mkrn2 (mkrn2)


Basic Information

Item Value
gene id mkrn2
gene name mkrn2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13033576 ~ 13047546 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682405.1
GGTCGCTGGTGTTCGGGGAAAGAGTTGGAGCTGCGCGTGCAGGAGAGGCGGGGGACCGGGCCGGGGTTATTAACTGCGTGGATTTCGGGGAATATGTCTACAAAGCAGGTGACCTGCAGgTATTTCATTCATGGTGTTTGTCGAGAGGGGAACAGATGCATGTTCTCACATGATCTGGCAAACAGCAAACCCTCAACGATATGTAAATTTTTCCAAAAAGGTGTCTGTGCCTATGGCGAGCGATGcagATATGACCACATCAAACCGGGGGGGCGGGGAGGAGGGCCGCCTCTGGAGCACACAAACAGACCCAGTAGTGCTGGAGTGTCTGTCCCAGGACCAGGGCCTCCACCCAGTACAGGCAGAAACACTAAGAAACCAGTAGTGTTGAGAGACAGAGCTCTGGCCAGTGACACTAGAGGTCAGCCTTACAGTGGAGAAAGTGCAGAGGTTCGGGATTGCTGGGACTACAGAGAAGGTTCCCAGGCCAAACCTCACACCTACCTTGATGCCATTCGTACAGGGCTGGAGAGTTCAGCCACAGCCAGCCCGTACCCGGACGTGCCCCACCAGCCACAGCTCTGCCCATATGCTGCCGCTGGCCAGTGTCAGTATGGCAGCACGTGCCCGTATCTTCATGGAGACATGTGTGAGATCTGCAGGTTGCAAGTTCTGCATCCGCACGACCAGGAGCAGAGGGCAGCACACGAGAAGATGTGTATGATGGCCTTCGAGATGGACATGGAGAAGGCCTTTGCTGTGCAGCATAGCCAGGACAAAGTGTGCAGCATCTGCATGGAGGTGGTCTACGAGAAGGCGTCTCCGTCCGAGCGGCGCTTCGGCATCCTGTCCAGCTGCTGCCACACCTACTGCCTGAGCTGCATCCGGCAGTGGCGCTGTGCCAAGCAGTTCGAGAAACCAATCATCAAGTCTTGTCCAGAATGTCGAGTGGTGTCAGACTTTGTTATTCCCAGCATCTACTGGGTAGAAGATCAGGAGGAGAAGAATCGTCTGATTGAGGAGTTCAAATCTGGCGTCAGTAAGAAGCCGTGCAAGTACTTTGACCATGGCAGAGGAACGTGTCCATTTGGAGGGAAGTGTTTCTACATGCATGCCAACCCCGATGGAACACGTGCCGAACCTGATAAACCTCGGAAGCAGCTCGGCTCGGAGGGAAACGTTCGGTTTCTGAATTCTGTGCGGCTGTGGGACTTCATTGAGGAGCGTGAGCATCGTGGAGTTCCACAGTTTGAAGATGAAGTCAACGAACTGGGAGAACTCTTCATGCAGCTGTCTGGAGCCGGAGATGAAAGTGGAACGTCAGCATCCCACTGAGCTCGCTCGATCTCTACTTCTCGCTCTCttatacatacaaacacacccacacactgacACTCACACACGCATACTTACACCTATAGGCCGACCTCAAGAAACCATGGTTTCATATCTTTGGTAACTGTGTACATTATCTGGGCAATAAAAATGTACTCACTGGTAAAACTTTCCCTGTTTATGGTTTGAAGTGTTTTttctaaaaagcaaaaaaaaagaaaagaatcttTTTACCTGTGGTACATTTTTTGTGGTTTGACATATAGCAACTGAATATGATCATATTTAAAGGCACCTGTATTGTTTCTGTAAGCTGCTATGTTTTCCTGATACATGAGGATCGAATATTGCTGGATTAAAAATGCGATTTTTAATGCGTCCAAAGAAAACATGTatcatgagaaaaaaagaaaaaaaagggactGGTAACACCTTTGGCACATCATGACTGCACTCCAGTAGTGTGTGAAGTATAACGATTATTGTGTatttaaagaaaagaagaaaaaaaaaaacagtgtaattgCTGCACTTAGATCCATTtacgaaaagaaaaaaaaaacacacaactttACTATTTTTGGGAGAATTGCAATATTAGAAGATTCATTTTCTTGTATCTCCTCATCTTACCTATAAACTTCAGTAAATGTTTTTAGGACTGCTTAGATATGATGACATCTTTCTGAAACACAGCAGAAACACTCATACTGAACTGAACTGTCCCGTCGTGTGTACGCTCGGTGATGATGGTACCTGATGAAGCTGGCATTATTCTGTTGTATGAATTGTCTTGTTGAGTGACTCTGGTGAGACTGTAATAAACTAGCAGTGTCTCCGCTGTATGACTGATA

Function

symbol description
mkrn2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within cell differentiation and nervous system development. Is expressed in several structures, including eye; gill; gonad; integument; and liver. Orthologous to human MKRN2 (makorin ring finger protein 2).

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase makorin-2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007399 nervous system development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682405.1 True 2189 mRNA 0.47 8 13033576 13047546

Neighbor

gene id symbol gene type direction distance location
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 34966 12994479 ~ 12998610 (-)
LOC111195380 NA coding downstream 43308 12983421 ~ 12990268 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 52759 12973940 ~ 12980817 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding downstream 61265 12952510 ~ 12972311 (-)
nuf2 nuf2 coding downstream 93116 12926056 ~ 12940460 (-)
pparg pparg coding upstream 37483 13085029 ~ 13132096 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding upstream 100650 13148196 ~ 13282473 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 337379 13384925 ~ 13395895 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 412189 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 446030 13493576 ~ 13533622 (-)
G189402 NA non-coding downstream 1336 13030170 ~ 13032240 (-)
G189385 NA non-coding downstream 130416 12902937 ~ 12903160 (-)
G189381 NA non-coding downstream 136968 12894863 ~ 12896608 (-)
G189380 NA non-coding downstream 142307 12890834 ~ 12891269 (-)
G189376 NA non-coding downstream 153232 12879945 ~ 12880344 (-)
G189404 NA non-coding upstream 3013 13050559 ~ 13053733 (-)
G189417 timp4 non-coding upstream 142232 13189778 ~ 13194807 (-)
G189418 NA non-coding upstream 159494 13207040 ~ 13210220 (-)
G189419 NA non-coding upstream 163242 13210788 ~ 13211185 (-)
G189422 NA non-coding upstream 196035 13243581 ~ 13243984 (-)
LOC111195455 NA other downstream 319544 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 414010 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 638044 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 854966 12160542 ~ 12178610 (-)
G189055 NA other downstream 989283 12043913 ~ 12044293 (-)
tsen2 NA other upstream 15253 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2271097 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2361661 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3298155 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3522077 16569623 ~ 16599317 (-)

Expression


Co-expression Network