LOC103030039 (pax7,pax7a,LOC108255053,LOC107701983)


Basic Information

Item Value
gene id LOC103030039
gene name pax7,pax7a,LOC108255053,LOC107701983
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4228840 ~ 4303455 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682266.1
CTCTCTGCCGTCCACCTCCAATCACTCATGAATGAAAACGCCATTTAACATTTCCTGCGCTTGGTCTGATTAGGACTGCGTGGGAGGGCAACgagtccagtgtgtgtgtgtttatgtgtgtgtatgagagtgtgtttCTTCCTCGCTGCTTAATCTCATTGGTCGCCTTTGTCCAGGCCCCGCCTCCTCTCTCTCAAAGCCAATAGCTGCCTCCCCCCCCACCCATATCTTGTTCCAAAGTTGGACCACTTTAACTCCCCCCAGCCATGGGCAAGAGCAGCTACGAGCACTAACACACCCCAcacttacttacacacacataaacacaaacacacacacttaaacagtTTACACTGCTGTCCTAAAAGCTGTGGTCCCAGTCCCCTCTGCCCTGCACTTTCCACTCCTCCCTGTTTCCCTTTCATcccaaaaaagaaaactcaCTTCCCCCTAATTTCCTGGGTGCTGTGTCCACTGCTGTGGCTGGACTTTCGTTTTTAGGCTTCTTTTTGGTGAAAAATCTGgatctgttgttgttttttttcttgcgaAGGCGAGACTGGACCTATCCGTGTAACTGCTTTTTTCCTCTCTggttcagtttatttttttctttttggagtAGCTGAAATGGCTACTTTACCAGGAACCGTTCCTCGTATGGTCCGGCCAGCACCGGGTCAGAACTACCCTCGCACCGGATTCCCACTGGAAGTGTCGACACCCTTGGGCCAAGGCCGCGTGAATCAGCTCGGCGGCGTTTTCATCAACGGCAGGCCGCTGCCCAACCACATACGCCACAAGATCGTAGAGATGGCGCACCACGGCATCAGGCCCTGTGTCATCTCCCGCCAGCTGCGCGTGTCCCACGGCTGTGTCTCTAAAATCCTGTGCCGCTACCAAGAAACCGGCTCCATTCGGCCAGGGGCCATCGGGGGAAGTAAGCCTAGGCAGGTGGCCACGCCAGACGTGGAGAAAAGGATCGAGGAATATAAGCGCGAGAACCCGGGAATGTTCAGCTGGGAGATTCGGGACAAGCTGCTGAAGGACGGGGTGTGTGACAGAGGCACGGTTCCTTCAGGTGAGGCCTCATCTGTGAGTTCCATTAGTCGGGTTTTGAGAGCGCGCTTTGGGAAGAAGGATGACGATGATGACTGTGATAAGAAAGATGAAGACGGAGAGAAGAAAACGAAGCACAGCATCGACGGGATCCTCGGGGATAAAGGTCACCGTACAGACGAGGGTTCGGACGTGGAGTCAGAGCCGGACCTGCCGCTGAAAAGGAAGCAGAGGCGCAGCCGCACCACCTTCACTGCTGAACAGCTGGAGGAGCTAGAGAAAGCCTTCGAGAGAACACACTACCCAGATATCTACACCCGAGAGGAGCTGGCCCAGAGAACCAAACTGACGGAGGCCCGTGTGCAGGTTTGGTTTAGCAACCGAAGAGCCAGATGGCGCAAGCAGGCCGGAGCCAATCAGCTGGCTGCTTTCAACCACCTGTTACCTGGAGGCTTCCCTCCAACTGGGATGCCAACTTTACCAACCTATCAGCTTCCAGAGACCACCTACCCCAGCACGACCCTTTCACAGGATGTCAGCAGTACATTGCATCGACCCCAGCCACTCCCACCTTCTTCCATGCACCAGGGTGGGCTCTCGGCCGACAGCAGCTCTGCTTACGGCCTCTCGTCCAATCGCCACACCTTCTCCAGCTACTCGGACACCTTCATGAGCCCCTCGGCTTCGAGCAACCACATGAACCCAGTCAGCAATGGCCTCTCCCCACAGGTGATGAGTATCCTGAGTAACCCCAGTGCCATGCCCACTCAGCCCCAGCACGACTTCTCCATCTCTCCACTCCACGGCAGCCTGGACTCCTCCAACCCCATCTCGGCCAGCTGCAGCCAGCGCTCTGACCCCATCAAGAGCGTGGACAGCCTGGCCTCCTCGCAGTCCTACTGCCCTCCCACCTACAGCGCCACTAGTTACAGCGTGGACCCCGTCACCGCCGGCTACCAGTACAGCCAGTACGGACAGAgtgcagTGGACTACCTGGCTAAGAACGTGAGTTTGTCCGCCCAGCGGAGGATGAAGCTGGGCGATCACTCCGCTGTCCTGGGACTTCTGCAGGTGGAGACAGGACAGGCCTACTGATCCCCACTGGACCCGACACAAGTGCTCATATTAACACACACAGCTCCATCTCGGACCAGTCTCGGACCAGCCCAACATCCTGGAAATCTGGGaaatcttttgaaaaaaaaaaaaaaaa
>XM_022682267.1
CGCTCTCTGCCGTCCACCTCCAATCACTCATGAATGAAAACGCCATTTAACATTTCCTGCGCTTGGTCTGATTAGGACTGCGTGGGAGGGCAACgagtccagtgtgtgtgtgtttatgtgtgtgtatgagagtgtgtttCTTCCTCGCTGCTTAATCTCATTGGTCGCCTTTGTCCAGGCCCCGCCTCCTCTCTCTCAAAGCCAATAGCTGCCTCCCCCCCCACCCATATCTTGTTCCAAAGTTGGACCACTTTAACTCCCCCCAGCCATGGGCAAGAGCAGCTACGAGCACTAACACACCCCAcacttacttacacacacataaacacaaacacacacacttaaacagtTTACACTGCTGTCCTAAAAGCTGTGGTCCCAGTCCCCTCTGCCCTGCACTTTCCACTCCTCCCTGTTTCCCTTTCATcccaaaaaagaaaactcaCTTCCCCCTAATTTCCTGGGTGCTGTGTCCACTGCTGTGGCTGGACTTTCGTTTTTAGGCTTCTTTTTGGTGAAAAATCTGgatctgttgttgttttttttcttgcgaAGGCGAGACTGGACCTATCCGTGTAACTGCTTTTTTCCTCTCTggttcagtttatttttttctttttggagtAGCTGAAATGGCTACTTTACCAGGAACCGTTCCTCGTATGGTCCGGCCAGCACCGGGTCAGAACTACCCTCGCACCGGATTCCCACTGGAAGTGTCGACACCCTTGGGCCAAGGCCGCGTGAATCAGCTCGGCGGCGTTTTCATCAACGGCAGGCCGCTGCCCAACCACATACGCCACAAGATCGTAGAGATGGCGCACCACGGCATCAGGCCCTGTGTCATCTCCCGCCAGCTGCGCGTGTCCCACGGCTGTGTCTCTAAAATCCTGTGCCGCTACCAAGAAACCGGCTCCATTCGGCCAGGGGCCATCGGGGGAAGTAAGCCTAGGCAGGTGGCCACGCCAGACGTGGAGAAAAGGATCGAGGAATATAAGCGCGAGAACCCGGGAATGTTCAGCTGGGAGATTCGGGACAAGCTGCTGAAGGACGGGGTGTGTGACAGAGGCACGGTTCCTTCAGTGAGTTCCATTAGTCGGGTTTTGAGAGCGCGCTTTGGGAAGAAGGATGACGATGATGACTGTGATAAGAAAGATGAAGACGGAGAGAAGAAAACGAAGCACAGCATCGACGGGATCCTCGGGGATAAAGGTCACCGTACAGACGAGGGTTCGGACGTGGAGTCAGAGCCGGACCTGCCGCTGAAAAGGAAGCAGAGGCGCAGCCGCACCACCTTCACTGCTGAACAGCTGGAGGAGCTAGAGAAAGCCTTCGAGAGAACACACTACCCAGATATCTACACCCGAGAGGAGCTGGCCCAGAGAACCAAACTGACGGAGGCCCGTGTGCAGGTTTGGTTTAGCAACCGAAGAGCCAGATGGCGCAAGCAGGCCGGAGCCAATCAGCTGGCTGCTTTCAACCACCTGTTACCTGGAGGCTTCCCTCCAACTGGGATGCCAACTTTACCAACCTATCAGCTTCCAGAGACCACCTACCCCAGCACGACCCTTTCACAGGATGTCAGCAGTACATTGCATCGACCCCAGCCACTCCCACCTTCTTCCATGCACCAGGGTGGGCTCTCGGCCGACAGCAGCTCTGCTTACGGCCTCTCGTCCAATCGCCACACCTTCTCCAGCTACTCGGACACCTTCATGAGCCCCTCGGCTTCGAGCAACCACATGAACCCAGTCAGCAATGGCCTCTCCCCACAGGTGATGAGTATCCTGAGTAACCCCAGTGCCATGCCCACTCAGCCCCAGCACGACTTCTCCATCTCTCCACTCCACGGCAGCCTGGACTCCTCCAACCCCATCTCGGCCAGCTGCAGCCAGCGCTCTGACCCCATCAAGAGCGTGGACAGCCTGGCCTCCTCGCAGTCCTACTGCCCTCCCACCTACAGCGCCACTAGTTACAGCGTGGACCCCGTCACCGCCGGCTACCAGTACAGCCAGTACGGACAGAgtgcagTGGACTACCTGGCTAAGAACGTGAGTTTGTCCGCCCAGCGGAGGATGAAGCTGGGCGATCACTCCGCTGTCCTGGGACTTCTGCAGGTGGAGACAGGACAGGCCTACTGATCCCCACTGGACCCGACACAAGTGCTCATATTAACACACACAGCTCCATCTCGGACCAGTCTCGGACCAGCCCAACATCCTGGAAATCTGGGaaatcttttgaaaaaaaaaaaaaaaa
>XM_022682268.1
TAGCGCGCTCTCTGCCGTCCACCTCCAATCACTCATGAATGAAAACGCCATTTAACATTTCCTGCGCTTGGTCTGATTAGGACTGCGTGGGAGGGCAACgagtccagtgtgtgtgtgtttatgtgtgtgtatgagagtgtgtttCTTCCTCGCTGCTTAATCTCATTGGTCGCCTTTGTCCAGGCCCCGCCTCCTCTCTCTCAAAGCCAATAGCTGCCTCCCCCCCCACCCATATCTTGTTCCAAAGTTGGACCACTTTAACTCCCCCCAGCCATGGGCAAGAGCAGCTACGAGCACTAACACACCCCAcacttacttacacacacataaacacaaacacacacacttaaacagtTTACACTGCTGTCCTAAAAGCTGTGGTCCCAGTCCCCTCTGCCCTGCACTTTCCACTCCTCCCTGTTTCCCTTTCATcccaaaaaagaaaactcaCTTCCCCCTAATTTCCTGGGTGCTGTGTCCACTGCTGTGGCTGGACTTTCGTTTTTAGGCTTCTTTTTGGTGAAAAATCTGgatctgttgttgttttttttcttgcgaAGGCGAGACTGGACCTATCCGTGTAACTGCTTTTTTCCTCTCTggttcagtttatttttttctttttggagtAGCTGAAATGGCTACTTTACCAGGAACCGTTCCTCGTATGGTCCGGCCAGCACCGGGTCAGAACTACCCTCGCACCGGATTCCCACTGGAAGTGTCGACACCCTTGGGCCAAGGCCGCGTGAATCAGCTCGGCGGCGTTTTCATCAACGGCAGGCCGCTGCCCAACCACATACGCCACAAGATCGTAGAGATGGCGCACCACGGCATCAGGCCCTGTGTCATCTCCCGCCAGCTGCGCGTGTCCCACGGCTGTGTCTCTAAAATCCTGTGCCGCTACCAAGAAACCGGCTCCATTCGGCCAGGGGCCATCGGGGGAAGTAAGCCTAGGCAGGTGGCCACGCCAGACGTGGAGAAAAGGATCGAGGAATATAAGCGCGAGAACCCGGGAATGTTCAGCTGGGAGATTCGGGACAAGCTGCTGAAGGACGGGGTGTGTGACAGAGGCACGGTTCCTTCAGTGAGTTCCATTAGTCGGGTTTTGAGAGCGCGCTTTGGGAAGAAGGATGACGATGATGACTGTGATAAGAAAGATGAAGACGGAGAGAAGAAAACGAAGCACAGCATCGACGGGATCCTCGGGGATAAAGGTGAGTGA

Function

symbol description
pax7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within developmental pigmentation; regulation of xanthophore differentiation; and wound healing. Located in nucleus. Is expressed in several structures, including central nervous system; muscle; neural crest; neural tube; and post-vent region. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma. Orthologous to human PAX7 (paired box 7).
pax7 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; chordate embryonic development; and positive regulation of nitrogen compound metabolic process. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in alveolar rhabdomyosarcoma.

NR:

description
PREDICTED: paired box protein Pax-7 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09381 PAX3_7; paired box protein 3/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682266.1 True 2272 mRNA 0.55 9 4228840 4303448
XM_022682267.1 False 2259 mRNA 0.55 9 4228840 4303450
XM_022682268.1 False 1225 mRNA 0.53 4 4298871 4303455

Neighbor

gene id symbol gene type direction distance location
park7 park7,LOC107657982,LOC107701995 coding downstream 57013 4162390 ~ 4171827 (-)
LOC107196799 LOC108431625,LOC107706545 coding downstream 312064 3908371 ~ 3916776 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding downstream 321562 3902392 ~ 3907278 (-)
LOC111195357 LOC107706545 coding downstream 326809 3892521 ~ 3902031 (-)
LOC103032581 iffo2,LOC108254735 coding downstream 351527 3830928 ~ 3877313 (-)
errfi1 LOC108413607 coding upstream 70947 4374402 ~ 4384238 (-)
slc45a1 slc45a1,LOC107654425 coding upstream 234847 4538302 ~ 4559799 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 280805 4584260 ~ 4611730 (-)
LOC103025299 NA coding upstream 507228 4810683 ~ 4824075 (-)
LOC103024243 NA coding upstream 539777 4843232 ~ 4857309 (-)
G187198 NA non-coding downstream 28815 4199784 ~ 4200025 (-)
G187177 NA non-coding downstream 197398 3991972 ~ 4031442 (-)
G187172 NA non-coding downstream 200282 3942496 ~ 4028558 (-)
G187168 NA non-coding downstream 341792 3884904 ~ 3887048 (-)
G187167 NA non-coding downstream 345725 3882857 ~ 3883115 (-)
G187247 NA non-coding upstream 15950 4319405 ~ 4319687 (-)
G187248 mrps16,LOC107712960 non-coding upstream 16325 4319780 ~ 4323811 (-)
G187243 NA non-coding upstream 52004 4355459 ~ 4410485 (-)
G187265 NA non-coding upstream 133120 4436575 ~ 4436896 (-)
G187330 tas1r3 non-coding upstream 180059 4483514 ~ 4483833 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 67886 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 449120 3778014 ~ 3779720 (-)
G187154 NA other downstream 453997 3765863 ~ 3774843 (-)
G187156 NA other downstream 473163 3749815 ~ 3755677 (-)
G186673 NA other downstream 2838353 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 670773 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 1189957 5493412 ~ 5505747 (-)
svbp svbp other upstream 1215338 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2674196 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2885161 7188616 ~ 7193252 (-)

Expression


Co-expression Network