LOC103021734 (dnajc11,LOC107654442,LOC107751176,LOC103038967)


Basic Information

Item Value
gene id LOC103021734
gene name dnajc11,LOC107654442,LOC107751176,LOC103038967
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5472482 ~ 5486413 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682298.1
CGGTGTCTGCAGGCAGGGGGAGCGGGGGAGCGGCGGAAACATGGCAGCTGCCTTGGAAAATGAATTAGAAATAGAGAACGAGGATTATTATTCCCTCCTGAACGTGAGCAGAGAGGCGACTCAAGAGGAGCTGAAGTCCTCGTACCGCCGGCTCTGCATGCTCTACCACCCAGACAAGCACAGAGACCCTGAGCTCAAGAGACAGGCAGAGGAGCTCTTCAACCTCGTCCACCAAGCTTATGAAGTCCTTAGTGACCCCCAGTCTCGAGCCATATATGACATTTTTGGGAAGAAAGGGCTGGAGGTGGAAGGATGGGAGatggTGGAGAGGAAGCGGACCCCTGCTGAGATCAGGGAGGAGTACGAGCGCCTGCAGAGGGACAGGGACGAAAGGAGGCTACAGCAGAGGACCAATCCCAAGGGCACCATAAGTGTGGGCATAGATGCCACAGATCTGTTTGACCGCTATGAAGAGGATTTTGAGGAAATGCCAGGAGGAGGATTCCCACACATTGAGATCAACAGGATGCACATATCCCAATCTATAGAGGCTCCCTTAACCACCACAGACACGGCCGTCCTCTCCGGCTCTCTGACCACACACAACGGCAATGGCGGAGGTAATATCAACCTGTGTTTGCGACGGGTCACCTCTACAAGGGGCTGGGGAGAGCTGGAGTTTGGAGCAGGAGATATTCGAGGGCCTCTTTTTGGAATGAAAGTCTTCCAAAATATAACAGCACGCTGTTTTGTTACTGCTCAGTGCGGTATGCAGTTTTCATCTCGTGGCGTGCGGCCCAATGCCAGCACCATGATGGCTCGGCACCTGGACCAGAACACCATGGGTTACCTGCAGTGGCGCTGGGGCACTGAATCAGCCATGACCACCAGCATCGTCCGAGACACCAAGACCAGCCATTTCACCATGGCTTTACAGCTCGGCGTTCCCCATTCTTACCTGATGATGAGCTATCAGTACAAATTTCAAGATGAAGACCAGACCAAGGTCAAGGGTTCTGTCAAAACCGGCTTCTTTGGAACAGTGGTGGAATACGGTGCAGAGAGGAAGATCAGCAGGCACAGTGTGTTGTCAGCAACTGTCAGCATTGGGGTACCCCAAGGAGTCTCCCTCAAAATCAGGCTGAACCGAGCCAGTCAGACCTACCTCTTTCCCATTCACCTAACAGACCAAGTCTTACCCAGCGCTGTGTTTTACGCCACTGTGGGCCCTCTGGTCATCTATTTTGCAGTCCAGAAACTGATAATCACACCTTACGTACGCGCCCAGAAGGAACAgGAGCTGGAGAAGCACAGAGTGGACTCTGCTTCAGACATTGCCAAGAAGAAGCACGAGGCCGAATCAGCAGTGGTTCTAATGCAGGAGTCAGTGCGGAGGATAATTGAGGCAGAGGAGTCCAAAATGGGTCTCATCATCTTAAATGCCTGGTATGGCAAATTTGTGACCGACAACAGCCAAAAACAGGAGCGGGCAAAGGTTATAGACGTGACCGTGCCCCTGCAGTGCCTGGTGAAGGATTCCAAACTCATCCTCACTGAGGCTTCAAAGGCTGGTCTGCCTGGGTTCTATGACCCGTGTGTCGGAGAGGAGAAGAGCCTGAAGTTGCTGTACCAGTTCCGGGGCGTCATGCACCAAGTGCTGTCTGGGGACACCGAGGCCCTTAGGATACCCAAGCAATCACACAGGATAGATGCAGAGACATAGACGCAGAGTCTTCCTCACAGATGGACAGATTCGACAGACAGATACTATACCGGGACGGATGaaaggacagacagacatggAGGTGAAGATAAATCTGTGGGCTGTCCGCTTCATTTCGTCTCATGTTGTTGAGTATGTGTAAACCCAGTTCACCTTTCTTCTTTACCCAACCCCAACCCCCCCCTTGGTGTTCTATAACATATCCATGTTCACTAGACCACAGAACAGCAGTCAGCGTACGCGTCCGGGGTTAGCGTGAGTGTAGCTGTTACCTGCTTCATGCCGGAGCGTGGAGCGATTCGTCCTTTTACTTTACTTCTCATTGTACTGTCTGTCAGATGAGAGCATCGGTCCAGTTTTGTTCATTTGCTTATTGGTTCAATAGCTCATTGGCAGCCTCATTGGTGGGAGTGATGTAACAAGAATTGTGAGAATTGTGTGCAGATGACTACGATCTGAAGATGTGGCCTATAATAGGCCACCCAGACTGCGGCTGTGCTCTACAGTTACAAAGCTATGCAATAAGAGAACCCTCAGATATagttacagtggtgtgaaaaagtatttgcccccctacagatttctttcttttttttcattttttttttctt

Function

symbol description
dnajc11 Involved in cristae formation. Located in mitochondrial outer membrane and nuclear speck. Part of MIB complex. Colocalizes with MICOS complex and SAM complex.

NR:

description
PREDICTED: dnaJ homolog subfamily C member 11 isoform X1

GO: NA

KEGG:

id description
K09531 DNAJC11; DnaJ homolog subfamily C member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682298.1 True 2334 mRNA 0.51 16 5472482 5486413

Neighbor

gene id symbol gene type direction distance location
LOC103023081 LOC108441425 coding upstream 532417 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 577441 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 588116 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 602693 4859869 ~ 4869789 (+)
LOC103024549 LOC103024549,LOC108441419,LOC107756648,LOC107654396,LOC107592863,LOC107582410,LOC107654432 coding upstream 630717 4826094 ~ 4841765 (+)
fbxo2 NA coding downstream 21895 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 238930 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 279036 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 331571 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 660272 6146685 ~ 6147519 (+)
LOC111195360 NA non-coding upstream 468470 4991541 ~ 5004012 (+)
G187409 NA non-coding upstream 483255 4978384 ~ 4989227 (+)
G187399 NA non-coding upstream 522832 4941025 ~ 4949650 (+)
G187400 NA non-coding upstream 599704 4872365 ~ 4872778 (+)
G187307 NA non-coding upstream 670576 4801106 ~ 4801906 (+)
G187473 NA non-coding downstream 675 5487088 ~ 5487811 (+)
G187472 NA non-coding downstream 2547 5488960 ~ 5489830 (+)
G187471 NA non-coding downstream 3672 5490085 ~ 5491257 (+)
G187475 NA non-coding downstream 8057 5494470 ~ 5495414 (+)
G187477 NA non-coding downstream 12691 5499104 ~ 5501876 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2077639 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2470467 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4377145 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4934266 510575 ~ 538216 (+)
G186231 NA other upstream 5357395 107396 ~ 115087 (+)
p3h1 NA other downstream 293478 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1590752 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1705741 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2625590 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2770383 8256796 ~ 8271712 (+)

Expression


Co-expression Network