acad9 (acad9,LOC107749438,LOC107566791,LOC107551129)


Basic Information

Item Value
gene id acad9
gene name acad9,LOC107749438,LOC107566791,LOC107551129
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15765883 ~ 15784654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682456.1
ATGAATTTTAGCAGATTATTATCGATTTCCAGATCATTAAAACTCTCTACATCTTTATTCCCGCCTCCAGCGAGATTAACAGCTCCTCTACAGCCCCGGCGCTCCGTCAGAACCAGCCCCAGCAGCGCAGCCTACGCTAAAGACCTGTTCCTGGGCAAAGTCAACCAGAAAGAGGTGTTTCCCTATCCGGAGATCAGTAATGAAGAGCTGCAGGAGATTAATCAGTTCGTGCCGCCGGTGGAGAAGTTTTTCAGTGAAGAAGTCGATTCAAAGAAGATCGATGAGGAAGCCTTTATCCCTCCTGAAACGATGGACGGACTGAAAGCACTCGGGTTGTTCGGGATCCAAATACCTGAGGAGTATGGAGGTCTCGGCCTGTCGAACACGATGTTCGCTCGGTTAGGAGAGATTATCTCTATGGATGGAGCTATTACCGTCACTCTCGCAGCACATCAGTCCATCGGATTAAAGGGTATCCTGTTGGCTGGAACTGAGGAACAGAAAGCAAAATATTTACCCCGTCTGGCTTCAGGAGAGCATATAGCAGCTTTCTGTCTGACTGAACCCGGgagTGGAAGCGATGCTGCTTCTATTCAGTGCCGCGCCAAACTGACGGAGGATGGGAAACACTTCCTGCTCAACGGCTCAAAGATATGGATTTCTAATGGTGGAATCGCTGAAATTATGACAGTGTTCGCCAGAACAGAGGTGGTGGATAAGGACGGGCAGAAGAAAGACAAAATTACAGCTTTTATTGTAGAAAAGGCGTTTGGTGGGGTGAGCTGCGGCAAACCGGAGGATAAACTGGGCATCCGAGGATCAAACACCTGTGAGGTGACATTTGAAGACACAAAGGTGCCAGTAGAGAACGTGATTGGGCAAGTTGGAGATGGATTTAAGatTGCAGTGAATATTCTGAACAGTGGGAGGTTCAGTATGGGCACTGCGGGTGCAGGCATGATCAAAAGACTGATTGAGATGACTGCAGAATATGCTGGAACAAGGAAACAGTTCAACAGGAAGCTCTCTGAGTTTGGAATGATTCAGGAGAAGTTTGCTCTCATGGCTCAGTACGCGTATGTGATGGAGAGCATGGCGTATCTCACTGCTGGGATTATGGACAGACCTGGAGTTCCAGACTGCTCTCTGGAGGCAGCTATGGTGAAGATCTTCAGCTCTGAGGGAGCGTGGATTTGTACGAGTGAGGCGCTGCAGGTTTTGGGAGGACTGGGATACACCAAGAATTACCCGTATGAACGCTACCTCAGAGACTGCAGGATCCTGCAGATATTCGAGgGAACCAATGAGATCTTGAGGATGTTCGTGGCTCTGACAGGGATGCAGCACGCTGGTAAAATAATAACAGGGAAAATAAAAGAGATGAAGAAGGGGAACGTGGGAACTGTGTTTGAGTTTTGTAAGCAGAAGATTATGGAGAATCTGGGAAAGACCGCGAACTTCGGCCTGACCGGCAAAGACGGGGTCGTGCACCCCAGCTTAGCGGAAAGCGCCACCATGTTTGAGGAGAACGTGGTGGAGTTCAGCTCTATTGTGGAGAGCTTGCTGTACCGATACGGAAAGacTATAGTAGACGAGCAGCTGCTGCTGAAGAGAGTTGCTGATATACTGATTCACCTTTACGCCATGACGGCCGTCCTCTCCCGCGCCAGTCGCTCCATCAGCATCGGCCTGCGTAACCACGACCACGAGGTGCTGCTCGCTAACAATTTCTGCAAAGACGCTTACTTTAAAATCAACTACTGGACTGCTCAGCTGCAGAGACATTCCCCAGAGAACAACGACGACAACATAAAGAAGATCGCTCAGTTTGTTCTGGAGAAGCGAGCGTATACCTGCTCTCACCCTCTAGACCGAACCTTTTAACCTGCATCACCTGTATTAAACATCACCTGACCGTTTCCTGAGTAATGACTGGGTGTAAAAATCTGGTCCTCAGCTCTTATTTACTGGATTTTATCAGCAACAAAACCTCTTAACTCCTGCAACGGTTTTTACCACAGACAATAATTCACACACttggaga

Function

symbol description
acad9 Predicted to enable fatty-acyl-CoA binding activity and very-long-chain-acyl-CoA dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 20. Orthologous to human ACAD9 (acyl-CoA dehydrogenase family member 9).

NR:

description
acyl-CoA dehydrogenase family member 9, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K15980 ACAD9; acyl-CoA dehydrogenase family member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682456.1 True 2044 mRNA 0.49 18 15765883 15784654

Neighbor

gene id symbol gene type direction distance location
efcc1 efcc1,LOC107581369 coding downstream 4281 15723299 ~ 15761602 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding downstream 241710 15519665 ~ 15524173 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 261492 15495710 ~ 15504391 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding downstream 262235 15468213 ~ 15503648 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding downstream 357914 15359175 ~ 15407969 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding upstream 29566 15814220 ~ 15825239 (-)
LOC103047460 NA coding upstream 47434 15832088 ~ 15833721 (-)
LOC103030277 LOC108415871 coding upstream 62207 15846861 ~ 15851191 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding upstream 84481 15869135 ~ 16138293 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 735890 16520544 ~ 16556758 (-)
G190204 NA non-coding downstream 157978 15597327 ~ 15607905 (-)
G190199 NA non-coding downstream 196612 15556521 ~ 15569271 (-)
G190183 NA non-coding downstream 314313 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 411251 15353437 ~ 15354632 (-)
G190004 NA non-coding downstream 548533 15215638 ~ 15217350 (-)
G190232 NA non-coding upstream 6071 15790725 ~ 15866179 (-)
G190252 NA non-coding upstream 124381 15909035 ~ 15909528 (-)
G190257 NA non-coding upstream 181841 15966495 ~ 15969045 (-)
G190265 NA non-coding upstream 210542 15995196 ~ 16002227 (-)
G190268 NA non-coding upstream 217610 16002264 ~ 16043340 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 299299 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 443708 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2689141 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3051851 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 561047 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 784969 16569623 ~ 16599317 (-)
cass4 NA other upstream 1049196 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1396460 17181114 ~ 17193747 (-)
G190788 NA other upstream 1432667 17217321 ~ 17219780 (-)

Expression


Co-expression Network