LOC103025355


Basic Information

Item Value
gene id LOC103025355
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15296659 ~ 15305207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682441.1
tgaaagtttttttttccttacagcaaaaaaaatacgtttttggAGAAATCCAGACAGACGGGTTCAGAAGGACTGTCTGAGGACAAGCAATCAGCTTCACTCAAACCTGCCGTCTCTGAGATGCGCGACTCAGAAGAAGggaTAAATAAGGAGGAAAAAAGACCCTCAGCAGTTTCAGAGCCAACCCAGGAGATTGAAGCATCTCATTCATCCTCCACAGAGACCAAGAACCCTCATCCATCTCAGGCTCTTTCCACAGAGATGGAGCAGAAGGAGGGCGAGGAAGTAGATCACAGAGAAACTGAGCTGGCCTGGCCTCAGAAAAGCCCAGAGCACCCTGCTGAGCCGGAGGAGTCGGCCGACAGGAGAGAACAGCCTAACCCTCACTTAATTCCTGGCAGCCTTGTGAAGGAAAGCTCCGTTAGTCCTTTACGTGAGGCTGAGCGAGCGTCCTCTGTTGTGTCACCCGAATTAGAAGCAGAGGGGGATCCTGACTTTGAGGACGATGCTCCGGGCGGGACTGGAAACCACCCTTGCCAGCATTGCGAGCGGCATTTCTCCACCAAACAAGGTCTGGAGCGCCACGTTCACATCCACACCATCGCAAACCACCAGACGCACACGTTCAAGTGCAAATACTGCACCAAGCCCTTCGGCTCGCAGGTAGGCAGGCGTAGACACGAGAGACGGCACGAAAACAGGAGTAAAACTCTGAAAAGGCCGAGTTCTTCTCTTGCAGGAACAGCTTTTCCCCTGAGTCCCTCCAGGCTTAACGACTCTCCTCCTACCTCCGATTGTGTAACGTCTCCGAGCCCTACCATCATCATGACTTCTCAGAACGGTCCTCCTCAGCCAGGCTCTGATACTAAGGATGCTGGAGCAGACCCTGAACACACCTTCGTCTTAGATGAAAATGGGGAATCAAAGGAATTGCACCCTTGCAAATATTGCAACAAGGCTTTCGGCACGCATACAAACATGCGCAGGCATCAGCGCAGGATTCACGAACGTCACCTTATGCCGAAAGGTGTTCGCAGGAAAGGTATTCTCCTACAGGACATGCCATCCCAACAACATCCAGAGGAAGAAGGTCCGGTCACAGCACAGTCACTCCAGAAGGCGTCGCCAAACGCCAGCCCACCGCCTGTCTACGTACCCAGTGTAGACACAGAGGATGAGGGCGAACGAGAAGAGGGCATGGTCAACATTTCCAAAAACATCTCAGAGAACCTCAGCCTTTACATAGATGGCAAGATCTTGTCCACAAACACTGTCAGCACCTGTGAAGTGATCGAGGTCGACTCGAGCACTGCTGCACTGTTCGGATTAGACACGGTCATACTGAATCCCAACCAGATAAGCCAGGCACTTAAAGTTGAAACGCAACCTTCGCCTGTGAAAGAGGCTTCGGCTAGTCCGAAAAGGAGAACTTCCACACCGCCGCTTCTTCCTGCAGTGAAAATGGAATCTGAAACTCACCTGCTTTCGTCTGCTGGCACTTCGTCCTGCACTTCCTCTCAATCGCCTTTATTAGTTGGCACCGTCCTCCCACAGTCCACAGAGACGTTGGCGTTCCAAAAGGAGAAGACCGTTTATCTTTCTCCCAAATTGAAACAGCTCCTGCAGACCCAGGACAGTCAGAAACCAGCTCTTACTCTAATTGCAGATAGCCATAGATTGACTACTCCACTTTCCGTAACCTCCCTCCCTGCTGCTCAAGGCAGATTCAAAAGAAGGACCGCTTCCCCTCCGACTCCTGCTCAAAGCAGCTCTTCGCTGAGCCCTGAAAGCTGTTCAAACATTGAAACGGGGGATTCATTTACGCTTAAGGTGCCAAAGGTTGAAAGCCACTGTACGGCATCCTGGAGTTCACCCAGCAGTGATCAGAGGGACTCGGTGAGTCCCTGTGGAAAGGACTGGGCTGCTTCCGTAAGTGGAGGCAACTCTTGCAATCAGCTGCCTCTTGACCTTTCTAGTGCAGTTAGCAAAAAAGACAGCAGGACCTCTAGTAAAGCGTCTGGAGAATCTGTGCTGGATTTAAGCCTGCATCGTAAGGGTGCGGGTGCACCAACAGCTCAACATGGAATTTCTTTAGCGCCTCATGTTAAGAGAAAGAAGCCTAACACCAGCATGTTGGAGAAAGTTCTTATGAATGAGTACGCTGGCCTAAGTGTAGCAGGAGAGGAAGGTTCTACAAGCCTCGACAGTCCAGACGCCGCCAACTCCTctccaggcagtgatgcaggcGTATCCCCGGCTAGTCCCTCTTCCAATTCAGAAAACCTTCCTTGTGAAAATCCTTGTGAATCTTCGCCTCCTCCTTCCTTGACTCCCGTTACTATTAATCCTTCTTCTCCATCGTCCTCAAGCCTGGCATCCTCAACGCCTCCTCCTCCAGTTCTGCCATCTGTCCCTTCACCTCCACCTCTAACTTCTCGCCAATCTCTGGACTCTTTTCCCAAACTCTCTCCCAAGCCTATTGACAGTCCCCTAGAGGAGGAAATGTCCAAATCCTCGGCAGAAGAAACAAGCCATGATCTCAACATTAAAGACTTCAACCAAACTGCTAAGCAGTTAGACCCCATGACATATGCACTGCCTCAAAGTCCTCAGGGCACAAAAAGACATTATAAAGCAGATTCCTTTTCAAAATCTGGAACACTACATAAGGGCTCCCCCATAAAAACTGCAGATTATGCGGTTTCCTCCTGTGAAAAGTATTCTGACTCTGAAGACAGCCAAAGTAATTCCTTTGATGAAAGTTTCCCTCCAGACCTCaacagcattaaaactgagggacGCAAGCAACCTCAATCCTCTCATTCTCCTGTACTCTCCACTTCTTCTAATTCTAATAAAGAATcaccctcttcttcttctcctcctttttcttcttACAAAGTAGAGGAAGATTCCCAGTCCTCTACTGCAGGGCCATCAGCTGATGATATGGTGGTCAATAATGAAACTGTTACGATTGGAAAGGTGGAAAGTGAAATTGCAGCCAGCACTGAAGATGTTTCCTCTACTGGAGGAAACGCTGCAGTAAAAACTTTAGACTCTGCAGAGACGGAAACTGAAACATCAGAGCAGGACACATTTACCAAGAGCTTTGTGTGCAACGTCTGTGAGCAGCCTTTCCACTCGATTAAAGAACTCAGCAGCCACATCATGCAGCATGCCGTCGAATGGCCTTTCAAATGTGAATTCTGTGtgcaattatttcaaaattctTCAGCTCTTCTGGAGCATCGCTCCTCTCTCCACGGTGTTGGGAAAATTTACATTTGCTCTGTCTGTTCAAAAGAGTTTGCTTACCTTTGCAACCTTCAGCAACACCAGAGCGATCTGCACCCCGGACAGAGCTGTGCTCATACATCTGTAGAAAACGGCAAGCTGAGACCGCAGAATTACACAGATGCTGCAAATATGCAGGCAATTATTGAGAGAAATTCCTTGCATTCAACCACTGACACATCTGTGGATGATGACCCTCAGGATTCCTccgaggtgtgtagtgataaagacattaaaaaggaAAACGGTGATGATCTAACCGGACAAGAGGATCCCACAGAAGAGCTGTAcactacaataaaaataatggcCTCAGAGGCCGGAAAGCCTAAAGGCCCAGATGTGCGTCTCGGCATTAATCAACACTACCCCAGCTTTAAGCCTCCACCCTTCCCCTACCACAACCGAACATCTGCTGCCAACGTAGCATCTGCAACCAACTTCACCACACACAACATCCCTCAAACGTTTAGCACGGCCATCAGGTGCACAAAGTGTGGTAACAGCTTCGACAACATGCCCGAACTCCACAAACACATCTTAGCCTGTGCTAATGCTAGTGATAAGAGGCGCTACACTCCCAAGAAAAACCCCATTCCTCTGAAGCAGATCGTGAAGAAGCCTCAGAATGGTGTCATGCTGCTGTCAACTGCTGCAACAGCTGCCGGCGGTCAAAATGCCTTCCGCAGGATGGGTCAACCCAAGCGGCTCAACTTCAACCAGGAGATACCCGCCAAGATGAAGATGACCGCCTTGAACAAAAAGAAGaaccagcttgtccagaaggCGATATCTCAGAAGAACAAGACTGCCGCTGCTGCGTCTGCAAAGAAGGCTTCTGTACAAGTTAAGGAGGAGCAGCAACCAAGCAGCGTCTGCCCGTACTGCAATCGCGAATATACGTACGCTGCCAGCCTTGCGAAGCATGTCGCAGGCAGCTGTCCTCAGAAACCAGCTGctaagaaaaagcaaaaaacaccaACCCTCAAAGACAAAAATGTGAATCTTCGGACTCGAGTCACGGACTCTGAAATCAAACAAGAACCTGAGGCCAACCAGGTCACGACCGGGCGTCCTCAGGGGAAATCACCGCGGAACACAGAAACCGTAGAGATTGAGTTGGCTACACCAGCTAAGGAAGGGAAGGAAAGCAAAGGAAAAGCGGGGACGTCTCAGGCTCGTTCCTCCAAAAGACCTGCAGCCTCTACTGCCTCCAGTAACACAGACAACTCAGCACCCAAAAGCAAGAAGGGCAGAAAGAGTGGCAGCAGCGTTCAGCCCGTAACCCCGCCCTCCTCATCGCCGCCTGCTGTTGTGAATGAGCCTGCGGCACGGACAACCACAAAAACTCCACGTGTTacaaaagataaagaaaaaggtaaagagaaagagaaagacactgTGGTCCCAAAGAAGGAGACTGAAACCAAATCGCAGGTCCAGACCAAGAAAGAGGAGCGTTTCTCTAAGAGGACGCCGCGGGAGCGAGTGGGCGGTCCTGTCACCCGCAGTCTGCAGAGTTCCAGCGGGGAGGTGAAGAACGAAGACCAGCATAAAGAACCTGGGGATTAAAAGgaATCCCTGTGGAAGGACTGGAGGTAAAGCGCAGTGGACTGACTGTAGTTAGTGGCTGCAGGATTTGCTGGCGAGAGAAGTGCTGGTGAACCGGATCTGGTTGAATTATTCGATTTATTAGGGTCGAACCAGATTACCGATAACGGAACAGGAGCATGTtctaaatgcacttttctataAAACGAGACGAGCCTTTTTTTGTTGGACATgcaaaccccccaaaaaacaatggaaaaaaaagaggactGTAGATGATTCTGATGAtgatctctgtgtctcttaaagTAGAGGTGGGTAATCCGGTCCAATTGTGATTGGGTTCCATCTACTTGGACAGAACTGGATCCGGATCTCCCTCCTCTAAATCTAAAGTCTAATATTATAtctaatatttctttatttacaataaataagtaACAGCCCCGTGTTTCCCTTAAGAGTGATGAGGCTGATTGTATTGCAACAGGCAATCATACATCAGTTGTTAACACAACCAACCGTTTTTGGTATTCCTtacttatttctttctctctttttttttttcttcgttttctCGTCCTTTGTGTTTTGTGAACGTTCTAGCGTTCACACTCACCAGTCTCACTTTTACTGCATGTGCTCTGTATACAGTATAGCTAGACTGACCCTCTTTCGTGTCGATACTCTACATACTCTACTTCTGACCTGCGCTTCTTCTTTTTACCGATGCAAAacgaaagaaaatatatatatggatatttaatttaatgtaatgctgCATAAGGAATGCAATATTTGTTAATGAAGCTCTTGCATCGTTTTTCCTCTTGTGTTGAGTTTTGCGTGAACACAGTGCTCCTCTGAAAGCTGTTTGATACAGTGGGAGGATGACATGGGCGAGTGGGCGACTGACGGTGTTCTGTATGATATTATCTTATCCCTGTCTGAAAAAGCCAACCCATGAGCCGTGTGTCGGTTTTGCTGTCAATAACTTTTTATAATCCGTAGCATTCACTTTACAGCAGGACTGCTGGCCATTCTAactacactaaaacacacatacaacccagcaaaacactgttttttgtttttctcctgAGAATAAGCGCTGGAATATATCGTGCCATGTTGAAACTTCACGTTAAAAGTCGCGTAAGCATTATGTCTTTATGCTTGACTGATTAGCACCTCTTTTATTGCCAATTTATATGAAATTCACTTTACATAGGTTACATCTTGccttgaaaatgaatgaaaaccatGAAAACTGTATTATTTGGGTTGGAAATACctattttttcctctttgttTTGATGTAAAGCTTTTGTAAAATTCTTGTTTTCCTCCATTATTTCGAGTAGAGCAGCCAAAACGGCGGTTTTCAGATGTCAGAGGCTGATTGCTGACATCAAGGGTGGATTATGACGTAATGAAAACCAGAGgggataatgatgatgatgatgttttagTTTATGAATTTTTCAGTCAAATTCCATTGAATTCCTCAGTTTGGGAGAAGTAGGTCTCGAGGTATGGTGTGAAGtttatattattcatatttaactTGCCAAGCCTATAATAGGAATGGTTGTGGTTATCCAAATATTCCAGCAGATCTGTGTTCAGTTCCCTGTCTGTGTTCATGGGTATTCAGAATAAAGTCATGTGTTAGCATGGCTtctgtacatattttttatgtacataTGTAAATCTTTCCCCAAATAAACCGTTATAAATAGCA

Function

GO: NA

KEGG:

id description
K11432 PRDM2, RIZ; [histone H3]-lysine9 N-trimethyltransferase PRDM2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682441.1 True 6592 mRNA 0.47 6 15296659 15305207

Neighbor

gene id symbol gene type direction distance location
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding downstream 14080 15236982 ~ 15282579 (-)
LOC107197607 ptk6,LOC108231632 coding downstream 133898 15134775 ~ 15162761 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding downstream 166190 15100475 ~ 15130469 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding downstream 200517 15090225 ~ 15096142 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding downstream 208970 15073621 ~ 15087689 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding upstream 53968 15359175 ~ 15407969 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding upstream 163006 15468213 ~ 15503648 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding upstream 190503 15495710 ~ 15504391 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding upstream 214458 15519665 ~ 15524173 (-)
efcc1 efcc1,LOC107581369 coding upstream 418092 15723299 ~ 15761602 (-)
G190001 NA non-coding downstream 11944 15209617 ~ 15284715 (-)
G190004 NA non-coding downstream 79309 15215638 ~ 15217350 (-)
G189987 NA non-coding downstream 93893 15198426 ~ 15202766 (-)
G189958 NA non-coding downstream 99600 15059956 ~ 15197059 (-)
G189956 NA non-coding downstream 161233 15101728 ~ 15135426 (-)
G190171 NA non-coding upstream 48230 15353437 ~ 15354632 (-)
G190183 NA non-coding upstream 82888 15388095 ~ 15451570 (-)
G190199 NA non-coding upstream 251314 15556521 ~ 15569271 (-)
G190204 NA non-coding upstream 292120 15597327 ~ 15607905 (-)
G190214 NA non-coding upstream 412892 15718099 ~ 15798757 (-)
tsen2 NA other downstream 2219917 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2582627 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2677093 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2901127 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 3118049 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 13436 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 104000 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1040494 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1264416 16569623 ~ 16599317 (-)
cass4 NA other upstream 1528643 16833850 ~ 16869461 (-)

Expression


Co-expression Network