strip1 (strip1,LOC106565664)


Basic Information

Item Value
gene id strip1
gene name strip1,LOC106565664
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17110671 ~ 17123621 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682476.1
CGCGAGATCTgggcgtgtgtgtatgtgtggaggTAAGATGGAGGGTAACGGAGCTCCGGGGAACAACAAGCAGAAACCGATTTTACCGAAAAACAGAGGCGAATTTATCCGCAACCAGAGGAAGGACTCTGAGGGATTTTCTGAAGCTCCTGATCTGGAGTTTGAATACGCCGACTCAGACAAATGGGCAGCAGAATTATCAGaGCTGTACAGCTATACAGAGGGTCCGGAGTTCCAGCTGAACAGGAAGTGCTTTGAGGAGGATTTTCAGACACATGtggaGGGGAAGAGGTGGGTGGAGCTTGATGCTGTGCAGCACAGAGCTCACGCCATGCGGCTGCTGGACGGACTGGACGTGACCGGCCGGGAGAAGAGGTTAAAGGTGGCCAGAGCCATTCTCTATATGGCACaaggtacATTTTCGGACTGTGGTTCGGAGGCGGAGGTTCAGCACTGGATCAGATATAACGTGTTTCTGCTGCTGGACGTGGGAACCTTTACTGCACTCGTGGAGCTTCTCAACATGGAGATAGaaaacAGTGCAGCCTGCAGCAGTGCAGTGAGGAAACCTGCTATCTCCCTCGCCGACAGCACAGAcctcagGGTGCTGCTGAATATCATGTATCTGATGGTGGAGACAATTCAGCAGGACGATCCTGCAGATCCTCCAGAGTGGAGAGCTTCCAGAGAAACCTTCAAAACAGAGCTGGGCTCTCCTCTGTACAACAGCGAGCCAGTGTCTGTGATGCTCTTCGCCATGGTAACCAAGTTCTGCAGTGGCCACGCCCCCCACTTTCCCATGAAGAaggttctgctgctgctgtggaaaACTATACTGTTTACGTTGGGTGGGTTTGAGCAGCTGCAGCGGTTAAAGGTGTGTAAGAGGGTGGAGCTTGGCTTGCCCCGCCTCCCGGAGGACAGCATCAGTGTGATTCGCAGCATGAGAGCCGCCTCCCCTCCCGCCTCCGCCTCCGACCTGATAGAACAACAGCAGCGGAGAACCCGCCGAGAACacaaggctCTGATAAAGCAGGAGAATCTGGATGCGTTTAATGAGAAAGATCCGTATAAGGCTGATGATGCtcgtgatgatgatgatgaaggtgatgataatgataataatgagaGCGCTCTGGAGGCGGAGCCGTTTCCTCTGGAGCGGGATGAGGTCATGCCCCCGCCCATCCCGCACCCGCCCCAGACCGACCGCGTCTCCTTCCCCAAGGGCCTGCCCTGGGCTCCTAAAgtcagAGAGAAGGATATCGAGAATTTCCTGGAGTGCAGCCGGAGTAAATTTATTGGATACACACTCGGAAAtgATACAGACACAGTGGTCGGTCTGCCACGGCCCATTCATGAGAGCATCAAAACCCTAAAACAgcaTAAGTACATCTCCATAGCTGAGATTCAGATTGCAAAGGAGGAGGAGTTTCAGAAAACTCCACTGTCTGGGggggaGGAGGAGTTGGAGCTTTGTGCcactgagctgctgtatcagggAATCCTTCCCAGCCTTCCACAGTACATGATTGCTTTGCTGAAGATCCTCCTCGCTGCTGCTCCGACCTCAAAGGCCAAAACCGACTCTATTAACATCCTCGCAGACGTGCTGCCGGAGGAGATGCCgacTACAGTGCTGCAGAGTATGAAGCTCGGAGTCGACGTAAATCGTCACAAAGAAATCATTGTTAAAGCGATTTCAGCCATTCTGCTGCTCCTGCTCAAACACTTCAAACTCAACCACATCtaccagtttGAGTATATGGCTCAGCACCTGGTTTTTGCAAACTGTATTCCACTCATCCTCAAGTTCTTCAACCAGAACATCATGTCCTACATCACAGCCAAAAAcagTATCTCAGTGCTGGACTTCCCGTACTGCGTCCTACACGACCTCCCAGAGCTCACAGCGGAGAGTCTGGAAGCTGGTGATAATACTCAGTTCTGTTGGAGGAACTTGTTCTCCTGCATCAACCTGCTGAGGATCCTCAACAAGCTCACCAAGTGGAAGCACTCCAGGACCATGaTGTTGGTGGTGTTTAAATCTGCTCCGATCCTGAAGAGGGCGCTGAAGGTGAAGCAGGCGATGATGCAGCTCTACGTTCTGAAGTTGCTGAAGGTCCAGACGAAGTATCTCGGCCGGCAGTGGAGGAAGAGCAACATGAAGACCATGTCGGCCATTTACCAGAAAGTTCGCCATCGCCTTAATGACGACTGGGCGTACGGCAACGcaGATCTTGACGCGCGCCCGTGGGATTTCCAGGCGGAGGAGTGTTCTCTGAGAGCGAGTATCGAGCGCTTTAACAGCCGGCGGTACGATAAAGCCGTGGGGAACCCGGAGTTCTCCCCGGTGGATAACTGCCTGCAGAGCGTCCTCGGCCAGAAGGTGGAGCTCCCCGACGACTTCCAGATGAACTACGACCTCTGGCTGGAGCGGGAGGTCTTCTCCAAACCCATCTGCTGGGAGGAGCTGCTGCAgtaaacatgctcacacacacagactgggccttttattcattattaaggACATTTAAAGAGGTAGTTCTGTGGAAATCTGAACCCAAACCCCAGCAACCACACCAACCCAACCCCAGCTGTTCTCCGTTAGCTGTTCGGGTTCGGTGcttctttagcattagcacggGAGCTACCAGGCTAATGTCGCTAACAGGTCATGGGCGCTTGTATACCCATCAGTTAGCACTGGCTAATCATCACACACACCTTCATCATCCACAAGGCTGAAGTCGGTCTCTCACCGGAACTCtgcgttccaccttaaatccacCTTAAACACGCT
>XM_022682477.1
CGCGAGATCTgggcgtgtgtgtatgtgtggaggTAAGATGGAGGGTAACGGAGCTCCGGGGAACAACAAGCAGAAACCGATTTTACCGAAAAACAGAGGCGAATTTATCCGCAACCAGAGGAAGGACTCTGAGGGATTTTCTGAAGCTCCTGATCTGGAGTTTGAATACGCCGACTCAGACAAATGGGCAGCAGAATTATCAGaGCTGTACAGCTATACAGAGGGTCCGGAGTTCCAGCTGAACAGGAAGTGCTTTGAGGAGGATTTTCAGACACATGtggaGGGGAAGAGGTGGGTGGAGCTTGATGCTGTGCAGCACAGAGCTCACGCCATGCGGCTGCTGGACGGACTGGACGTGACCGGCCGGGAGAAGAGGTTAAAGGTGGCCAGAGCCATTCTCTATATGGCACaaggtacATTTTCGGACTGTGGTTCGGAGGCGGAGGTTCAGCACTGGATCAGATATAACGTGTTTCTGCTGCTGGACGTGGGAACCTTTACTGCACTCGTGGAGCTTCTCAACATGGAGATAGaaaacAGTGCAGCCTGCAGCAGTGCAGTGAGGAAACCTGCTATCTCCCTCGCCGACAGCACAGAcctcagGGTGCTGCTGAATATCATGTATCTGATGGTGGAGACAATTCAGCAGGACGATCCTGCAGATCCTCCAGAGTGGAGAGCTTCCAGAGAAACCTTCAAAACAGAGCTGGGCTCTCCTCTGTACAACAGCGAGCCAGTGTCTGTGATGCTCTTCGCCATGGTAACCAAGTTCTGCAGTGGCCACGCCCCCCACTTTCCCATGAAGAaggttctgctgctgctgtggaaaACTATACTGTTTACGTTGGGTGGGTTTGAGCAGCTGCAGCGGTTAAAGGTGTGTAAGAGGGTGGAGCTTGGCTTGCCCCGCCTCCCGGAGGACAGCATCAGTGTGATTCGCAGCATGAGAGCCGCCTCCCCTCCCGCCTCCGCCTCCGACCTGATAGAACAACAGCAGCGGAGAACCCGCCGAGAACacaaggctCTGATAAAGCAGGAGAATCTGGATGCGTTTAATGAGAAAGATCCGTATAAGGCTGATGATGCtcgtgatgatgatgatgaaggtgatgataatgataataatgagaGCGCTCTGGAGGCGGAGCCGTTTCCTCTGGAGCGGGATGAGGTCATGCCCCCGCCCATCCCGCACCCGCCCCAGACCGACCGCGTCTCCTTCCCCAAGGGCCTGCCCTGGGCTCCTAAAgtcagAGAGAAGGATATCGAGAATTTCCTGGAGTGCAGCCGGAGTAAATTTATTGGATACACACTCGGAAAtgATACAGACACAGTGGTCGGTCTGCCACGGCCCATTCATGAGAGCATCAAAACCCTAAAACAgcaTAAGTACATCTCCATAGCTGAGATTCAGATTGCAAAGGAGGAGGAGTTTCAGAAAACTCCACTGTCTGGGggggaGGAGGAGTTGGAGCTTTGTGCcactgagctgctgtatcagggAATCCTTCCCAGCCTTCCACAGTACATGATTGCTTTGCTGAAGATCCTCCTCGCTGCTGCTCCGACCTCAAAGGCCAAAACCGACTCTATTAACATCCTCGCAGACGTGCTGCCGGAGGAGATGCCgacTACAGTGCTGCAGAGTATGAAGCTCGGAGTCGACGTAAATCGTCACAAAGAAATCATTGTTAAAGCGATTTCAGCCATTCTGCTGCTCCTGCTCAAACACTTCAAACTCAACCACATCtaccagtttGAGTATATGGCTCAGCACCTGGTTTTTGCAAACTGTATTCCACTCATCCTCAAGTTCTTCAACCAGAACATCATGTCCTACATCACAGCCAAAAAcagTATCTCAGTGCTGGACTTCCCGTACTGCGTCCTACACGACCTCCCAGAGCTCACAGCGGAGAGTCTGGAAGCTGGTGATAATACTCAGTTCTGTTGGAGGAACTTGTTCTCCTGCATCAACCTGCTGAGGATCCTCAACAAGCTCACCAAGTGGAAGCACTCCAGGACCATGaTGTTGGTGGTGTTTAAATCTGCTCCGATCCTGAAGAGGGCGCTGAAGGTGAAGCAGGCGATGATGCAGCTCTACGTTCTGAAGTTGCTGAAGGTCCAGACGAAGTATCTCGGCCGGCAGTGGAGGAAGAGCAACATGAAGACCATGTCGGCCATTTACCAGAAAGTTCGCCATCGCCTTAATGACGACTGGGCGTACGGCAACGATCTTGACGCGCGCCCGTGGGATTTCCAGGCGGAGGAGTGTTCTCTGAGAGCGAGTATCGAGCGCTTTAACAGCCGGCGGTACGATAAAGCCGTGGGGAACCCGGAGTTCTCCCCGGTGGATAACTGCCTGCAGAGCGTCCTCGGCCAGAAGGTGGAGCTCCCCGACGACTTCCAGATGAACTACGACCTCTGGCTGGAGCGGGAGGTCTTCTCCAAACCCATCTGCTGGGAGGAGCTGCTGCAgtaaacatgctcacacacacagactgggccttttattcattattaaggACATTTAAAGAGGTAGTTCTGTGGAAATCTGAACCCAAACCCCAGCAACCACACCAACCCAACCCCAGCTGTTCTCCGTTAGCTGTTCGGGTTCGGTGcttctttagcattagcacggGAGCTACCAGGCTAATGTCGCTAACAGGTCATGGGCGCTTGTATACCCATCAGTTAGCACTGGCTAATCATCACACACACCTTCATCATCCACAAGGCTGAAGTCGGTCTCTCACCGGAACTCtgcgttccaccttaaatccacCTTAAACACGCT

Function

symbol description
strip1 Acts upstream of or within heart contraction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in cardiac ventricle. Orthologous to human STRIP1 (striatin interacting protein 1).

NR:

description
PREDICTED: striatin-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682476.1 True 2803 mRNA 0.53 21 17110671 17123621
XM_022682477.1 False 2800 mRNA 0.53 21 17110671 17123621

Neighbor

gene id symbol gene type direction distance location
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 102972 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 155977 16886711 ~ 16954694 (-)
cstf1 cstf1 coding downstream 226075 16875408 ~ 16884596 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 283234 16796868 ~ 16827437 (-)
phf2 phf2 coding downstream 316441 16739287 ~ 16794230 (-)
LOC103038379 LOC107662820,LOC103362894 coding upstream 7720 17131341 ~ 17158655 (-)
LOC111195389 NA coding upstream 39195 17162816 ~ 17178813 (-)
wdr77 wdr77 coding upstream 102057 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 143619 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 185790 17309411 ~ 17336942 (-)
G190758 NA non-coding downstream 5003 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 54549 17053147 ~ 17056122 (-)
G190754 NA non-coding downstream 66663 16993348 ~ 17044008 (-)
G190756 NA non-coding downstream 90235 16999579 ~ 17020436 (-)
LOC111195388 NA non-coding downstream 144602 16963895 ~ 16966069 (-)
G190783 NA non-coding upstream 1872 17125493 ~ 17131135 (-)
G190786 NA non-coding upstream 25847 17149468 ~ 17151839 (-)
G190785 NA non-coding upstream 29769 17153390 ~ 17154405 (-)
LOC111195391 NA non-coding upstream 112960 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 126576 17250197 ~ 17251702 (-)
cass4 NA other downstream 241210 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 511354 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 649743 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1644087 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1788496 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 57493 17181114 ~ 17193747 (-)
G190788 NA other upstream 93700 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 1015742 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1043619 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1187831 18311452 ~ 18315337 (-)

Expression


Co-expression Network