cdk18 (cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687)


Basic Information

Item Value
gene id cdk18
gene name cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6395390 ~ 6502396 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682308.1
TCCACTTCACGCCTTCTAAATAAGACGCGTCCAGTTGTGGATTATCTGCGTCTGCTGCCACAGAGCTGGAGGCCCCCACCCCCCCGCCACCGGCGCccgcctctccctctctccctgcctctgcctctctctctctctctctccctctctctctccctctctctctcactggcaGCAGTGCAGCGAGAGACGGGCTCCTGCTTCTCTCCCGCAGTCCTCTCCACTACTGAACTCTGGGCTTGaagaaatgaacaaaatgaaGAACTTCAAGCGCCGTTTCTCACTGTCCGTGCCAAGAACCGAGACGATAGAGGAGAATGAGTTCACAGAGCAGATAAACCAGCTCAACATTAGACGGAATGAAGaTATGGTACCAAACAGCCTGGGCTTGCACACCTTACACCCGGAGGCCAGTCCAGTGGGCTCAGACCCTCAGGCCCCATCTCCTACTCAGCTGCACTACCGCAACAAAGTTCAGCACCGTCGATTCTCCATGGAGGATGTCAGCAAGCGGATGTCTTTGCCTATGGACATTCGCCTGCCACCCGAGTTCCTGAAGAAGCTGCAGATGGAGAGCCCGGAGCCCTGCAAGCCACTTAGCCGCATGTCTAGACGAGCCTCGCTGtCTGATATCGGGTTCGGGAAACTGGAGACCTACGTGAAACTAGGCAAACTGGGAGAGGGCACTTACGCCACGGTATTCAAGGGGCGCAGCAAGCTGACAGAAAATCTGGTGGCCCTGAAAGAGATCCGTCTGGAGCATGAAGAAGGAGCCCCGTGTACGGCCATCAGGGAAGtgTCGCTGCTGAAGAACCTGAAGCATGCCAACATCGTTACTCTGCATGACATCATTCACACTGACCGCTGCCTCACACTGGTCTTTGAATATTTGGACAGTGACTTGAAGCAGTACCTAGACAACTGTGGAAACCTCATGAGCATACACAATGTGAAGATATTTATGTTCCAGCTCCTCCGTGGTTTATCCTACTGCCATAAGAGGAAGATTCTACACAGGGACCTCAAGCCACAGAACCTGCTCATCAATGAAAAGGGAGAGCTGAAGCTGGCCGACTTTGGCCTGGCAAGAGCCAAATCCGTCCCGACGAAAACCTACTCCAACGAGGTGGTGACCCTGTGGTACCGGCCCCCCGACGTTCTGCTGGGTTCGACGGAGTACTCCACACCTATAGACATGTGGGGCGTGGGATGCATTCTCTACGAGATGGCGACGGGGCGGCCCATGTTTCCTGGCTCGACTGTAAAGGAGGAGCTGCACCTGGTCTTTCGCCTCATGGGCTCCCCGTCTGAGGAGACCTGGCCTGGGATTACAGCTAATGAGGAGTTCAAGTCCTACATGTTCCCTCAGTATAAAGCCCAGGCTCTTATAAACCACGTTCCCAGGCTGGACACAGAGGGCATTGACCTTCTCTCAGCTCTTCTACTGTACGACACTAAGAAACGGAGCTCAGCCGAGGCGTCTCTGAGACACGCGTACTTCCTCAGCCTGGGCGAGAACATCCACTCCTTACCAGACACATCATCTGTGTTCTCGCTAAAGGAGGTGCAGCTGCAGAAAGACCCCGGCCATCGCAGCTCTGTCTTTCAGCCCCCAGGCCGGGGCAAGAACCGCAGACAGAGCATATTCTAAAGGCTGATACAGTGATACAGCCATCCTAACGAAGAGGATGCGCATCGAAAGAACAACATCACTATGAAGCAAATGACTGTACCTGACCCTTCCACGTACGACCTGCCTGCCCGTCTACTGAACCCTCGTCTCAGTGATACACTCAGCTGAAGACAGGAGACTGGAAGTCTTAACACACACTGACGTCAACTGTAATCAGCACTACTAACTGTATTTACCCTGTTTACATCTGGTCCCTTAATGCGGTTTGAGTATCAGGATTGTATCTGGATGTGTTGAAACAACATAATAGTGCAGAAAAGTGTGATCGAACCCAAGACATACGTAATTTATTTGATCGCTCAATTCATACATGCACCTGAGCCACATGTTATAGAAGTGCTAGCTATGACTAGGGGTGGAGAAAATATCGATATCACGATATAtcgtattttgttttgtttcgttTGCAATACTTTATTGATACATGCTGTCAAATAGCAATAATTTTATTGAACCATTACTGCAATTTGAAGTTCAGttttgcttcattactccacatggtggcgctataatcaaatcaATAGGGTAAACCTAAGGTGAAGGTTATTGTTTGtgaaattctgtaaaactgacaccaaaaaaatctatatttcttttaggaatattttaatcttgctatatacagctctggaa

Function

symbol description
cdk18 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CDK18 (cyclin dependent kinase 18).

NR:

description
cyclin-dependent kinase 18-like isoform X1

GO: NA

KEGG:

id description
K15596 CDK18, PCTK3; cyclin-dependent kinase 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682308.1 True 2326 mRNA 0.50 16 6395390 6502396

Neighbor

gene id symbol gene type direction distance location
LOC103042703 LOC103042703,LOC108437606 coding downstream 16626 6339628 ~ 6378764 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding downstream 318676 5917506 ~ 6076714 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 619245 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 631878 5746890 ~ 5763512 (-)
LOC103022065 NA coding downstream 928515 4994997 ~ 5466875 (-)
LOC103022878 NA coding upstream 310012 6812408 ~ 6828711 (-)
sox13 sox13 coding upstream 395595 6897991 ~ 6948954 (-)
kif17 kif17,LOC108438632 coding upstream 505051 7007447 ~ 7031027 (-)
sh2d5 sh2d5 coding upstream 530708 7033104 ~ 7050301 (-)
hp1bp3 hp1bp3 coding upstream 550830 7053226 ~ 7066086 (-)
G187676 NA non-coding downstream 60953 6317990 ~ 6334437 (-)
G187680 NA non-coding downstream 91322 6302766 ~ 6304068 (-)
G187678 NA non-coding downstream 92812 6300832 ~ 6302578 (-)
G187669 NA non-coding downstream 121259 6273931 ~ 6274131 (-)
G187666 nucks1,nucks1a,LOC108255091,LOC107654381 non-coding downstream 140926 6242092 ~ 6254464 (-)
G187700 NA non-coding upstream 17973 6520369 ~ 6520649 (-)
G187745 NA non-coding upstream 52919 6555315 ~ 6555877 (-)
G187763 NA non-coding upstream 255746 6758142 ~ 6758602 (-)
G187764 NA non-coding upstream 257111 6759507 ~ 6759902 (-)
G187766 NA non-coding upstream 272772 6775168 ~ 6801448 (-)
svbp svbp other downstream 872469 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 889643 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 1406132 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 2234436 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 2615670 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 475255 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 686220 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 886001 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 906726 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 3448688 9951084 ~ 9956317 (-)

Expression


Co-expression Network