LOC111195382 (tuba1c,LOC108431527,LOC105935211,LOC102211704)


Basic Information

Item Value
gene id LOC111195382
gene name tuba1c,LOC108431527,LOC105935211,LOC102211704
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14647806 ~ 14654334 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682436.1
GTTCAAACCATCACCTCACAACGGATTCCTAACGGTCTTAGCGTGAGAGCTGTTTTACGAAGTTTTAACGAAGTTTTTACGCAGTTAAAGAAGTTGTAGTTCACTCCTTCCACATCAGTATGCGTGAGTGTATCTCCATCCACGTGGGCCAGGCTGGTGTCCAGATTGGAAATGCCTGCTGGGAGCTGTACTGTCTTGAGCATGGCATTCAGCCGGATGGTCAGATGCCCAGTGACAAGACCATCGGCGGAGGGGACGACTCCTTCAACACCTTTTTCAGCGAAACAGGAGCTGGCAAGCACGTCCCCAGAGCAGTTGTGGACCTAGAGCCCACTGTGATTGACGAGGTCCGTACCGGCACTTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGAAAGGAAGATGCTGCCAACAACTACGCTCGTGGGCATTACACCATCGGCAAGGAAATCATCGACCTGGTTCTCGACAGGATCCGCAAACTGACTGACCAGTGCACTGGTCTCCAGGGCTTCCTGGTGTTCCACAGCTTTGGAGGTGGTACTGGTTCTGGGTTCACCTCCTTGCTGATGGAGCGCCTCTCCGTCGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCACAGGTGTCCACCGCTGTGGTGGAGCCCTACAACGCTATCCTGACCACCCACACTACCCTCGAGCACTCCGACTGCGCTTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGTAGGAACCTCGATATCGAGCGTCCTACCTACACCAACCTCAACAGGCTGATCAGCCAGATTGTGTCTTCCATCACCGCCTCCCTCCGATTCGATGGTGCCCTCAATGTTGATCTGACCGAGTTCCAGACCAACTTGGTGCCCTACCCTCGTATCCACTTCCCACTGGCCACCTACGCCCCGGTTATCTCTGCTGAAAAAGCTTACCACGAGCAGCTTACTGTTGCAGAGATCACCAATGCTTGCTTTGAGCCTGCAAATCAGATGGTGAAATGTGATCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTTGTACCCAAAGACGTCAACGCCGCCATTGCCACCATCAAGACCAAGCGATCCATCCAATTCGTGGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCCCCCACTGTGGTGCCCGGCGGTGACCTGGCCAAAGTCCAAAGAGCCGTGTGCATGCTAAGCAACACCACAGCTATCGCAGAGGCCTGGGCCAGGCTCGACCACAAGTTCGACCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTAGGAGAGGGTATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAGGATATGGCGGCTCTGGAGAAGGATTATGAGGAGGTTGGTGCCGACAGCCTGGAGGGAGAAGATGAAGGAGAAGAATATTAAATGTGAATTAAagaggacatgaaacatttcagtttgtacaagttttctaagggattaaatataatggaatttatttgggggggatttttttatataaaatgtttacagactaaattataatatatttatgtttgttacgtttgCGCTAGGGTGCCGCCATGTTGCCCatgcagcactggtgacgtcacgaggttggttggtgaAGAGCCCAGGTACATAACTA

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: tubulin alpha-1C chain isoform X2

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682436.1 True 1689 mRNA 0.52 5 14647806 14654334

Neighbor

gene id symbol gene type direction distance location
prph prph coding downstream 9456 14624822 ~ 14638350 (-)
tamm41 tamm41 coding downstream 26394 14610951 ~ 14621412 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding downstream 38182 14549146 ~ 14609624 (-)
LOC111195442 NA coding downstream 392334 14251464 ~ 14255472 (-)
LOC103026383 NA coding downstream 1075195 13557022 ~ 13572611 (-)
LOC103046666 Tuba1a,tuba1a,LOC108255233,LOC108275946,LOC106934846 coding upstream 1911 14656245 ~ 14659947 (-)
suox suox coding upstream 13673 14668007 ~ 14677478 (-)
mcrs1 mcrs1,LOC107696040 coding upstream 25593 14679927 ~ 14694115 (-)
dnajc14 dnajc14,LOC107562234 coding upstream 66051 14720385 ~ 14728314 (-)
LOC103038772 NA coding upstream 100042 14754376 ~ 14764355 (-)
G189808 NA non-coding downstream 51232 14594996 ~ 14596574 (-)
G189803 NA non-coding downstream 101161 14545906 ~ 14546645 (-)
G189789 NA non-coding downstream 224136 14420713 ~ 14423670 (-)
G189779 NA non-coding downstream 322509 14324804 ~ 14325297 (-)
G189778 NA non-coding downstream 336764 14310305 ~ 14311042 (-)
G189814 inpp1,LOC107683640,LOC107730897,LOC107562242,LOC107737355 non-coding upstream 53401 14707735 ~ 14709526 (-)
G189821 inpp1 non-coding upstream 58549 14712883 ~ 14713733 (-)
G189823 NA non-coding upstream 63102 14717436 ~ 14799628 (-)
G189834 NA non-coding upstream 105454 14759788 ~ 14760374 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding upstream 126214 14780548 ~ 14782900 (-)
tsen2 NA other downstream 1571064 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1933774 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2028240 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2252274 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2469196 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 664309 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 754873 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1691367 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1915289 16569623 ~ 16599317 (-)
cass4 NA other upstream 2179516 16833850 ~ 16869461 (-)

Expression


Co-expression Network