ppcs (ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385)


Basic Information

Item Value
gene id ppcs
gene name ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15519665 ~ 15524173 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682451.1
ATGCGCACTGGATAAAGACATTGTGTATTCCGGGTGACCCCAGTGCAGTAAAGTTTATCtggattttctgttttatttcattattttattattttatctctaATCTGCGCTGCTCTGCTGCATCAGCACCGCATACAGATCCTGCTCATCATGGCTCAGTCCAGTCCGGTTCCGGCTGCATCAGACGGGGGTCTGTGTGAGGAGTTCGCGGTTCCCTCTCAGGTGGAGGAGGTGCGGAGGCTGATGGCGGAGTTTGCGGAGCGGCACGACGCCGGCGGCCGCAGGGTGGTGCTGATCACCTCCGGCGGAACCAAGGTTCCCTTGGAGTCCAGAACCGTCCGGTTCCTCGACAACTTCAGCAGCGGCCGCAGGGGGGCGTCCTCCGCTGAGTACTTCCTGGACTCGGGGTACGCCGTCATCTACCTGCACCGGCACCGCTCCCTGTACCCCTACACCCGCCTCTACACCGGGGTCAACCTGCTGGACAGCCTGAGGCTGGAGCCGGGCGAGGGCGAGGGCGGGTCCGGCCGGGTTCTGGTGGATCAGGCGGAGCTACAGAACGTGGCCGCGGTGCTGAAGCGGTACCAGGCGGTGAAGACGGCAGGGTTACTCTTACCTGTGGAGTTCAACACCTTATCAGAGTATCTTCATCTCCTCAAAGCTGCAGCTCAGGCTCTCAATTCTATAGGCTCCAACGCCATGTTTTATTTGGCTGCAGCAGTTTCTGATTTCTACATCCCAGCGTCCGAAATGCCGGAACACAAAATCCAGTCCTCGAACGGCCCCCTGCAGATAAGCATGAAGATGGTCCCCAAGATGCTGAAGCCCCTGGTGAAGGACTGGGCTCCACAAGCTTTTGTCATTTCGTTTAAGCTGGAAACGGATCCGTCCATCCTCCTGGAGCGCGCCCGGCGAGCTCTGGACATCTATAATCACCAGGTCGTGGTGGCCAACGTCCTGGACACGCTGCGCGGATACGTCGTCATCGTGACCAAAACCACCCAGCATGAGCTAACCCTCACCGACGACGACGTTCAGAAAGGGATCGAGATCGAGGAGAAGATCGTCAGCAACCTGTCTGCTGCTCACACTGAGTTCATGAACCGATGATTCGATTTAATCATACGATCATAATCATATGAAGCATACAGTACCGGtgaaaagtttagacacaccttaaattcagtgtttgtccacagt

Function

symbol description
ppcs Predicted to enable phosphopantothenate--cysteine ligase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human PPCS (phosphopantothenoylcysteine synthetase).

NR:

description
phosphopantothenate--cysteine ligase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682451.1 True 1200 mRNA 0.55 4 15519665 15524173

Neighbor

gene id symbol gene type direction distance location
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 15274 15495710 ~ 15504391 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding downstream 16017 15468213 ~ 15503648 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding downstream 111696 15359175 ~ 15407969 (-)
LOC103025355 NA coding downstream 214458 15296659 ~ 15305207 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding downstream 237086 15236982 ~ 15282579 (-)
efcc1 efcc1,LOC107581369 coding upstream 199126 15723299 ~ 15761602 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding upstream 241710 15765883 ~ 15784654 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding upstream 290047 15814220 ~ 15825239 (-)
LOC103047460 NA coding upstream 307915 15832088 ~ 15833721 (-)
LOC103030277 LOC108415871 coding upstream 322688 15846861 ~ 15851191 (-)
G190183 NA non-coding downstream 68095 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 165033 15353437 ~ 15354632 (-)
G190001 NA non-coding downstream 234950 15209617 ~ 15284715 (-)
G190004 NA non-coding downstream 302315 15215638 ~ 15217350 (-)
G189987 NA non-coding downstream 316899 15198426 ~ 15202766 (-)
G190199 NA non-coding upstream 32348 15556521 ~ 15569271 (-)
G190204 NA non-coding upstream 73154 15597327 ~ 15607905 (-)
G190214 NA non-coding upstream 193926 15718099 ~ 15798757 (-)
G190232 NA non-coding upstream 266552 15790725 ~ 15866179 (-)
G190252 NA non-coding upstream 384862 15909035 ~ 15909528 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 53081 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 197490 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2442923 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2805633 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 821528 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1045450 16569623 ~ 16599317 (-)
cass4 NA other upstream 1309677 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1656941 17181114 ~ 17193747 (-)
G190788 NA other upstream 1693148 17217321 ~ 17219780 (-)

Expression


Co-expression Network