LOC103035479 (LOC108416666,LOC108416668)


Basic Information

Item Value
gene id LOC103035479
gene name LOC108416666,LOC108416668
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17452017 ~ 17458184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682493.1
atattataaaaatattctttaatTCATAAAAGGCTGCTTCTGGAGACGAGGCCAATAGCTAGCTAGTGCTAACAGTCTGAGGGAAATTATCAGCCAAGCTAGCAGTGCTAACGTTTAGAACATATTTGTTCTGGAGAATTGTGGCAGAAATACTCACATCTGTTGCCTAATCCAGCGTTAATCACGTACTTAAGAACACCAGCAATGTCTCTGAAGGACTGTATTGCCAATGCGGACACCAACAAACCTGGTTCTTCTTTTAAAGGGAGGAAACGCCGATCATCCACAGAAATCTCACAGGGTGGGGAGGTGATGGCCATGTTGGACAGTTTTAGAGTTGACATAAACAAAGCATTTGTGGCCAAGAGGAAATGTTTAGAGTCTTTCACCAGCTCTTCTCTCAAAACCAGCCAGCAGAAGGTTGAAGAGATGTGGAGGTCTCAGCAGAAAGAgcgGGCTCAAATGTCAGAAGATTACTGCACCCAGTTCAGCTCTGTGTTCCAGCAGTGGGAGTCAGACATACAGAAGGCCAAAGATCAAGACAAGAAGCTCATGGCTTTATTTcagcaccagcagatgatgTTCAAGCAGATGAGAGCTTCCCAAGGCCAGAGGCTGAAGACGCTTAAGCAGCTCCTCGACCACTACATCAAAAGCATGCAGGAGCTGCACAACACTCACGAGGAGCAGAGCACTACAGCAGTGAGTGAGTTACGCCAGGAGATGGGGCTGCTCCACAAGAAAATCCTCATGAACACACAGCATGAGGAGATGCAGTCAGTGCGCAAAACTCTGCAGTCTATGCTGATGTAGGTACTGTGTAATACTGTACAAATCTTTACATCAAACAAAAGTCTTCTTAAAGCTCTGAATATATGTTTACAACACATTCAAACTGCAGGagattaatgtttaatattgtttgcATGCTAGATTActtgattcccatattattaATAACACCCTTAATGAATTAGACTTCATAAgcttttttaattctgtttttttcttttatttcatattccatatatactgtattgattttccCCAGATAATTATA
>XM_022682494.1
TGTCTGTCCACTTCCTATCAGCTGCGCGCGCCTCGCCTACGTCATCCGCAGTGACCCTGTAGAACCTGGTTGAACCGGCAGGGGGCGGTACTTAAGAACACCAGCAATGTCTCTGAAGGACTGTATTGCCAATGCGGACACCAACAAACCTGGTTCTTCTTTTAAAGGGAGGAAACGCCGATCATCCACAGAAATCTCACAGGGTGGGGAGGTGATGGCCATGTTGGACAGTTTTAGAGTTGACATAAACAAAGCATTTGTGGCCAAGAGGAAATGTTTAGAGTCTTTCACCAGCTCTTCTCTCAAAACCAGCCAGCAGAAGGTTGAAGAGATGTGGAGGTCTCAGCAGAAAGAgcgGGCTCAAATGTCAGAAGATTACTGCACCCAGTTCAGCTCTGTGTTCCAGCAGTGGGAGTCAGACATACAGAAGGCCAAAGATCAAGACAAGAAGCTCATGGCTTTATTTcagcaccagcagatgatgTTCAAGCAGATGAGAGCTTCCCAAGGCCAGAGGCTGAAGACGCTTAAGCAGCTCCTCGACCACTACATCAAAAGCATGCAGGAGCTGCACAACACTCACGAGGAGCAGAGCACTACAGCAGTGAGTGAGTTACGCCAGGAGATGGGGCTGCTCCACAAGAAAATCCTCATGAACACACAGCATGAGGAGATGCAGTCAGTGCGCAAAACTCTGCAGTCTATGCTGATGTAGGTACTGTGTAATACTGTACAAATCTTTACATCAAACAAAAGTCTTCTTAAAGCTCTGAATATATGTTTACAACACATTCAAACTGCAGGagattaatgtttaatattgtttgcATGCTAGATTActtgattcccatattattaATAACACCCTTAATGAATTAGACTTCATAAgcttttttaattctgtttttttcttttatttcatattccatatatactgtattgattttccCCAGATAATTATA

Function

NR:

description
PREDICTED: synaptonemal complex protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682493.1 True 1060 mRNA 0.42 9 17452017 17457848
XM_022682494.1 False 962 mRNA 0.44 9 17452017 17458184

Neighbor

gene id symbol gene type direction distance location
LOC103035786 stk38,LOC105900354,LOC105016867,LOC107667630,LOC106583482 coding downstream 19243 17419052 ~ 17432774 (-)
LOC103036700 LOC108415149 coding downstream 95944 17343000 ~ 17356073 (-)
LOC103026358 LOC105900309,LOC100136526 coding downstream 115075 17309411 ~ 17336942 (-)
LOC111195392 LOC108414075 coding downstream 166223 17267240 ~ 17285794 (-)
wdr77 wdr77 coding downstream 217079 17225678 ~ 17234938 (-)
LOC103035164 NA coding upstream 10791 17468975 ~ 17478169 (-)
LOC111195393 NA coding upstream 25622 17483806 ~ 17493206 (-)
LOC103034515 LOC108413010 coding upstream 58704 17516888 ~ 17535789 (-)
LOC103024167 NA coding upstream 96064 17554248 ~ 17574657 (-)
znf76 znf76 coding upstream 150607 17608791 ~ 17619936 (-)
G190813 NA non-coding downstream 35051 17415959 ~ 17416966 (-)
G190818 NA non-coding downstream 36282 17414507 ~ 17415735 (-)
G190816 NA non-coding downstream 152318 17298944 ~ 17299699 (-)
G190827 NA non-coding downstream 200315 17250197 ~ 17251702 (-)
LOC111195391 NA non-coding downstream 213566 17236581 ~ 17238451 (-)
G190869 NA non-coding upstream 21374 17479558 ~ 17480715 (-)
G190812 NA non-coding upstream 36227 17494411 ~ 17552549 (-)
G190804 NA non-coding upstream 56290 17514474 ~ 17595696 (-)
G190795 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 non-coding upstream 70495 17528679 ~ 17642978 (-)
G190809 NA non-coding upstream 82202 17540386 ~ 17554117 (-)
G190788 NA other downstream 232237 17217321 ~ 17219780 (-)
irf6 irf6,LOC107599105,LOC106565674 other downstream 258270 17181114 ~ 17193747 (-)
cass4 NA other downstream 582556 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 852700 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 991089 16345701 ~ 16460928 (-)
mrpl20 mrpl20 other upstream 681179 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 709056 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 853268 18311452 ~ 18315337 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other upstream 1250135 18708319 ~ 18798915 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other upstream 1439325 18897509 ~ 18902285 (-)

Expression


Co-expression Network