cstf1 (cstf1)


Basic Information

Item Value
gene id cstf1
gene name cstf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16875408 ~ 16884596 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682471.1
GGGGACTTTTATTATAGCGGGCGGTTTTTCCCACAGTTCCACAGTGTAAAGCGGTGCGGTACCTGGCGTTAGCTagcctgctgaggaaGTTGGAGAGATGTATCGCCCAAAGCCGACACTGAAAGACCGACAGCACCTGTATAAACTGATCATCAGTCAGCTGCTGTATGATGGATACACCAACATCGCCAACAGCCTGATAAACGAAGTGAAACCCCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATCGGGATGGAGAATGATGACAGCGCTGTGCAGTACGCTATTGGCCGCTCGGACACGGTGGCTCCGGGGGTGGGGATTGATCTGGAGTTTGATGCGGATGTTCAGACAATGTCTCCGGAAGCCTCGGAGTACGAGACCTGTTACGTGACGTCTCATAAAGGGCCGTGCCGCGTGGCCACGTACAGCCGCGACGGGCAGCTCATCGCCACCGGCTCCGCCGACGCCTCCATTAAAATCCTGGATACAGAACGGATGCTGGCCAAGAGTGCCATGCCTCTGGAGGTAATGATGAACGAGACGGCGCAGCAGAACATGGAGAACCACCCTGTGATCAGGACCCTTTATGATCATGTGGATGAAGTTACCTGCCTGGCCTTCCACCCCACAGAGCAGATCCTGGCCTCAGGATCCCGAGATTACACCCTCAAACTCTTCGACTATTCCAAACCTTCAGCCAAAAGAGCTTTCAAACACATACAGGAAGCGGAGATGCTGCGCTCCATCTCCTTCCACCCGTCTGGAGACTTCCTGCTGGTGGGGACTCAGCACCCGACGCTGCGTCTGTACGACGTCAACACCTTCCAGTGCTTCGTATCCTGGAACCCGCTGGACCAGCACACAGACACCATCAGCGGCGTCAACTACAACCCCACCGCCAACAGCTACGTCACCTGCAGCAAGGACGGCAGCATCAAGCTGTGGGACGGCGTCTCCAACCGCTGCGTCACCACCTTCGAGAAAGCTCACGACGGAGCCGAGGTCTGCTCCGCCGTCTTCTCCAAAAACTCCAAATACATCCTGTCCAGCGGGAAGGACTCTGTAGCCAAGCTGTGGGAGATCTCCACCGGACGCACGCTCGTCAAATACACAGGCGCGGGTCTGAGTGGGCGTCAGACGCACCGTACTCAGGGCGTGTTTAATCACACGGAGGATTATATCCTGCTGCCGGACGAGCGCACCGTCAGCCTGTGCTGCTGGGACTCTCGCACGGCCGAGCGCAAGAACCTGCTGAGCCTCGGACACAACAACATCGTCCGCTGCATCGTCCACTCGCCCACCAACCCCGGCTTCATGACCTGCAGCGACGACTTCAGAGCCAGATTCTGGTACCGACGAACCACCACCGACtgaacctgagagagagagatgaaatgaGATGTGAACAACCTACCGAACCTGGGATCTGTGATGACCGGCCTTCACCACTAGAGGGCTCCATTTCACTATGAAGAGTTTTACATACCAGTAAACTGTTTATGAACTGTTTCAATAGTTATTAACTAggttataaatactttaaaacacattaatagaAAGGGAAatcactgttgccctttctgtgtttgtgttgtaactgtattaatgatttttaaagtgtttaaaactaattaataaccattaattgAATCCTTTATTACATGGTATTacgtgttttgttttttttacagacgaTAGGGAAAAGACTGATGAATTCAGTACTAAGTTTAGTACTGGTGTTGTATAATTTGATCAGCTGGAAAAAAAGatccttttctttttcagttcATGTTGGAACACTttgagccttttttttttaaataaaagattaaaagaaaa

Function

symbol description
cstf1 Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1).

NR:

description
cleavage stimulation factor subunit 1

GO: NA

KEGG:

id description
K14406 CSTF1; cleavage stimulation factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682471.1 True 1858 mRNA 0.51 6 16875408 16884596

Neighbor

gene id symbol gene type direction distance location
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 47971 16796868 ~ 16827437 (-)
phf2 phf2 coding downstream 81178 16739287 ~ 16794230 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding downstream 318650 16520544 ~ 16556758 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding downstream 737115 15869135 ~ 16138293 (-)
LOC103030277 LOC108415871 coding downstream 1024217 15846861 ~ 15851191 (-)
LOC103036783 NA coding upstream 2115 16886711 ~ 16954694 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding upstream 81620 16966216 ~ 17007699 (-)
strip1 strip1,LOC106565664 coding upstream 226075 17110671 ~ 17123621 (-)
LOC103038379 LOC107662820,LOC103362894 coding upstream 246745 17131341 ~ 17158655 (-)
LOC111195389 NA coding upstream 278220 17162816 ~ 17178813 (-)
G190446 NA non-coding downstream 55798 16818801 ~ 16819610 (-)
G190444 NA non-coding downstream 81821 16792880 ~ 16793587 (-)
G190434 NA non-coding downstream 127021 16691829 ~ 16748387 (-)
G190435 NA non-coding downstream 152748 16705878 ~ 16722660 (-)
G190433 NA non-coding downstream 188786 16686156 ~ 16686622 (-)
G190453 NA non-coding upstream 28398 16912994 ~ 16953947 (-)
G190750 NA non-coding upstream 72565 16957161 ~ 16958432 (-)
G190751 NA non-coding upstream 74138 16958734 ~ 16959355 (-)
LOC111195388 NA non-coding upstream 79299 16963895 ~ 16966069 (-)
G190754 NA non-coding upstream 108752 16993348 ~ 17044008 (-)
cass4 NA other downstream 5947 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 276091 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 414480 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1408824 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1553233 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 296518 17181114 ~ 17193747 (-)
G190788 NA other upstream 332725 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1254767 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1282644 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1426856 18311452 ~ 18315337 (-)

Expression


Co-expression Network