LOC107197607 (ptk6,LOC108231632)


Basic Information

Item Value
gene id LOC107197607
gene name ptk6,LOC108231632
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15134775 ~ 15162761 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682433.1
GTTCCTCTAGTGGACACCATTTCAGTTCCGGCCCCCAGACCCAAACGCCCAACCGGAGCCCGGCGGTGGGGTCCAGCACACGCATAAACACCTACCATCCCCAACAACACAGACCACCCGCAACTGTTCGGGGGGCGTGGACTACCCGGGCTCCATCATGTCCCCTCAGAGAGGAGTCACTACTTTCGTGGCGTTATATGATTACGAGTCTCGGACGTCTTCAGATCTGACGTTTAAGAAGGGCGAGCGTCTGCAGATCCTCAATAACATGGAAGGAGACTGGTGGTTGGCTCGTTCTTTGACTACGGAAGAGAGTGGATACATCCCTAGCAATTATGTGGCACCATCTGACTCCGTCCAAGCTGAAGaGTGGTTTTTCGGTAAGATTACTCGTCGTGATTCTGAACGACTACTGCTAAACATGCAAAACAGGAAGGGAACATTTCTCgttagagagagcgagacaacTAAGGGTGCGTACTGTCTGTCTGTGCTGGACCATGATAACATGAAGGGGCTGAACATTAAGCACTATAAATTCCATAAGCTGGACAGCGGCGGCTTTTACATCACATCCCGCACGCAGTTCACCAGCCTGCAGCAGCTCGTCCTCCACTACCGCGCACATGCAGACGGGTTGTGTCATGTACTGACAGATATATGTCCCATGCTGAAGCCGCAGACACAGGGTCTGGCCCGAGACGCCTGGGAAATCCCCCGTGAGTCGCTGCGACTGGACGTGAAACTGGGCCAGGGCAGCTTTGCGGAAGTGTGGATGGGGACGTGGAACAGGACGACACAAGTAGCCATCAAGACTCTGAAGCGCGGCACCATGTCTCCTGAAGCGTTCCTGGAGGAGGCCCAGGTTATGAAGAAACTTCGACATGAGAAGTTGGTTCAGCTGTACGCCGTCGTCTCAGAAGAACCCATTTATATCGTTACAGAATATATGAGTCAAGGCAACCTGCTGGACTTCCTGAATGGAGATAATGGGAAGTCCCTGAGGCTTCCACAGTTGGTTGATATGGCCTCTCAGATTGCTGCTGGCATGGCGTACATGGAGAGGATGAATTACGTACACAGGGATCTAAGAGCTGCCAACATCCTGGTTGGAGATAACCTGGTGTGTAAGGTGGCAGATTTCGGACTAGCGCGACTCATTAAGGATAACGAGTACATGGCTGGACAGGGTGCAACGTTTCCTATTAAATGGACCTCCCCCGAGGCAGCACTGTACGGCCGATTCACCGTCAAATCAGATGTCTGGTCCTTCGGCATATTACTAACCGAGGTGGTCACCAAAGGACGAGTTCCGTACCcagGAATGACAAAAAGTGAGGTGCTGGAAGAGGTGGTCCAAGGGTACCGGATGCCGTGCCCGGCAGAGTGCCCGAGCTCCATGCACGAGCTGATGCTGAGCTGCTGGCAGAAGGAGCCGGAGGAGCGACCTACGTTCGAGTATCTGCAGGGCTTCCTGGAGGACTACTTCACCTCCACGGAACCGCAGTACCAGCCGGGCGACAACCTCTAGGGCTTCCAGAGTGGAATGAGGGGCGGAGTTTACAGAAAAGCTCTCTTTCTCCATtgtaaatgaaaattaaaaagatATTCAGaactcttcctcctccagatCCTGATTGGGGAGTTGTTTTAAGGGCAGAGAAAGACTGTGGTACAGACACGCCCCTCTATAAACTCCCGACCTGTATTTTTTCACCCAGTGGAGTACTGCCACGTGCCTAGAGGTGCAAAAGGACTACTTAATTTGTGTGCTGTTATCCTCTCCTGCTGTTTTTCCATTATTTCATATCGGGGTGTATTTCCTGCAGCAGTGTTTGccgttttactttatttactgaACTTTTCCTCTACGTAAACCCTTTAGCATTGCAGTGCTACGAAGGATTTTTGTGTGATAGAGCCATAGAAGAACTGCTTCTGcgtctaaaaataaatatttctgcaaATTA

Function

symbol description
ptk6 Enables identical protein binding activity and non-membrane spanning protein tyrosine kinase activity. Involved in several processes, including cellular response to retinoic acid; negative regulation of protein tyrosine kinase activity; and protein phosphorylation. Located in several cellular components, including cytosol; nuclear body; and ruffle.

NR:

description
PREDICTED: protein-tyrosine kinase 6 isoform X2

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682433.1 True 1970 mRNA 0.51 11 15134775 15162761

Neighbor

gene id symbol gene type direction distance location
LOC103042998 ptk6,LOC108255075,LOC103372356 coding downstream 4306 15100475 ~ 15130469 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding downstream 38633 15090225 ~ 15096142 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding downstream 47086 15073621 ~ 15087689 (-)
tp53rk tp53rk coding downstream 73687 15056169 ~ 15061088 (-)
LOC103021615 NA coding downstream 80598 15041675 ~ 15054177 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding upstream 74221 15236982 ~ 15282579 (-)
LOC103025355 NA coding upstream 133898 15296659 ~ 15305207 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding upstream 196414 15359175 ~ 15407969 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding upstream 305452 15468213 ~ 15503648 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding upstream 332949 15495710 ~ 15504391 (-)
G189951 NA non-coding downstream 93533 15039981 ~ 15041242 (-)
G189867 LOC108424607 non-coding downstream 220710 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 267036 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 290532 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 304469 14825835 ~ 14830306 (-)
G189987 NA non-coding upstream 35665 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 46856 15209617 ~ 15284715 (-)
G190004 NA non-coding upstream 52877 15215638 ~ 15217350 (-)
G190171 NA non-coding upstream 190676 15353437 ~ 15354632 (-)
G190183 NA non-coding upstream 225334 15388095 ~ 15451570 (-)
tsen2 NA other downstream 2058033 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2420743 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2515209 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2739243 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2956165 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 155882 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 246446 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1182940 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1406862 16569623 ~ 16599317 (-)
cass4 NA other upstream 1671089 16833850 ~ 16869461 (-)

Expression


Co-expression Network