slc45a1 (slc45a1,LOC107654425)


Basic Information

Item Value
gene id slc45a1
gene name slc45a1,LOC107654425
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4538302 ~ 4559799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682271.1
gggagagtCTGGGAGAGCcgaggaggagaagaaagaggagcaggaggaggaggaggagaaacagAGCAGCAGGATGAAGAGCAAAGGATGGACGATAAGAGGCTGAGACCATGAGGACTGCAGCACCAGAGACCGAaccgagagggagagagcagaAGACCCGTGAAGACCCCCCGGCTGGTGGTCGGACCCTGCAGGGCTGATGGGCAGAGAGCTCGCGGAGAATTTACCAGCGCGACCATGATGTCCTCTCCTGGAATGGGCACGCCCAGCGATCCCCTCCTGGCCAGTCCGGGAGGGGACCGGCTCGGGACATCCCAGGACGCCGCCTGGAGGCCGACCCTGTCCAAAACGTCCAGCTTTCCAACGTCCACCACGCGCCACCTCAGCCACCGAGCCAACAACTTCCAGAGGCACCCCAAACGGAGAAAGCTGATCCGGCCCTCGCCCCCTCCACCACCCAACACGCCCTGCCCACTGGACCAGCTGGACCTGAGCGAGCTGCCCCCCCGCCGCACCTTCCCCGAGCTCCTCTTTAACGGCTGCATTCTGTTCGGCATTGAGTTCAGCTACGCTATGGAGACGGCCTACGTCACTCCAGTGCTTCTTCAGATGGGCCTTCCGGATCAGTTCTACAGCCTTGTGTGGTTCATTAGTCCGATATTAGGGTTCCTGCTCCAGCCCATCCTCGGAGCGTGGAGCGATCGCTGCACGTCGCGCTTTGGTCGCCGGAGGCCTTTTATCCTCGCCTTGGCAATCGGCGCTCTGATGGGTCTAACGCTGGTGTTAAATGGGCGGGACATCGGCTCAGCGGTGGCAGACACAGCCGTCAATCACAAGTGGGGCATTGTGCTGACTGTGTGCGGCGTGGTCCTGATGGACTTCAGTGCGGACTCAGCTGATAACCCCAGCCACGCCTACATGATGGACGTGTGCAGTCCAGAAGATCAGGACAGAGGGCTGAACATTCACGCACTACTGGCAGGTCTGGGCGGCGGGTTCGGCTACATTGTGGGTGGAATCAACTGGGACCACACTGAGTTTGGCAGGTCCATGGGCGGTCAGCTTCGGGTCATCTACATGTTCACCAGCATAACACTTATAGCCACGACAGCTATGACCCTGACTAGCATCCCAGAACGACCTCTCATTCAGAGCCAACCTCAGAACAAGAACTCCAGAAACCTGAAGAGCCCGAACCTCCCCCTGCCACCGTCCCCGCCACCTCCTGCCGGAGCCGTCACCCAccaggaggaggacgaggaggaggaCGGCCTCTACAGCTACCAGTTTTCTGGCCGCAGGTACCCGGATTCCCTCGGCCACTCGTGCAGCGCCAACGCTAGGCTCTGCGCGGGTCTCAACAGCCCCATCTCCCCCCTCAGCCCGTTAACACCCAAATACGGCAGCTTCATCAGCCGAGACAACACTTTAACCGGCATTAACGAGTTCGCCTCATCCTTAGGAACGTCATACATAGACAGTGTGCTGATAGACTGCTACACTGGACAGCAAACACCTGTACCACTGGAACCTGAGAATATAGCCCCGCCCCTTCCTCCAGGAGACACACCTCCCGTTCAGGTGTTGCAGCCAATGGACGTGCCCACGCAGACTGAAGATTCACAGCAAAGGGAATCAATACAGCCGAACGGAGGCCTGCAGGGGACTGAAACGCTGCAGGCTGTGGAAGAAGTCCAAGCCATTGAACATTTGGAGCCCAGCGAGGCTCTGCAGGCCGGGTCTCAGCGGGGCAGCACCTCAGGGATTCTGAAACGCCCTCAGAGCCTCGCCTTAATGGAGGACCCGCTGATTGTCCCCAGTACTGGCCTGGAGAATGGTCGCAGACGCACCGTAACTTTCAGCCAGCAGGTGGCGAACATCCTCCTGAACGGTATGCGGTACGACAGTAACCTCAGCGACAGCACAGAAACGATAGACACTCAGATGTCTATAAGGCTGCTGTGCATCGCCATCTACAGGATGCCCCCGTCACTGCGCAGCCTGTGCACCAACCATTTTCTGGGCTGGCTGTCGTTCGAGGGGATGCTGCTTTTCTACACTGATTTTATGGGGGAGGTTGTGTTCGAGGGGGATCCCAAAGCGCCCCACGACTCTGAGGCCTATCAGCGCTACAACGCTGGGGTAACCATGGGCTGCTGGGGCATGTGCATCTATGCATTTAGTGCTGCTTTTTATTCAGCCATTCTGGAGAAGCTGGAGGAGCGGTTCTCATTGCGTACGCTGTATTTCTTCGCCTACCTGGCGTTCGGTCTGGGCACGGGCCTGGCCACTCTCTCCAACAACCTGTATgtggttctgtctctgtgtgtgaccTATGGAGTGCTCTTCTCCTCACTCTGCACGCTGCCTTACTCACTGCTCTGTGAGTACTACCAGAGTCCACAGTTCTGTGGCTCGTCAGAGGATGGGACCAGGCGGGGCATGGGGGTGGACATCTCTCTGCTCAGCTGCCAGTACTTCCTGGCCCAGATTCTGGTCTCGGTGGCGATGGGCCCTCTGACCTCGCTGGTGGGCGGGGCCCAGGGCGTGATGTACTTTGCCAGTCTGATGTCATTTGTAGGCTGCCTGTACTCCTCGCTGTGTGTGGTGTACCAGCTGCCACCTCCGGAGGGTGAGCACCCGCAGAGTGAGAGCCAGCCACTACTGGCAGAGCGGACGGTGAGACTGGGGTGTGAGTGACTACAGGGGTCCAATAACTGAAGAAACGGGCCAAACCACCCTTTTTCGGTTTGGCGGGAAGGTGCAGGAGGTCAGGAAGACACAGTGAGAACAGTGACTAACCAGGACTCTGCTCAGCACTCTGATAGGAGCACTGCTGGCAAGCCAGGGCCTGGTGATCAGGAGCGGGGCTGTTCTCTTCATGGCCACTAGGAGACAGAACTTCATGCTTTTCACTGGAAGCGGCGCAAAATGTCTACAAACTGCTTTTGCTTGGAGGCCGAGTTTATCTAAAGTTATCTGGTCGAGTTTGTGCTCCTGGGCTGAGTTTAACTCTGATATCCAGCTTTTTAAAGACTGCTTTGGCTATTTAAAGGGAAATTCCATGGATTTGTAACAAATTTAGCACAAggatttctattattgtagcttttttttttcaatcttaAAAATTACCAGTGAACAAGTCAACATAAGGTTTTGTATTTGGTGTTTTAGCCAAGTATGTGCTGCCTCATATCGCCTTGCATGTATTTTTGTAACATCTTGGGGCAAAAGCTTTCTCTGAAATAGAAATAATACCACAACTCAGTATCTCATGCTTATTCAGATTAGTTATGTCCCATACATCTTTAAAATTAGTCAGTTATCTGAATCCCATTACCATCACTGTGAACAGGCACATTTATCAAATCATAGACAGTTTCAACAAATGAGTGAAATTCCGCTTTAAACCAGCCTGGGAAACAAAATCTGATCGATAACTTCTAAACATCTGGCCTTCATAAAACATTCAATCCAAACAAATAAAAGCTTCTAAATCCATTACAA
>XM_022682272.1
gggagagtCTGGGAGAGCcgaggaggagaagaaagaggagcaggaggaggaggaggagaaacagAGCAGCAGGATGAAGAGCAAAGGATGGACGATAAGAGGCTGAGACCATGAGGACTGCAGCACCAGAGACCGAaccgagagggagagagcagaAGACCCGTGAAGACCCCCCGGCTGGTGGTCGGACCCTGCAGGGCTGATGGGCAGAGAGCTCGCGGAGAATTTACCAGCGCGACCATGATGTCCTCTCCTGGAATGGGCACGCCCAGCGATCCCCTCCTGGCCAGTCCGGGAGGGGACCGGCTCGGGACATCCCAGGACGCCGCCTGGAGGCCGACCCTGTCCAAAACGTCCAGCTTTCCAACGTCCACCACGCGCCACCTCAGCCACCGAGCCAACAACTTCCAGAGGCACCCCAAACGGAGAAAGCTGATCCGGCCCTCGCCCCCTCCACCACCCAACACGCCCTGCCCACTGGACCAGCTGGACCTGAGCGAGCTGCCCCCCCGCCGCACCTTCCCCGAGCTCCTCTTTAACGGCTGCATTCTGTTCGGCATTGAGTTCAGCTACGCTATGGAGACGGCCTACGTCACTCCAGTGCTTCTTCAGATGGGCCTTCCGGATCAGTTCTACAGCCTTGTGTGGTTCATTAGTCCGATATTAGGGTTCCTGCTCCAGCCCATCCTCGGAGCGTGGAGCGATCGCTGCACGTCGCGCTTTGGTCGCCGGAGGCCTTTTATCCTCGCCTTGGCAATCGGCGCTCTGATGGGTCTAACGCTGGTGTTAAATGGGCGGGACATCGGCTCAGCGGTGGCAGACACAGCCGTCAATCACAAGTGGGGCATTGTGCTGACTGTGTGCGGCGTGGTCCTGATGGACTTCAGTGCGGACTCAGCTGATAACCCCAGCCACGCCTACATGATGGACGTGTGCAGTCCAGAAGATCAGGACAGAGGGCTGAACATTCACGCACTACTGGCAGGTCTGGGCGGCGGGTTCGGCTACATTGTGGGTGGAATCAACTGGGACCACACTGAGTTTGGCAGGTCCATGGGCGGTCAGCTTCGGGTCATCTACATGTTCACCAGCATAACACTTATAGCCACGACAGCTATGACCCTGACTAGCATCCCAGAACGACCTCTCATTCAGAGCCAACCTCAGAACAAGAACTCCAGAAACCTGAAGAGCCCGAACCTCCCCCTGCCACCGTCCCCGCCACCTCCTGCCGGAGCCGTCACCCAccaggaggaggacgaggaggaggaCGGCCTCTACAGCTACCAGTTTTCTGGCCGCAGGTACCCGGATTCCCTCGGCCACTCGTGCAGCGCCAACGCTAGGCTCTGCGCGGGTCTCAACAGCCCCATCTCCCCCCTCAGCCCGTTAACACCCAAATACGGCAGCTTCATCAGCCGAGACAACACTTTAACCGGCATTAACGAGTTCGCCTCATCCTTAGGAACGTCATACATAGACAGTGTGCTGATAGACTGCTACACTGGACAGCAAACACCTGTACCACTGGAACCTGAGAATATAGCCCCGCCCCTTCCTCCAGGAGACACACCTCCCGTTCAGGTGTTGCAGCCAATGGACGTGCCCACGCAGACTGAAGATTCACAGCAAAGGGAATCAATACAGCCGAACGGAGGCCTGCAGGGGACTGAAACGCTGCAGGCTGTGGAAGAAGTCCAAGCCATTGAACATTTGGAGCCCAGCGAGGCTCTGCAGGCCGGGTCTCAGCGGGGCAGCACCTCAGGGATTCTGAAACGCCCTCAGAGCCTCGCCTTAATGGAGGACCCGCTGATTGTCCCCAGTACTGGCCTGGAGAATGGTCGCAGACGCACCGTAACTTTCAGCCAGCAGGTGGCGAACATCCTCCTGAACGGTATGCGGTACGACAGTAACCTCAGCGACAGCACAGAAACGATAGACACTCAGATGTCTATAAGGCTGCTGTGCATCGCCATCTACAGGATGCCCCCGTCACTGCGCAGCCTGTGCACCAACCATTTTCTGGGCTGGCTGTCGTTCGAGGGGATGCTGCTTTTCTACACTGATTTTATGGGGGAGGTTGTGTTCGAGGGGGATCCCAAAGCGCCCCACGACTCTGAGGCCTATCAGCGCTACAACGCTGGGGTAACCATGGGCTGCTGGGGCATGTGCATCTATGCATTTAGTGCTGCTTTTTATTCAGCCATTCTGGAGAAGCTGGAGGAGCGGTTCTCATTGCGTACGCTGTATTTCTTCGCCTACCTGGCGTTCGGTCTGGGCACGGGCCTGGCCACTCTCTCCAACAACCTGTATgtggttctgtctctgtgtgtgaccTATGGAGTGCTCTTCTCCTCACTCTGCACGCTGCCTTACTCACTGCTCTGTGAGTACTACCAGAGTCCACAGTTCTGTGGCTCGTCAGAGGATGGGACCAGGCGGGGCATGGGGGTGGACATCTCTCTGCTCAGCTGCCAGTACTTCCTGGCCCAGATTCTGGTCTCGGTGGCGATGGGCCCTCTGACCTCGCTGGTGGGCGGGGCCCAGGGCGTGATGTACTTTGCCAGTCTGATGTCATTTGTAGGCTGCCTGTACTCCTCGCTGTGTGTGGTGTACCAGCTGCCACCTCCGGAGGGTGAGCACCCGCAGAGTGAGAGCCAGCCACTACTGGTGCACATTTAAATTTAACGCTCTTTGTCTTATACTGCACttacttacacatacacacattttactCACCTGTACACATAAACTCATGAACATTTGATCACATTAGACACGCacagaaatgttttttcactgtcttaattatttatatcacTTCACTGAGATTTTGTAAACTTTTCCACACACTTTAAGATGCATCatatgctcacacacacatacacacacacacacacactcacaaccaTCAGCCTGCATTTCCTCTCCCACTTCTGTTCAGCCAAACATCATGCAATGTTATATGAgatatgtgagagtgtgtgtcctGCTCTGTCTGAGAGATTCAATGAGAAAAAATAGCAACATTCTGAATCCAAAGATACTACAGACCCCCAATAACCTGAGGGGTTTGACTGATGGGTTGCCAAATGAATCCAAAACCCACTCTCACATACCTAAATGCAAGGGTACCCTCTGTTTCGGTGAACTCGCCAATGGACTGTGTCAAGATGTCAGTTGTATATTTGCATGTGAATCAGCACTAATGCCTTACTGTAGGCCTCTGTTTCTGACTGTGTGACAGTAAAACAGAgaatgtgcgtgtgtgtcgtAACGTTTTCTTAAGATACGCTAGCATTCGGCTAGTTATGCTGTAATTAAGCCTTAagtcacaaaacacacaaacacacacagacacacacacacacagtaaaacacacttcactagCATTATGCTGTAGGTAAGCCTTAAaccacatattcacacacaaaGTCATTATTATACACACTGCACCTAAATGAATTAGCCTAGTTGGGGATgcagtaatttcagtttgtgGACAGACCATCTAATAAATTCAATCAGTTACTTTAACCATAAAcaaagcaatgctccaaaaataGTAGAAAGCTTTTTCCCTGGACAGCAGAAACATATACTCCAACAAATGCAGGACAACCTCTTTTTAATATCCTTAATTTAGGAAGAAACGAATGAAAATGTATTagcaagtgtcccaatacttttgtccacataatGTAGTTGGACTATGCTGGCTGAATTAGACTAGGCTGTTCAGGCTTTAATCTGACACACACaattattcacacacacacacacacactgcatcaatAATTAAGCTAGTTACGATAGAGAGTTAATTGAATTGACTGCTTGGGTTTAAAGTTGCATAAAGGGGCCTAAAACTAGCATTTAATGTGTTATCTGTCATATTCTGCTGTATTCTGTATTACATTCACTCCCTTTAGCCTTGTcatgttttcatttcatttaaacgTTTTCTCACTACAATACCCAGCATGCATTAGGTAAATGCCCAATCATATACAGTTACTGTCTGCTAATGTAGCCACTGGTGTATTAGCTAATAAATAATGATGTGATATTTGGCCTCTTATCAGGAATAAACAACACATTTTAGGTAGCGTTGA

Function

symbol description
slc45a1 Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).

NR:

description
proton-associated sugar transporter A-like isoform X3

GO: NA

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682271.1 False 3513 mRNA 0.55 11 4538302 4559799
XM_022682272.1 True 4116 mRNA 0.51 9 4541029 4559799

Neighbor

gene id symbol gene type direction distance location
errfi1 LOC108413607 coding downstream 154064 4374402 ~ 4384238 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding downstream 234847 4228840 ~ 4303455 (-)
park7 park7,LOC107657982,LOC107701995 coding downstream 366475 4162390 ~ 4171827 (-)
LOC107196799 LOC108431625,LOC107706545 coding downstream 621526 3908371 ~ 3916776 (-)
LOC103031836 akr7a3,LOC108431624,LOC108255199,LOC108431625,LOC107385281,LOC103363212 coding downstream 631024 3902392 ~ 3907278 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 24461 4584260 ~ 4611730 (-)
LOC103025299 NA coding upstream 250884 4810683 ~ 4824075 (-)
LOC103024243 NA coding upstream 283433 4843232 ~ 4857309 (-)
LOC103024768 LOC108441423 coding upstream 340216 4900015 ~ 4934604 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding upstream 386773 4946572 ~ 4972846 (-)
G187335 LOC103028044 non-coding downstream 367 4492577 ~ 4537935 (-)
G187344 NA non-coding downstream 22778 4514930 ~ 4515524 (-)
G187331 NA non-coding downstream 51320 4486777 ~ 4486982 (-)
G187330 tas1r3 non-coding downstream 54469 4483514 ~ 4483833 (-)
G187265 NA non-coding downstream 101406 4436575 ~ 4436896 (-)
G187339 fam213b,LOC107702003,LOC107582414,LOC107712975 non-coding upstream 509 4560308 ~ 4565849 (-)
G187340 NA non-coding upstream 14233 4574032 ~ 4576639 (-)
G187353 NA non-coding upstream 68127 4627926 ~ 4632465 (-)
G187365 NA non-coding upstream 155816 4715615 ~ 4718668 (-)
G187375 NA non-coding upstream 241309 4801108 ~ 4801901 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 377348 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 758582 3778014 ~ 3779720 (-)
G187154 NA other downstream 763459 3765863 ~ 3774843 (-)
G187156 NA other downstream 782625 3749815 ~ 3755677 (-)
G186673 NA other downstream 3147815 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 414429 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 933613 5493412 ~ 5505747 (-)
svbp svbp other upstream 958994 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2417852 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2628817 7188616 ~ 7193252 (-)

Expression


Co-expression Network