LOC103033844 (cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311)


Basic Information

Item Value
gene id LOC103033844
gene name cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 991934 ~ 1005603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682194.1
TTTCTGAGTTTACTCTGCGCCACAGAGCCGCTCTGAATCACGCGTTATGTTCCTGACCTGaacacttctctctctttttaccccGTTCAGACCATAATCTCGCTTTATTAGTGTTAATTTAGAgtttaaaaaagtcaaaatgtCGAATATCACCTATTATATTTCCAACTTGTTGGAAAAAATGACCTCAACTGACAAAGACTTTCGGTTCATGGCCACCAATGATCTGATGATGGAGCTGCAGAAGGATTCTATAAAGCTGGATGAGGACAGTGAGAGGAAGGTGGTGACCATGCTCCTGAAGCTTCTGGAGGACAAAAACGGGGAGGTTCAGAACCTGGCCGTCAAATGTTTAGGTCCTCTGGTGAGTAAAGTGAAGGAATATCAGGTGGAGACGATGGTGGACACGCTGTGCTCCAACATGGTGTCGGATAAGGAGCAGCTCAGAGATATCTCCAGCATGGGGCTGAAGACAGTTATCGCTGAACTGCCCCCAGCGTCTGCAGGTTTGTGTCTGACTGCTAACGTCTGTAAAAAGATCACATCTCAGCTGATTGGTGCCATGGGGAAGCAGGATGATGTACCTGTGCAGCTGGAAGCCCTGGATATCCTCTCAGATATGCTGGGAAGGCTCGGCAGTACGCTGGTCAGCTTTCACCAGTCCATTCTGACCAGTCTGCTCCCCCAGCTCACCAGTCCACGCATGGCGGTCAGGAAGCGTGCCATCATCGCCCTGGGTCACCTGGTGCCCAGCTGCAGCCCCGCCCTCTTCACCCAGCTCACCGAACACCTAATGGGGGAGATGACCAGAGGGGGCGCTACAGCCAACACTCGCACCTACATCCAGTGCCTGACCACCGTCATCAGGCAGGGAGGCCACCGAGTCGGTGAGCACCTGGAGAAGATCATCCCACTGGTGGTGAAGTTCTGCAGTGTGGAGGATGATGAACTGAGGGAGAACTGCTTTCAAGCCTTTGAAGCTTTTGTCCGCAGATGTCCGAAAGAAATGTCTCCTCACATCCCGACGGTGATTAAGCTGTGCTTGAAGTACATCACCCACGACCCCAACTACAACTACGATGCTGAAGACGACCAGGAGGAGTCCATGGACATCGGGAGTGGAGACGATGAAGAGACGGAATCTGATGATGAAtacagtgatgatgatgatatgagCTGGAAGGTGAGGCGCTCGTCAGTAAAGTGTCTGGAGGCGGTGATCAGCAGCCGGAGGGATCTGCTGGTGGAGCTTTACGGCTCGGTGTGCCCGACCTTAGTGTCACGCTTCAAGGAACGAGAGGAGAATgtaaaatctgacattttccTGGCCTTTGTGGCTTTAGTGAGGCAGACTAAACCCCCTCATGGCTCTGCACTGGATCCTGGAGCTAAGGAGGACCCAGCTGTTACTCTCTTAAAGAAACAGGTTCCCACAGTAATAAAGGCCTTACACAAACAGCTGAAAGAGAAAAGTATGAAGTCCAGGCAGGGCTGTTTCAGTATCCTCACAGAGATGGCCAATGTTCTCCCTGGAGCTCTAGGAGAACACATTCCTAATCTCATTCCAGGCATTGTGTACTCCCTCACAGACAAGTCCACCTCCTCCAACATGAAGATCGACGCTCTCGCCTTCCTCCACGTTCTCCTGTCCGGCCACACCCCGGAGGTCTTTCAGCCGCACATCAAAATCATCCTGCCGCCGGTTATTACCTGTGTTGAAGACCCTTTCTATAAAATCACGTCCGAGGCTCTGCAAGTAACTCAGCAGATATGCAGGATAATGCGTCCTCTGGAGAAACGGTCCTCGTCCTCGTTTGACGCAAAGCCCTACGTCAAGGAAGTCTTCGGCAGCACCTTGAAGAGGCTAAAAGCTTCGGATATCGATCAGGAAGTGAAGGAGAGGGCCATTTCCTGCATGGGCTACATTGTCAGTCACTTAGGCGACCAGCTAGGTGGCGATCTTCAGCCCACTTTGCAGATCTTTCTGGAAAGACTCAAGAACGAAATTACAAGACTTACGGCAGTGAAGACTTTGTCGCTTATTGCAGGATCTTCGCTTAAGATTGACCTAAGATCGATCTTGACCGAAGGAATCCCGATTCTTGGATCGTTCTTACGCAAGAACCAGCGCGCCCTTAAGCTGAACACTCTAACGGCCTTGAACATCATCGTCACCAACTACAGCGATTGTCTCAAACCTGCTATGATCGAGTCGGTGTTGAGCGAGTTACCTGCCTTGATCCAGGAGAACGATATGCACATATCTCAAATGGCTATTGGGCTTTTGACCTGCATGGCCAAAGTTTGCCCGTCCTCTTTAGGCAAAATTGGAGCCGCCATCTTGCCTGAAGTTCTCCACTTGGTGCACTCTCCATTACTGCAAGGCGGTGCCCTCAGTTCCATCGTTGAGTTCTTCCATGCTCTTGTCTTGACCAAGGCCAGCAATACAGGCTACAGCGACCTCATGAAAGCGTTGACCGGTCCTTTCTATAAGTCTAAATCGCCCGACTCCTTGTCCGTACACAGACAATCTTACTATTCTGTGGCGAAGTGTGTGGCGGCTCTGTCCTCTTCATGTCCCAAGGAAGCTTCTGGAACTGTCGGCAACTTCATCCAAGAGGTGAAGAACCAGAAGACGTCGGAGTCGGTCCGAATCCTGTCCTTCCTTTGCCTCGGGGAAGTGGGACGTTCCACAAACCTGGGAGGACACAAAGAGCTGAAGACCGTCATCATGGAGGCCTTCAGCTCCCCAAACGAGGAAGTGAAGTCCGCAGCTTCCTGTGCTCTTGGAAACATCTGCGTAGGAAACCTAGAGGAATACCTGCCGTTCCTGCTGAAGGAGATTGGCGCTCAGCCCAAGAGACAGTACCTGCTTCTCCATTCCCTGAAGGAAGTGATCAGTGCTTTGTCAGAGGAGAGTCTCAAGCCTCACGTGGAAAACATCTGGACGTTGCTTTTCAAGAACTGCGAGTGTGGGGAGGAGGGGACCCGCAATGTTGTGGCAGAATGTCTTGGCAAGCTGACGCTGGTGAATCCAGCTCTGCTTCTGCCCAGACTTAAGAAGCAGTTGTCATCAGGCTCTTCTCTGGCCCGCAGTACTGTCGTCACAGCCGTGAAATTCACCATCGTCGACCATCCTGTTCCCATAGACTCACTTCTTAAGGACAGCATTGGTGATTTCCTGAAAACCATCCAGGACCCTGACCTCAATGTGCGCCGGGTTGCCTTGGTCATGTTCAATTCAGCCGCTCATAATAAACCAGGCCTGATTCGTGGTCTGCTGACCTCAGTTCTGCCCAAGCTCTACAACGAGACGCAGATCAGGAAAGAGCTCATTCGTGAGGTGGAGATGGGTCCGTTTAAGCACACGGTGGATGATGGGTTAGATGTGCGTAAAGCAGCTTTCGAGTGCATGTACACTCTGCTGGACAGCTGCCTGGACGGTCTGGACATCTTTGAGTTTCTCAACCATGTGGAGGAAGGTCTTAAAGATCACTATGACATTCGGATGTTAACCTTCATCATGCTGGCCAGACTCGCCTCTTTGTGTCCGTCTGCTGTGGTACAGAGGCTGGACAGACTTGTGGAGCCTCTTAGAGCTACATGCACTACGAAGGTGAAAGCCGGATCAGTGAAGCAGGAGTTTGAGAAGCAGGAGGAGCTGAGGCGTTCAGCGATGCGCGCTGTGGCAGCACTTCTGTCCATCAGCGATGTGGAGAAGAGTCCAGTCATGGCAGACTTCGCCAACCAGATCAGAACCAACGCAGAGATGGCCACCATCTTCGAAAGCGTTCAGGGGGACCCCATCTCAGGGGCCGTGGAGTCTATGGACACCAGCTAGGACTTAAACTTGAGATAAAGTTGAGTTGTGAGTGAGCGTGTGTTTGAGAACTGCTGAATTGTGCAGAATTCTGTCAATAAACAGATTTCagttgtgataaaaaaaaaaatggtctgaGCAAGTTAACTCGAGTGCCATGGGTCAGAACAAAGGATGgagcaaatatttggcaacccaaaTTATTCATCacattaattatttgttttttttggcaaatcATTCTGGATGCCAAGTATTTGTGGAATGATAATTTAAAGCAAAtgaaaatgttacatttgtaATAAGTAATTAAATTTTAGTGCCTTCTAA

Function

symbol description
cand2 Predicted to be involved in SCF complex assembly and protein ubiquitination. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human CAND2 (cullin associated and neddylation dissociated 2 (putative)).

NR:

description
PREDICTED: cullin-associated NEDD8-dissociated protein 2

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682194.1 True 4150 mRNA 0.50 15 991934 1005603

Neighbor

gene id symbol gene type direction distance location
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding upstream 224477 728545 ~ 767457 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 344679 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 390927 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 406130 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 414032 569183 ~ 577902 (+)
LOC103042257 LOC108436685 coding downstream 7801 1013404 ~ 1026063 (+)
LOC103043017 NA coding downstream 22952 1028555 ~ 1038177 (+)
LOC103033530 LOC108436692 coding downstream 34519 1040122 ~ 1052816 (+)
LOC103033204 LOC108436691,LOC108255172,LOC107571036,LOC107557964,LOC793844 coding downstream 50048 1055651 ~ 1137686 (+)
dock3 dock3 coding downstream 140849 1146452 ~ 1358373 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding upstream 887 969485 ~ 991047 (+)
G186440 NA non-coding upstream 15784 939375 ~ 976150 (+)
G186436 NA non-coding upstream 86889 899941 ~ 905045 (+)
G186416 NA non-coding upstream 329706 661569 ~ 662228 (+)
G186410 NA non-coding upstream 363811 626712 ~ 628123 (+)
G186438 NA non-coding downstream 2220 1007823 ~ 1008883 (+)
G186458 NA non-coding downstream 82280 1087883 ~ 1094593 (+)
G186457 NA non-coding downstream 117943 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 384322 1389925 ~ 1390483 (+)
G186642 NA non-coding downstream 389810 1395413 ~ 1396643 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 453718 510575 ~ 538216 (+)
G186231 NA other upstream 876847 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1974894 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2386784 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4774288 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6071562 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6186551 7192154 ~ 7192226 (+)

Expression


Co-expression Network