LOC103043017


Basic Information

Item Value
gene id LOC103043017
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 1028555 ~ 1038177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682197.1
CATTTACCGCATTTCAGTTGCGTTTTGTTTTCACGCCCGTATTCCGGCCTTTAGCCTTATCCAATGACTAAGCAGGAAGGGGCGGGGCCTGTGTGGAAGCGGGTGGAGTAAGAAAAGCGTTTCTGCAGAAGTGAAACTTCAGCAGTGAGGAAAGTGAGCGCAGGATGGACAGAAGGCATCTGCTGAgTGATCAAGATGATGTTACGGGTCTGGCCTATCAACCTATGGTCCCTAATACAGGTCAGTGGACCGGAACCGAGGTCGAGCCCACTGCTCCTCCTGCAGTCCCTGGATATGAACATTTAGGCCCTGGATACAATGATGTTCCTCCTCCACCAATGGGATTCCAGCATCCACAGCCACCAACTACGCCCCCTACCACACAGTGGGAAATTCCAGCCATTTCTAAAGAGCTGGCCAATGAGGCGTTTGTTGAGTACGTCTCCAGCCACTGCTGCTACAGCAGGAAGCCGACCAAAGAGATGATCATATCTGACTTGGTTGCTATGAACACTTACAGGtatCGGCTGGAGACGTTCACCGAGTCGAGATCGACTGAATGGGCCTCTGAACCCTATAATGGTCAGTTAGTGGACGGTATGCCCGGTTTGGCTCCGGGCCCCTGGGACGTCTCTGTTTCGGCCCCTGCTCTGTTTCAGGACTCTGAAACTCACATTCGCGTCCCACATACAGCCTCTTTGAAGGGCTGCCACTCCTGCCTGAATCTCGGCAAGTCTGCGTGTAACCGATGTGTAACGTCTGGACGGGTtcagtgtgaggtgtgtggtggCTCGGGGATCACCGCGTCTCAGGAACGCTGTTCTGATTGTAGAGGACTCGGCAGAGTCAAGTGCACAGCCTGCTCAGGTGTCGGGTCAACCCCCTGCACAACCTGCCAGGGACGAGGACAGCTGCTCTGCTACATCAAGCTGAAAGTTCAGTGGCAAAACCATGTTTATGTGCAGGTGATGGATAAGCGTTCAGGACTTCCTGTTGAACATCTGGACTCTGTTAATGGAGAAACACTCCTTTCTGATATGAATACGATGGTCTATCCAGTCAGCAGTTTTCCGGTTGAGTCGGTGAACGCAGCGTCGAGGAAAGCCGTTCAGGAGCATCAGGCTCAGTTCACCGGCTCCTGCCGTATCCTACACCAGagGCAGACCATCGAGCTGATCCCCGTCACTCGTGTTCACTACACCTGGAAGGAGAAGACCTTCATCTACTTCGTGTACGGAGCCGAACACAGGGTCTTCACTAACGAATATCCCGCCAAGTGTTTCTGCTGCACcattacttaaacatttattacaacatgtacagtacaggccaaaagtttggacacaccttctctttttcaatgcg

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682197.1 True 1365 mRNA 0.52 13 1028555 1038177

Neighbor

gene id symbol gene type direction distance location
LOC103042257 LOC108436685 coding upstream 2492 1013404 ~ 1026063 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding upstream 22952 991934 ~ 1005603 (+)
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding upstream 261098 728545 ~ 767457 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 381300 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 427548 587222 ~ 601007 (+)
LOC103033530 LOC108436692 coding downstream 1945 1040122 ~ 1052816 (+)
LOC103033204 LOC108436691,LOC108255172,LOC107571036,LOC107557964,LOC793844 coding downstream 17474 1055651 ~ 1137686 (+)
dock3 dock3 coding downstream 108275 1146452 ~ 1358373 (+)
manf manf,LOC107691893,LOC107567190,LOC107592842,LOC107677041,LOC107750980 coding downstream 324474 1362651 ~ 1368260 (+)
rbm15b rbm15b coding downstream 333542 1371719 ~ 1378558 (+)
G186438 NA non-coding upstream 19672 1007823 ~ 1008883 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding upstream 37508 969485 ~ 991047 (+)
G186440 NA non-coding upstream 52405 939375 ~ 976150 (+)
G186436 NA non-coding upstream 123510 899941 ~ 905045 (+)
G186416 NA non-coding upstream 366327 661569 ~ 662228 (+)
G186458 NA non-coding downstream 49706 1087883 ~ 1094593 (+)
G186457 NA non-coding downstream 85369 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 351748 1389925 ~ 1390483 (+)
G186642 NA non-coding downstream 357236 1395413 ~ 1396643 (+)
G186637 pcbp4,LOC108436686 non-coding downstream 370946 1409123 ~ 1412311 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 490339 510575 ~ 538216 (+)
G186231 NA other upstream 913468 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1942320 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2354210 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4741714 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6038988 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6153977 7192154 ~ 7192226 (+)

Expression


Co-expression Network