wdr77 (wdr77)


Basic Information

Item Value
gene id wdr77
gene name wdr77
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17225678 ~ 17234938 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682482.1
AAGCGGAAGTGAGTGGATGTCAGAGGCGCATGTACGCTGCTCCATCTCTCCGGCCATTCATTCGCGCGCTGGAAAAACAGACTCACAAACAAAccggtaaataaataaaccggTAAATAATCAGGTAAAGACTGAGAGCCGCCGCGCTGAGCTGCAGGATGCTAACCGAGAGCCGCTGGTGCCCCGCGAGCGCGCCCGCGTGCATGGAGAGACACCTGGAGACCCTGCAGTACAGAACAGatGGGACTCTGCTGTTGGGGGCGTCGGGTCTGACGGGTCGGTGTTGGCTCGGTTCTCTCTGGGTGTTCAGTGATGCTAAACTCGCTCCTAACGAGGGTTACTGTAAGGCGGGGGTTCAGACAGAGGCGGGAGTTACCCACGCTGAGTGGCTCACCAACAGAGCCATCATCCTCGCCTCAGACTCAGGTGCTGTTGAATTATGGGAGCTGGCGGAGGACGAGCGTCTGCTGGTAAACAGGTTTACTCGCCATGAGCACGATCACGTTGTGACGTCAGTGAGCCCTACGGCCGACGCAGGTCACGCGGTCAGCAGCGGCATGGACTGCAGGGTTAAAGTTTGGGATCTGAGTCAGGAGACGGTGATCAGCAGCTACAGCGCTCACTCCATGCCGGTGAACAGTGTGTGCTGCAGCCCGAAAGACGAATCGCTCTTCCTCTCCTGTGCTCAGGATGGACGTTTGTTGCTGTGGGATCGCAGAAAACCCAAACCTGCAACTCGATTAGATGTGGTCTCCCCCAGCTGCTGTCCAACTGCCGTCGCATGGGACCCtcacaaaaccaccacaatcgcATACGgtGATGAGCTGGGCAGGGTGACCCTGATGGATTTCCAGAAtgcagggagtgcgcagacgaTGAATACACACAGACGCAGAGTGACTGGCCTTAGGTTCTCTTCACAcagttctCCTCTGCTGGCCTCGGTGAGTGATGACTGCTCTGTTGCCGTGGTGAACGACCAGCTCAGAGAAATttatCGTGACGTCAGGCATCAGGACTTTGTGcggggtgtgtgttgggttccCGGCGGCTCGAATGTTCTGACAACAGCAGGGTGGGACCACCAGGTCCTGCAGCACAACCTGGACCAGAAAACTActgcttaaacacacacaactacatacacacacaaatacacacacacatcaaaactGTAAAGTCTGTAAAGTGTGTAAGTTCACTGTATCTGCCTTATCACGTTCTGTGGTTCTTTCCGGGTTGTCTCCGTTAGTGTTCatattaccatagcaaccacctagcagcaccatCACAACCACCTGGGGTATCATTGCAAACTTCTTTGCACCAGCATAGCTGTGATGCACTATAGCAGTATACCAATAGCAGCCACTCATCGACTTATACACAACCATTCAGCAAACATCATAGCCTAGACACACTTTAGCAACCttctaaaataccataacaTCCACCTAGTGACTCCATCACAACCACCAGGATATCATTGTGAATGTAACTTTGTACCAGCATAGCTGTGATACACTGTAGCAtctttctaaaataccataacaaCTACATAGTGACTCCTTCAGAGCCATTTAGCAAAGCCATAGCTGTGATAGACAATAGCCACTTAAATAGCTCctaaaataccatagcaaccgcaTAGAGACTCCATCACAGCAATTTagaaacaccataacaaccccCTTTTAAATCAATCACAGCCATTTAGCAAAACTTACCTGTGATACACAATAGCCACCTCctaaaataccatagcaaccacgtaGTAACTCCATCAGAgacatttagcaacaccatagcaaccacttagtaacaatATACCCAGGATACCCCAAAAACTACtgcgtaaacacacacacacacacccctagcCACAACCACACAGCTCCATTTAACATGCAAATAAGGCACTTATCcaagtctgtgtttgtgtgtgcgtgacagtattttatacacacacacacacacacacacacacacacacacagatatgagAGCTGGAGGACCCGTGTGTTATTGTTTTGTCACCTGAATAAGGCTGTGTTCTGCGGTTCTGTAATTTTCTGCTTGTAATTTTCCGGTTCTGTTTGTTCAGTAAAGGAATCTGTTAATCA

Function

symbol description
wdr77 Orthologous to human WDR77 (WD repeat domain 77).

NR:

description
PREDICTED: methylosome protein 50

GO: NA

KEGG:

id description
K13221 WDR77, MEP50; methylosome protein 50

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682482.1 True 2123 mRNA 0.49 11 17225678 17234938

Neighbor

gene id symbol gene type direction distance location
LOC111195389 NA coding downstream 46865 17162816 ~ 17178813 (-)
LOC103038379 LOC107662820,LOC103362894 coding downstream 67023 17131341 ~ 17158655 (-)
strip1 strip1,LOC106565664 coding downstream 102057 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 217979 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 270984 16886711 ~ 16954694 (-)
LOC111195392 LOC108414075 coding upstream 32302 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 74473 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 108062 17343000 ~ 17356073 (-)
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding upstream 184114 17419052 ~ 17432774 (-)
LOC103035479 LOC108416666,LOC108416668 coding upstream 217079 17452017 ~ 17458184 (-)
G190785 NA non-coding downstream 71273 17153390 ~ 17154405 (-)
G190786 NA non-coding downstream 73839 17149468 ~ 17151839 (-)
G190783 NA non-coding downstream 94543 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 120010 17020911 ~ 17105668 (-)
LOC111195391 NA non-coding upstream 1643 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 15259 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 64006 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 179569 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 181021 17415959 ~ 17416966 (-)
G190788 NA other downstream 5898 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 31931 17181114 ~ 17193747 (-)
cass4 NA other downstream 356217 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 626361 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 764750 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 904425 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 932302 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1076514 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1473381 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1662571 18897509 ~ 18902285 (-)

Expression


Co-expression Network