219008 (-)
LOC103042433 taf4,LOC108436032 coding downstream 60017 29151721 ~ 29173495 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 662570 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 725956 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 904224 28323355 ~ 28329288 (-)
LOC103040276 NA coding upstream 15092 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 25321 29280150 ~ 29291603 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding upstream 47705 29302534 ~ 29759625 (-)
LOC103043315 NA coding upstream 1464147 30718976 ~ 30720245 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding upstream 1474406 30729235 ~ 30802508 (-)
LOC111195426 NA non-coding downstream 545 29227704 ~ 29232967 (-)
G193638 NA non-coding downstream 56647 29176455 ~ 29176865 (-)
G193637 NA non-coding downstream 57388 29175914 ~ 29176124 (-)
G193568 NA non-coding downstream 302591 28875917 ~ 28930921 (-)
G193540 NA non-coding downstream 637505 28595651 ~ 28596007 (-)
G193642 NA non-coding upstream 9145 29263974 ~ 29266389 (-)
G193649 NA non-coding upstream 41972 29296801 ~ 29297084 (-)
G193652 NA non-coding upstream 124918 29379747 ~ 29380489 (-)
G193662 NA non-coding upstream 329623 29584452 ~ 29584846 (-)
G193678 NA non-coding upstream 477743 29732572 ~ 29733272 (-)
G193541 NA other downstream 634874 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 647290 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 1020442 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1217900 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1532181 27425042 ~ 27701331 (-)
G193737 NA other upstream 910932 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1554965 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1915469 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1919978 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2195974 31450803 ~ 31654210 (-)

Expression


Co-expression Network